BAC Information

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BAC

Clone NameB6Ng01-088K15
Chromosome1 (Build37)
Map Location 37,952,242 - 38,047,505
singlet/doubletdoublet
Overlap geneMrpl30, Gm776, 2300002O18Rik, Txndc9
Upstream geneTmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1
Downstream geneEG666434, Eif5b, Rev1, EG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088K15.bB6Ng01-088K15.g
ACCDH901456DH901457
length1,0551,106
definitionDH901456|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K15, 5' end.DH901457|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,952,242 - 37,953,221)(38,046,375 - 38,047,505)
sequence
gaattccagataaagtaaggcctgattcttttttaaaatatttttatata
ccaattttataaaattataagttattttcaaatttattccattgtgtgtt
gcattgtgtctgtgtttctgttgcacagatgtgtgtgcacttgtcctggt
ttgtgtgtggaagcctagaaggcaattgtgtagtcatttctctccactgc
catggtactgctggggagtggagctcaggtcatcagacgtcaggcacagc
agcaaacactgctcatggcaggtcacagcctgctagtggagatttgctta
ggttgcacatgcatatatattagatatggtgtagacttgaagtgcatata
gacagatatagtgtagacttggaagcacatatagacagatatagtgtaga
cttgaagtacatatagacagatatagtgcagacttgaagtgcatatagac
agatatagtgcagacttggaagcactgtaggaagctgacctctgctccca
gcccaccgggtttcataggaatggactcctataattttctggcctgtgta
ttctgctcatggttctccctttatatactgtggtctttgtcactatcgtc
ctgagaagactgtgagtagaggctgtccccttgtgactctgtccttactt
cctgcatcaaccacacaggcaaagctctcctttagtttgttgttgtcctt
ttaattttgtttgggtttcacttgcttcttagttaattgaactttatgta
gtaaaacagttgaatgatacagaagaacatgatcagaaggcatggaggct
tcctctcttcttcacaggttcccattttgcattgatataaagcaactatt
agcatagatgaaacaacttggacattactgcaggccgtcatgtatggggt
cagtctgcatgctgtgtatcaccctgtgggttttgatgaatgcataagat
tatatattcactactgcagtgtcacacagaactgtgcactgccctacatg
tcactgtgtcccgcctctcaggctctagtccctagcagccttttcaatca
ctttc
gaattccaaatgggacaccagctgtatttttgcctcttgtgagttctgtc
agcttcaggtctgtcggccttcatgcaggggaaccaagaccttctttgtt
tttcttctaagcgtgacagttaatgcatttctagaaaagggctgtgaaat
gggctgctcagggctgttctctttagcttttacctctctgccttaacttc
caggtgtaaaatactagacagacatttggcaattctggccaaaaagcatc
ttgaaaccaagtttttgaagctgaatgtggaaaaggcaccattcctctgt
gagagactgcggatcaaggtcatccccacgctagctctcttaagagatgg
caagacgcaagattatgttgttggattcaccgacctaggaaatacagatg
acttcactacagaaactttagaatggagacttggttgttctgatgttatc
aattacaggtaacctttagcaaaaacaaacaaacaaacaaaaatagactt
ttgaaactattcctagtcaatagttttagaaatctttttgaatatacttg
tatttttgcttctgttttatttttttcaaaagatttatttatttattata
tgtaagttcacattagctgtcttcagacacaccagaagagggtatcagat
ctcattacagatggttgtgagccaccatgtggttgctgggatttgaactc
aggacctctggaagagcagtcagtgctcttgaccactgagccatctttct
agcccttgtttctgtttttttaagacaggatttctctgtagtttttttct
gtcctggaactctctctgtagaccagggtagccttaactcagagatctgc
ctgcctctgcctcgtgagtagtgggattaaagggatgcaccatcgcatca
gctagttaacgtttattttatgaaattaagacctgctggctaaaatgtga
tggcttagggaagaaatttctcactgcatacagcatgtgatctacagcaa
accaaattatagttaagacagggctagaggtgacctagagctttcaccta
gaatgttactgaacgattgagccaagtgctttcgaatagagtacttgctg
aagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_37952242_37953221
seq2: B6Ng01-088K15.b_49_1028

seq1  GAATTCCAGATAAAGTAAGGCCTGATTCTTTTTTAAAATATTTTTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATAAAGTAAGGCCTGATTCTTTTTTAAAATATTTTTATATA  50

seq1  CCAATTTTATAAAATTATAAGTTATTTTCAAATTTATTCCATTGTGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTATAAAATTATAAGTTATTTTCAAATTTATTCCATTGTGTGTT  100

seq1  GCATTGTGTCTGTGTTTCTGTTGCACAGATGTGTGTGCACTTGTCCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGTCTGTGTTTCTGTTGCACAGATGTGTGTGCACTTGTCCTGGT  150

seq1  TTGTGTGTGGAAGCCTAGAAGGCAATTGTGTAGTCATTTCTCTCCACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGGAAGCCTAGAAGGCAATTGTGTAGTCATTTCTCTCCACTGC  200

seq1  CATGGTACTGCTGGGGAGTGGAGCTCAGGTCATCAGACGTCAGGCACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTACTGCTGGGGAGTGGAGCTCAGGTCATCAGACGTCAGGCACAGC  250

seq1  AGCAAACACTGCTCATGGCAGGTCACAGCCTGCTAGTGGAGATTTGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACACTGCTCATGGCAGGTCACAGCCTGCTAGTGGAGATTTGCTTA  300

seq1  GGTTGCACATGCATATATATTAGATATGGTGTAGACTTGAAGTGCATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCACATGCATATATATTAGATATGGTGTAGACTTGAAGTGCATATA  350

