BAC Information

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BAC

Clone NameB6Ng01-088F02
Chromosome1 (Build37)
Map Location 105,545,828 - 105,547,003
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041067
Downstream geneLOC383546, LOC100041134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088F02.bB6Ng01-088F02.g
ACCDH901204DH901205
length1,1811,185
definitionDH901204|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F02, 5' end.DH901205|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctactctattatggaagacaatgctatggaagcagtatcaataag
tctctttttcagataactatgtacttctatacataatacacctctctaga
taaactgcccaattaatatttcttaagtaaaacttccaaagtctcagaat
ttgaagtaaattccattatttcacatcccctcaatttgtgaattaaaata
tctcaaggaagctgtctaaatggactacttggaagggtagtcatcacatc
tacagagtgcagggcttatttaacttcctgttacagatgaggaggcatca
ggggatcaggtgtggatgaggtttcaagaagtaccttctaaccttctctt
gtcttattccccatgctaaagaaggagaaggtctccctggaaatggtagg
actggtgctgtccctgagggatctttatgacctccatacattcatctgac
agcaatgattagatttgttttgaaatcaaagacctcttccttctgcatct
gtgaactgattgcattttttatccttgagacaatagttagcagcatcaac
aggatgaacccagaagctcgacaacaggctatgtcatttatactattgac
cctctgctcccattagtagttgcttttcataaagctggatgtttttatca
gcacaaatgaaaagcaaagggacaagaatggggctgagctgaggctatgt
actacacaagtgtgagtgcttgagcttggtattcagatatccagtttggt
attagaaaggaatcgtatctttgttatcccagcatggttactgttaagct
tgagggtcagagcttgtatcctaaaccagggcctgtttccttatattgtc
aataaagcaaatacaatattcaaattgacagatgaagcagaaaaggtgta
tttactcaatgtggccaatttggaagaaggacaagaaatataccactcct
tatccgaagtccatctttgagaacttgaagtgagattaaaattttaatat
agtaaaagtgatctaaggatatgcaaaccttaaacagttctggtgaatat
gcagcattgaccatcatttttttttctattcagtttcattttgtattgta
gtcttagaaggtaatcagaacctgtggaaatacctcttttttctagaaaa
aaagaatccattttggagtgtacctcctctt
gaattccaaggtacaaaatccattggttgaatatctttgttaactgctct
taaattcattgtcatcctctattttatttttcacatcaaataggagattt
tcaaggactggtagactcgtctttgaaacaccaactattcttttgctagt
tgttcaagtgcctggaaactttttgttgtggtggtttgaagcactgttct
ttccatacaggttggtttgttaaccactttaggggcaaggctattggtat
atccacagtgtcctctttctaagttttgaaatttgatctcttttatgtcc
tgtttttggatcatattgtgatatttctcaatctcccgaatcagcatatt
cccaatgaatatcacacttaatttcctcatttgctgaccctgtaatcgca
ggagtattcatttgtatatcccattgttgtaaagaaatcccttgcccata
aattgatggatatgtaagccatataagtttttgaatttctttttgccctt
ctagttcctcatggttaattgattgactctttgtattattcctgtaattt
accaattataaattgtgtgaaaacctactaaagtggccaatttggatttc
aagacttttgttaaagtgttgaaataaaagttttgttagatatatcaatt
aaagtcaacaccattcattcataacattatttagggtccctgatcagtaa
tcatatatatatatatgtatatatatattttttttgccagaacacaggtt
tttaaatacactcaaaagctctgttcctttctaaagacacagccttgccc
ttaatgtgaggaaataataacagttgagcaattctattccctggatcatt
tgcatctactttttcacatatatcctatggaaggaaatccttggtatcac
catggagagtctatctgaagaccatgttttacactctttttttttcagca
aatgtctttctatacattcacttgtctgaaagcccttgtgtagatctatc
aaagtagattaaagtgacatatctttctctatatttattaaagaagaggt
attcccctttccacaatgttcgcctacatgacattatgaatcattgactg
ctcatgagataatccgattgtttgtctacagaagatgactccgaacatat
tttctttacgagtaggaaagagtagattatgagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105545828_105547003
seq2: B6Ng01-088F02.b_43_1223

seq1  GAATTCTACTCTATTATGGAAGACAATGCTATGGAAGCAGTATCAATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTCTATTATGGAAGACAATGCTATGGAAGCAGTATCAATAAG  50

seq1  TCTCTTTTTCAGATAACTATGTACTTCTATACATAATACACCTCTCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTCAGATAACTATGTACTTCTATACATAATACACCTCTCTAGA  100

seq1  TAAACTGCCCAATTAATATTTCTTAAGTAAAACTTCCAAAGTCTCAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCCCAATTAATATTTCTTAAGTAAAACTTCCAAAGTCTCAGAAT  150

