BAC Information

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BAC

Clone NameB6Ng01-088J15
Chromosome1 (Build37)
Map Location 51,282,759 - 51,421,739
singlet/doubletdoublet
Overlap geneSdpr, LOC383504
Upstream geneLOC100041993, Tmeff2
Downstream geneObfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088J15.bB6Ng01-088J15.g
ACCDH901411DH901412
length2191,103
definitionDH901411|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J15, 5' end.DH901412|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,421,521 - 51,421,739)(51,282,759 - 51,283,875)
sequence
tcccagggaggctcagattgcatttttcttgctggagtcctggcatttat
ggcttgaattcaggcatggataacaggcaagaagtcttcagactgtcccc
ctcacacatactctaacctaattcagaaaaattatcttttaatttgcaca
ttttaatattttacatttatttagcctcccccttttctactgtggtgtgg
tgtggtgtggtatggtgtg
gaattcaatagtcttctactttcacatttccctaccatcaacttcttggc
tgtagaagcgttccaatctggagcctgtcggatgctaggcaggagttctg
ccactgagctccatcaccagccctttttacaggttttcttttgagactac
atcttgacaagttttccaggctcccctggaacttctgatcctccttatat
cagtttccttagtagctgggattatagacctgtgacaggaagccacatgt
cctcaaactgctgtaagggaaatggatggaatttttatttagatggaagg
tggctccctactttttgacttggaggagttgggacagtaatgggagtggt
gatacaaattgtatgatagagaagagggctagatggagcaggtgggagtt
tatttagcagagttcacgggtgaataacaggcatgcaccacaatctaaga
agaattgatgggcaggaaatggagaaatgagattgctcactataaacaag
cataagataatgttacttttcattttaaaatggctgacatacaacaacag
ggaggagagacagagtagatgaacagcaatgcaaactattggactctatt
ttagggaaagtgacagagaaaaaaaaatgttcaagagcccaaggttccat
acatttcatggtatctgactatagaatgtcatatgacttctccagatatt
acctatttattcattagaataaatgcacagctgattactagaaggctatg
ttgggagtatgggggacataattatagtgaaggaatggtgtcctgtgctg
gagtcaaagcacgatcagagtgaggaactgccatgtgacacaacagtgaa
aatggaaagtttggcacatggaaactccagagaccaggagctgaaacaga
cccctggccattgcgatctcctgggacagatcttgtattcccttaatatg
agcaacattcttgggagcagctctgtataggacagactcatctctgtctc
tgtgcatcacagaatacttctggtggatgccatatagctctcaggaagaa
ctatgaatagttgataattacagtgggggagatgcatctctaggctactg
tta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51421521_51421739
seq2: B6Ng01-088J15.b_52_270 (reverse)

seq1  CACACCATACCACACCACACCACACCACAGTAGAAAAGGGGGAGGCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATACCACACCACACCACACCACAGTAGAAAAGGGGGAGGCTAAA  50

seq1  TAAATGTAAAATATTAAAATGTGCAAATTAAAAGATAATTTTTCTGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAAATATTAAAATGTGCAAATTAAAAGATAATTTTTCTGAATT  100

seq1  AGGTTAGAGTATGTGTGAGGGGGACAGTCTGAAGACTTCTTGCCTGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGAGTATGTGTGAGGGGGACAGTCTGAAGACTTCTTGCCTGTTAT  150

seq1  CCATGCCTGAATTCAAGCCATAAATGCCAGGACTCCAGCAAGAAAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTGAATTCAAGCCATAAATGCCAGGACTCCAGCAAGAAAAATGC  200

seq1  AATCTGAGCCTCCCTGGGA  219
      |||||||||||||||||||
seq2  AATCTGAGCCTCCCTGGGA  219

seq1: chr1_51282759_51283875
seq2: B6Ng01-088J15.g_65_1167

seq1  GAATTCAATAGTCTTCTACTTTCACATTTCCCTACCATCAACTTCTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTCTTCTACTTTCACATTTCCCTACCATCAACTTCTTGGC  50

seq1  TGTAGAAGCGTTCCAATCTGGAGCCTGTCGGATGCTAGGCAGGAGTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGCGTTCCAATCTGGAGCCTGTCGGATGCTAGGCAGGAGTTCTG  100

seq1  CCACTGAGCTCCATCACCAGCCCTTTTTACAGGTTTTCTTTTGAGACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCTCCATCACCAGCCCTTTTTACAGGTTTTCTTTTGAGACTAC  150

seq1  ATCTTGACAAGTTTTCCAGGCTCCCCTGGAACTTCTGATCCTCCTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGACAAGTTTTCCAGGCTCCCCTGGAACTTCTGATCCTCCTTATAT  200

