BAC Information

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BAC

Clone NameB6Ng01-088I01
Chromosome1 (Build37)
Map Location 165,708,934 - 165,814,720
singlet/doubletdoublet
Overlap geneKifap3
Upstream geneFmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626
Downstream geneScyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088I01.bB6Ng01-088I01.g
ACCDH901336DH901337
length1,1791,013
definitionDH901336|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I01, 5' end.DH901337|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,813,550 - 165,814,720)(165,708,934 - 165,709,945)
sequence
gaattcagatgtctatattaaatataaggtgatatataatacatatgtga
aatttgtacagtatatatttgtgagacatagaatatgtgaacagtattac
tgattaatgtgatattaattatcagtgatcagatataatgccaaattata
ttatcatccaattattgatcacacaccacaaattgtcattaatttagtta
taattactttctttttcttttttctttggtatcaggactgaagcctcacc
tgtgcatgttaggaacgctccctacctccaagatatcatttcagcctaat
acttttattttgagtcttccacaggactttattggaaatcctttctttgt
ctcaactataactgatttcaatttagtattgctaatattgacgatagtgt
gaaaatgttaaaagcaaaacatgtgaaactttaccatctttgtggcaaac
tcatccctgtaatcagccatgatcaacagtgttataataaatacggcatt
tgaataacactgactataatttcaaaggattgtacactttagaagggaaa
gctttgtatcttcccggtaatcaccaaacacatttaatagtttaaaatta
aaacaaaaccatggtagtattaaactgcttatattaaataagaaataaag
aaatgaaattaaaaagttatatagttaatagatgtagaacacagaacaat
gagtgtaatgttgctgattagaattcagacatcctgaaaacgttttaact
tacttacacagtagaaagcgtctaacagccgtttgctgtcctgggtacat
atacttttaatggagatcacaccaaagactaacttggaaaaaataatgtt
actagttttgtttggtgtacacagttgctattacatgaaattattaatag
aagaccacttagatactaaaagtgtgcttagagttgggaatgtgcatggc
gaggagatgaactctttttataacacacgaaagaagcctgtgtgcttgct
ttggtcatcatcttacctgagtttgtaagaaaggtcagcctttcagaatg
tccccttcattggatgtacggctcaatgcgatcattcaccataacaggta
ctgcctcgcctctcatcagctgagagcccctcacaccaatcccagaccac
tgggagagttattgccagcgaaacttctc
gaattccttattgataaattgaaagaatagttacaactttatcataaata
aatttaattggtgtgagttggtaggggcataaaacatctctttaatgtct
ctctgcatgacattttatgcataaaaatctatcactattaactcttttga
aggaatggctaacaatgtgataccagaagacggtgatggacaggttaaag
gatctcaaagcagagcagacagcttgctttggctaaaaagcggctctttt
ctctctccaaattgtcagcaattatttgccttagaagaaacaatttctca
agaatcttgagttaaagttaatcagtggacgatttggaagttcagaagtt
ggcttgttataatggaagggagtgttttctactttgggattttaaatgcc
actttcaaagttgatccaatccacatcacagactatttccaccaactaga
attccgtgcaatcaatgcaaaaccttttacatgttccaaaatagaagctc
caccaaagaagatgttgtcaaaggctagtctgatcaccatcattagttag
ctagaaggttcactggttaccttgtctcctttcacgctaaggactttacg
ttccaattttgcagcttgcaatgcttcttcctttcccatcctccaggggg
cagtgaccaacaatatgcctctaaatcacaggctcccagatcagtaccga
actcttcctgcgctgttcctgggagcgtcagatttgtcgcctgagcctca
ccctgagcctgctcagactgtacctgtcgcgtgagctcatgcgccttgct
gagagttcggccctgacagctctgggcgggtctgggctgctccagtgttt
tggggcccaggatcactggagaggagcccggaggctcaccccggtaacga
tgcgtcagcttcggcgacaacatcaccgcaacggctgccccgccttgcag
gcattgtgactgtcacccctctgctttgagggtactttgaccgggtcttc
cggaaggagccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165813550_165814720
seq2: B6Ng01-088I01.b_43_1221 (reverse)

seq1  GAGAAGTTTCGCTGGC-ATAACTCT--CAGTGG-CTGGAGATGGTG-GA-  44
      |||||||||||||||| ||||||||  |||||| ||||   ||||| || 
seq2  GAGAAGTTTCGCTGGCAATAACTCTCCCAGTGGTCTGGGATTGGTGTGAG  50

seq1  GAGCCGTCAGCTGGATGAGA-GCGA-GCAGTACTTG-TATGGTG-ATGAT  90
      | ||  |||||| ||||||| |||| ||||||| || ||||||| |||||
seq2  GGGCTCTCAGCT-GATGAGAGGCGAGGCAGTACCTGTTATGGTGAATGAT  99

seq1  CGCATTGAGCCGTACATCC-ATGAAGGGGACATTCTTGAAAGGCCTGACC  139
      ||||||||||||||||||| ||||||||||||||| ||||||| ||||||
seq2  CGCATTGAGCCGTACATCCAATGAAGGGGACATTC-TGAAAGG-CTGACC  147