seq1  TTGAAGTAAATTCCATTATTTCACATCCCCTCAATTTGTGAATTAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTAAATTCCATTATTTCACATCCCCTCAATTTGTGAATTAAAATA  200

seq1  TCTCAAGGAAGCTGTCTAAATGGACTACTTGGAAGGGTAGTCATCACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGAAGCTGTCTAAATGGACTACTTGGAAGGGTAGTCATCACATC  250

seq1  TACAGAGTGCAGGGCTTATTTAACTTCCTGTTACAGATGAGGAGGCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGCAGGGCTTATTTAACTTCCTGTTACAGATGAGGAGGCATCA  300

seq1  GGGGATCAGGTGTGGATGAGGTTTCAAGAAGTACCTTCTAACCTTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCAGGTGTGGATGAGGTTTCAAGAAGTACCTTCTAACCTTCTCTT  350

seq1  GTCTTATTCCCCATGCTAAAGAAGGAGAAGGTCTCCCTGGAAATGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTCCCCATGCTAAAGAAGGAGAAGGTCTCCCTGGAAATGGTAGG  400

seq1  ACTGGTGCTGTCCCTGAGGGATCTTTATGACCTCCATACATTCATCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGCTGTCCCTGAGGGATCTTTATGACCTCCATACATTCATCTGAC  450

seq1  AGCAATGATTAGATTTGTTTTGAAATCAAAGACCTCTTCCTTCTGCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGATTAGATTTGTTTTGAAATCAAAGACCTCTTCCTTCTGCATCT  500

seq1  GTGAACTGATTGCATTTTTTATCCTTGAGACAATAGTTAGCAGCATCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTGATTGCATTTTTTATCCTTGAGACAATAGTTAGCAGCATCAAC  550

seq1  AGGATGAACCCAGAAGCTCGACAACAGGCTATGTCATTTATACTATTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAACCCAGAAGCTCGACAACAGGCTATGTCATTTATACTATTGAC  600

seq1  CCTCTGCTCCCATTAGTAGTTGCTTTTCATAAAGCTGGATGTTTTTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTCCCATTAGTAGTTGCTTTTCATAAAGCTGGATGTTTTTATCA  650

seq1  GCACAAATGAAAAGCAAAGGGACAAGAATGGGGCTGAGCTGAGGCTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAATGAAAAGCAAAGGGACAAGAATGGGGCTGAGCTGAGGCTATGT  700

seq1  ACTACACAAGTGTGAGTGCTTGAGCTTGGTATTCAGATATCCAGTTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAAGTGTGAGTGCTTGAGCTTGGTATTCAGATATCCAGTTTGGT  750

seq1  ATTAGAAAGGAATCGTATCTTTGTTATCCCAGCATGGTTACTGTTAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAGGAATCGTATCTTTGTTATCCCAGCATGGTTACTGTTAAGCT  800

seq1  TGAGGGTCAGAGCTTGTATCCTAAACCAGGGCCTGTTTCCTTATATTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCAGAGCTTGTATCCTAAACCAGGGCCTGTTTCCTTATATTGTC  850

seq1  AATAAAGCAAATACAATATTCAAATTGACAGATGAAGCAGAAAAGGTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCAAATACAATATTCAAATTGACAGATGAAGCAGAAAAGGTGTA  900

seq1  TTTACTCAATGTGGCCAATTTGGAAGAAGGACAAAGAAATATACCACTCC  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTACTCAATGTGGCCAATTTGGAAGAAGGAC-AAGAAATATACCACTCC  949

seq1  TTATCCGAAGTCCATCTTTGAGAACTTGAAGTGAGATTAAAATTTTAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCGAAGTCCATCTTTGAGAACTTGAAGTGAGATTAAAATTTTAATA  999

seq1  TAGTAAAAGTGATCTAAGGATATGCAAACC-TAAACAGTTCTGGTGAATA  1049
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAGTAAAAGTGATCTAAGGATATGCAAACCTTAAACAGTTCTGGTGAATA  1049

seq1  TGCAGCATTGACCATCATTTTTTTTTCTA-TCAGTTTCATTCTGTATTGT  1098
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  TGCAGCATTGACCATCATTTTTTTTTCTATTCAGTTTCATTTTGTATTGT  1099

seq1  AGTC-TAGAA-GTTATCAGAA-CTGT-GAATTACCCTCTTTTTCTAGGAG  1144
      |||| ||||| || ||||||| |||| ||| ||||   ||||||||| | 
seq2  AGTCTTAGAAGGTAATCAGAACCTGTGGAAATACCTCTTTTTTCTAGAAA  1149

seq1  ACAAG-ATCCATTTTTGGATGGTACCTCCTCTT  1176
      | ||| ||||| |||||||  ||||||||||||
seq2  AAAAGAATCCA-TTTTGGAGTGTACCTCCTCTT  1181