seq1  CAGTTTCCTTAGTAGCTGGGATTATAGACCTGTGACAGGAAGCCACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTTAGTAGCTGGGATTATAGACCTGTGACAGGAAGCCACATGT  250

seq1  CCTCAAACTGCTGTAAGGGAAATGGATGGAATTTTTATTTAGATGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTGCTGTAAGGGAAATGGATGGAATTTTTATTTAGATGGAAGG  300

seq1  TGGCTCCCTACTTTTTGACTTGGAGGAGTTGGGACAGTAATGGGAGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCTACTTTTTGACTTGGAGGAGTTGGGACAGTAATGGGAGTGGT  350

seq1  GATACAAATTGTATGATAGAGAAGAGGGCTAGATGGAGCAGGTGGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAATTGTATGATAGAGAAGAGGGCTAGATGGAGCAGGTGGGAGTT  400

seq1  TATTTAGCAGAGTTCACGGGTGAATAACAGGCATGCACCACAATCTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGCAGAGTTCACGGGTGAATAACAGGCATGCACCACAATCTAAGA  450

seq1  AGAATTGATGGGCAGGAAATGGAGAAATGAGATTGCTCACTATAAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGATGGGCAGGAAATGGAGAAATGAGATTGCTCACTATAAACAAG  500

seq1  CATAAGATAATGTTACTTTTCATTTTAAAATGGCTGACATACAACAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGATAATGTTACTTTTCATTTTAAAATGGCTGACATACAACAACAG  550

seq1  GGAGGAGAGACAGAGTAGATGAACAGCAATGCAAACTATTGGACTCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGACAGAGTAGATGAACAGCAATGCAAACTATTGGACTCTATT  600

seq1  TTAGGGAAAGTGACAGAGAAAAAAAAATGTTCAAGAGCCCAAGGTTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAAGTGACAGAGAAAAAAAAATGTTCAAGAGCCCAAGGTTCCAT  650

seq1  ACATTTCATGGTATCTGACTATAGAATGTCATATGACTTCTCCAGATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCATGGTATCTGACTATAGAATGTCATATGACTTCTCCAGATATT  700

seq1  ACCTATTTATTCATTAGAATAAATGCACAGCTGATTACTAGAAGGCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTATTCATTAGAATAAATGCACAGCTGATTACTAGAAGGCTATG  750

seq1  TTGGGAGTATGGGGGACATAATTATAGTGAAGGAATGGTGTCCTGTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTATGGGGGACATAATTATAGTGAAGGAATGGTGTCCTGTGCTG  800

seq1  GAGTCAAAGCACGATCAGAGTGAGGAACTGCCATGTGACACAACAGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAAGCACGATCAGAGTGAGGAACTGCCATGTGACACAACAGTGAA  850

seq1  AATGGAAAGTTTGGCACATGGAAACTCCAGAGAACCAGGAGCTGAAACAA  900
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  AATGGAAAGTTTGGCACATGGAAACTCCAGAG-ACCAGGAGCTGAAAC-A  898

seq1  GACCCCTGGCCATTTGCGAATCTCCTGGGACAAGATC-TGTATTTCCCTT  949
      |||||||||||| ||||| |||||||||||| ||||| |||| |||||||
seq2  GACCCCTGGCCA-TTGCG-ATCTCCTGGGAC-AGATCTTGTA-TTCCCTT  944

seq1  AATATGAGCAAACATTCTTGGGAGCAGCCTCTGTATAGGACAGACCCATC  999
      ||||||||| ||||||||||||||||| ||||||||||||||||| ||||
seq2  AATATGAGC-AACATTCTTGGGAGCAG-CTCTGTATAGGACAGACTCATC  992

seq1  TCTGTCTCTGTGCATCACAGAATACCTCT-GTGGATGCCAATATAAGCCT  1048
      ||||||||||||||||||||||||| ||| ||||||||| |||||   ||
seq2  TCTGTCTCTGTGCATCACAGAATACTTCTGGTGGATGCC-ATATA--GCT  1039

seq1  CCCAGGAAGAACTTATGAATAGTTGAATAATTTACAGT-GGGGAGATGCA  1097
      | |||||||||| |||||||||||| |||| ||||||| |||||||||| 
seq2  CTCAGGAAGAAC-TATGAATAGTTG-ATAA-TTACAGTGGGGGAGATGC-  1085

seq1  ATCTCCAGGCCTAACTGTTA  1117
      ||||| ||||   |||||||
seq2  ATCTCTAGGC--TACTGTTA  1103