seq1  TTTTCTAC-AACTCAGGTAAGATGATGACCAAAGCAAGCACACAGGCTTC  188
      |||  ||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACAAACTCAGGTAAGATGATGACCAAAGCAAGCACACAGGCTTC  197

seq1  CTTCGTGTGTTATAAAAAGAGTTCATCTCCTCGCCATGCACATTCCCAAA  238
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTCGTGTGTTATAAAAAGAGTTCATCTCCTCGCCATGCACATTCCC-AA  246

seq1  CTCTAAGCACACTTTTAGTATCTAAGTGGTCTTCTATTAATAATTTCATG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGCACACTTTTAGTATCTAAGTGGTCTTCTATTAATAATTTCATG  296

seq1  TAATAGCAACTGTGTACACCAAACAAAACTAGTAACATTATTTTTTCCAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCAACTGTGTACACCAAACAAAACTAGTAACATTATTTTTTCCAA  346

seq1  GTTAGTCTTTGGTGTGATCTCCATTAAAAGTATATGTACCCAGGACAGCA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCTTTGGTGTGATCTCCATTAAAAGTATATGTACCCAGGACAGCA  396

seq1  AACGGCTGTTAGACGCTTTCTACTGTGTAAGTAAGTTAAAACGTTTTCAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCTGTTAGACGCTTTCTACTGTGTAAGTAAGTTAAAACGTTTTCAG  446

seq1  GATGTCTGAATTCTAATCAGCAACATTACACTCATTGTTCTGTGTTCTAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGAATTCTAATCAGCAACATTACACTCATTGTTCTGTGTTCTAC  496

seq1  ATCTATTAACTATATAACTTTTTAATTTCATTTCTTTATTTCTTATTTAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTAACTATATAACTTTTTAATTTCATTTCTTTATTTCTTATTTAA  546

seq1  TATAAGCAGTTTAATACTACCATGGTTTTGTTTTAATTTTAAACTATTAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCAGTTTAATACTACCATGGTTTTGTTTTAATTTTAAACTATTAA  596

seq1  ATGTGTTTGGTGATTACCGGGAAGATACAAAGCTTTCCCTTCTAAAGTGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTGGTGATTACCGGGAAGATACAAAGCTTTCCCTTCTAAAGTGT  646

seq1  ACAATCCTTTGAAATTATAGTCAGTGTTATTCAAATGCCGTATTTATTAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCTTTGAAATTATAGTCAGTGTTATTCAAATGCCGTATTTATTAT  696

seq1  AACACTGTTGATCATGGCTGATTACAGGGATGAGTTTGCCACAAAGATGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTTGATCATGGCTGATTACAGGGATGAGTTTGCCACAAAGATGG  746

seq1  TAAAGTTTCACATGTTTTGCTTTTAACATTTTCACACTATCGTCAATATT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTCACATGTTTTGCTTTTAACATTTTCACACTATCGTCAATATT  796

seq1  AGCAATACTAAATTGAAATCAGTTATAGTTGAGACAAAGAAAGGATTTCC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATACTAAATTGAAATCAGTTATAGTTGAGACAAAGAAAGGATTTCC  846

seq1  AATAAAGTCCTGTGGAAGACTCAAAATAAAAGTATTAGGCTGAAATGATA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTCCTGTGGAAGACTCAAAATAAAAGTATTAGGCTGAAATGATA  896

seq1  TCTTGGAGGTAGGGAGCGTTCCTAACATGCACAGGTGTGGCTTCAGTCCT  938
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTTGGAGGTAGGGAGCGTTCCTAACATGCACAGGTGAGGCTTCAGTCCT  946

seq1  GATACCAAAGAAAAAAGAAAAAGAAAGTAATTATAACTAAATTAATGACA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAAAGAAAAAAGAAAAAGAAAGTAATTATAACTAAATTAATGACA  996

seq1  ATTTGTGGTGTGTGATCAATAATTGGATGATAATATAATTTGGCATTATA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGGTGTGTGATCAATAATTGGATGATAATATAATTTGGCATTATA  1046

seq1  TCTGATCACTGATAATTAATATCACATTAATCAGTAATACTGTTCACATA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCACTGATAATTAATATCACATTAATCAGTAATACTGTTCACATA  1096

seq1  TTTTATGTCTCACAAATATATACTGTACAAATTTCACATATGTATTATAT  1138
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTCTCACAAATATATACTGTACAAATTTCACATATGTATTATAT  1146

seq1  ATCACCTTATATTTAATATAGACATCTGAATTC  1171
      |||||||||||||||||||||||||||||||||
seq2  ATCACCTTATATTTAATATAGACATCTGAATTC  1179

seq1: chr1_165708934_165709945
seq2: B6Ng01-088I01.g_65_1077

seq1  GAATTCCTTATTGATAAATTGAAAGAATAGTTACAACTTTATCAGAAATA  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATTCCTTATTGATAAATTGAAAGAATAGTTACAACTTTATCATAAATA  50

seq1  AATTTAATTGGTGTGAGTTGGTAGGGGCATAAAACATCTCTTTAATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTGGTGTGAGTTGGTAGGGGCATAAAACATCTCTTTAATGTCT  100

seq1  CTCTGCATGACATTTTATGCATAAAAATCTATCACTATTAACTCTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATGACATTTTATGCATAAAAATCTATCACTATTAACTCTTTTGA  150

seq1  AGGAATGGCTAACAATGTGATACCAGAAGACGGTGATGGACAGGTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGCTAACAATGTGATACCAGAAGACGGTGATGGACAGGTTAAAG  200

seq1  GATCTCAAAGCAGAGCAGACAGCTTGCTTTGGCTAAAAAGCGGCTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAAAGCAGAGCAGACAGCTTGCTTTGGCTAAAAAGCGGCTCTTTT  250

seq1  CTCTCTCCAAATTGTCAGCAATTATTTGCCTTAGAAGAAACAATTTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCAAATTGTCAGCAATTATTTGCCTTAGAAGAAACAATTTCTCA  300

seq1  AGAATCTTGAGTTAAAGTTAATCAGTGGACGATTTGGAAGTTCAGAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTGAGTTAAAGTTAATCAGTGGACGATTTGGAAGTTCAGAAGTT  350

seq1  GGCTTGTTATAATGGAAGGGAGTGTTTTCTACTTTGGGATTTTAAATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTATAATGGAAGGGAGTGTTTTCTACTTTGGGATTTTAAATGCC  400

seq1  ACTTTCAAAGTTGATCCAATCCACATCACAGACTATTTCCACCAGCTAGA  450
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTTTCAAAGTTGATCCAATCCACATCACAGACTATTTCCACCAACTAGA  450

seq1  ATTCAGTGCAATCAATGCAGAACCTTTTACATGTTCCAAAATAGAAGCTC  500
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTCCGTGCAATCAATGCAAAACCTTTTACATGTTCCAAAATAGAAGCTC  500

seq1  CACCAAAGAAGTTGTTGTCAAAGGCTAGTCTGATCACCATCATTAGTTAG  550
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGAAGATGTTGTCAAAGGCTAGTCTGATCACCATCATTAGTTAG  550

seq1  CTAGAAGGTTCACTGGTTACCTTGTCTCCTTTCACGCTAAGGACTTTACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGTTCACTGGTTACCTTGTCTCCTTTCACGCTAAGGACTTTACG  600

seq1  TTCCAATTTTGCAGCTTGCAATGCTTCTTCCTTTCCCATCCTCCAGGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTTTGCAGCTTGCAATGCTTCTTCCTTTCCCATCCTCCAGGGGG  650

seq1  CAGTGACCAGGAATATGCCTCTAAATCACAGGCTCCCAGATCAGTACCAA  700
      |||||||||  ||||||||||||||||||||||||||||||||||||| |
seq2  CAGTGACCAACAATATGCCTCTAAATCACAGGCTCCCAGATCAGTACCGA  700

seq1  ACCCTTCCTGCGCTGTTCCTGGGAGCGTCAGATTTGTCGCAGGAGCCTCA  750
      || |||||||||||||||||||||||||||||||||||||  ||||||||
seq2  ACTCTTCCTGCGCTGTTCCTGGGAGCGTCAGATTTGTCGCCTGAGCCTCA  750

seq1  CCCTGAGCCTGCGCAGACTGTAGCTGTCGCGTGAGCGCATGCGCCTTGCG  800
      |||||||||||| ||||||||| ||||||||||||| |||||||||||| 
seq2  CCCTGAGCCTGCTCAGACTGTACCTGTCGCGTGAGCTCATGCGCCTTGCT  800

seq1  GAGAGTTCGGCCCTGACGGCTCTGGGCGGGTCTGGGCTGCTCCAGTGTTT  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGAGTTCGGCCCTGACAGCTCTGGGCGGGTCTGGGCTGCTCCAGTGTTT  850

seq1  TGGGGCCCAGGAGCAGTGG-GAGGAGCCGGCGGGTTCACCGTGGTAACCG  899
      |||||||||||| || ||| |||||||| |  || |||||  ||||| ||
seq2  TGGGGCCCAGGATCACTGGAGAGGAGCCCGGAGGCTCACCCCGGTAA-CG  899

seq1  CTGCGCCGCCGCCGCCGCCACCGCCACCGCCACCGCCGCCCCGCCTTGCA  949
       |||| |  |  || || || |  |||||| || || |||||||||||||
seq2  ATGCGTCAGCTTCGGCGACAACATCACCGCAACGGCTGCCCCGCCTTGCA  949

seq1  GGCCTTGGGACTGTCACCGCTCTGCTTTGAGGGTACTTTGGCCGGGTC-T  998
      ||| ||| |||||||||| ||||||||||||||||||||| ||||||| |
seq2  GGCATTGTGACTGTCACCCCTCTGCTTTGAGGGTACTTTGACCGGGTCTT  999

seq1  CCGGAAGTAGCCCT  1012
      ||||||| ||||||
seq2  CCGGAAGGAGCCCT  1013