seq1  GACAGATATAGTGTAGACTTGGAAGCACATATAGACAGATATAGTGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATATAGTGTAGACTTGGAAGCACATATAGACAGATATAGTGTAGA  400

seq1  CTTGAAGTACATATAGACAGATATAGTGCAGACTTGAAGTGCATATAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTACATATAGACAGATATAGTGCAGACTTGAAGTGCATATAGAC  450

seq1  AGATATAGTGCAGACTTGGAAGCACTGTAGGAAGCTGACCTCTGCTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGTGCAGACTTGGAAGCACTGTAGGAAGCTGACCTCTGCTCCCA  500

seq1  GCCCACCGGGTTTCATAGGAATGGACTCCTATAATTTTCTGGCCTGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCGGGTTTCATAGGAATGGACTCCTATAATTTTCTGGCCTGTGTA  550

seq1  TTCTGCTCATGGTTCTCCCTTTATATACTGTGGTCTTTGTCACTATCGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCATGGTTCTCCCTTTATATACTGTGGTCTTTGTCACTATCGTC  600

seq1  CTGAGAAGACTGTGAGTAGAGGCTGTCCCCTTGTGACTCTGTCCTTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGACTGTGAGTAGAGGCTGTCCCCTTGTGACTCTGTCCTTACTT  650

seq1  CCTGCATCAACCACACAGGCAAAGCTCTCCTTTAGTTTGTTGTTGTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCAACCACACAGGCAAAGCTCTCCTTTAGTTTGTTGTTGTCCTT  700

seq1  TTAATTTTGTTTGGGTTTCACTTGCTTCTTAGTTAATTGAACTTTATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTGTTTGGGTTTCACTTGCTTCTTAGTTAATTGAACTTTATGTA  750

seq1  GTAAAACAGTTGAATGATACAGAAGAACATGATCAGAAGGCATGGAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACAGTTGAATGATACAGAAGAACATGATCAGAAGGCATGGAGGCT  800

seq1  TCCTCTCTTCTTCACAGGTTCCCATTTTGCATTGATATAAAGCAACTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTCTTCACAGGTTCCCATTTTGCATTGATATAAAGCAACTATT  850

seq1  AGCATAGATGAAACAACTTGGACATTACTGCAGGCCGTCATGTATGGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGATGAAACAACTTGGACATTACTGCAGGCCGTCATGTATGGGGT  900

seq1  CAGTCTGCATGCTGTGTATCACCCTGTGGGTTTTGATGAATGCATAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCATGCTGTGTATCACCCTGTGGGTTTTGATGAATGCATAAGAT  950

seq1  TATATATTCACTACTGCAGTGTCACACAGA  980
      ||||||||||||||||||||||||||||||
seq2  TATATATTCACTACTGCAGTGTCACACAGA  980

seq1: chr1_38046375_38047505
seq2: B6Ng01-088K15.g_67_1172 (reverse)

seq1  CCCCTTCCAGCAAGGTACTCTATTCTGAAATGTCACTTTGGGCTTCCAAA  50
      |||||| |||||| ||||||||||| ||||   |||||  ||||  ||| 
seq2  CCCCTT-CAGCAA-GTACTCTATTC-GAAA--GCACTT--GGCT--CAA-  40

seq1  ATTCGTTTCAGTAACATTTCTTAGGTTGAAAGCTTCTAGGTCACCTCTAA  100
        ||| ||||||||||||   |||| ||||||| ||||||||||||||| 
seq2  --TCG-TTCAGTAACATT--CTAGG-TGAAAGC-TCTAGGTCACCTCTAG  83

seq1  GCCTGTCTTTAACTATAAATTTGGTTTTGCTGTAAGATCACATTGCTGTA  150
       |||||| |||||||| ||||||| |||||||| |||||||| |||||||
seq2  CCCTGTC-TTAACTAT-AATTTGG-TTTGCTGT-AGATCACA-TGCTGTA  128

seq1  TGCAGTGAGAAATTTCTTTCCCTAAGCCATCCACATTTTAGCCAGCAGGT  200
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  TGCAGTGAGAAATTTC-TTCCCTAAGCCAT-CACATTTTAGCCAGCAGGT  176

seq1  CTTAATTTCATAAAATAAACGTTAACTAGCCTGATGCGATGGTGCATCCC  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTAATTTCATAAAATAAACGTTAACTAG-CTGATGCGATGGTGCATCCC  225

seq1  TTTAATCCCACTACTCACGAGGCAGAGGCAGGCAGATCTCTGAGTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCACTACTCACGAGGCAGAGGCAGGCAGATCTCTGAGTTAAGG  275

seq1  CTACCCTGGTCTACAGAGAGAGTTCCAGGACAGAAAAAAACTACAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTGGTCTACAGAGAGAGTTCCAGGACAGAAAAAAACTACAGAGAA  325

seq1  ATCCTGTCTTAAAAAAACAGAAACAAGGGCTAGAAAGATGGCTCAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCTTAAAAAAACAGAAACAAGGGCTAGAAAGATGGCTCAGTGGT  375

seq1  CAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAAC  425

seq1  CACATGGTGGCTCACAACCATCTGTAATGAGATCTGATACCCTCTTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGCTCACAACCATCTGTAATGAGATCTGATACCCTCTTCTGG  475

seq1  TGTGTCTGAAGACAGCTAATGTGAACTTACATATAATAAATAAATAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGAAGACAGCTAATGTGAACTTACATATAATAAATAAATAAATC  525

seq1  TTTTGAAAAAAATAAAACAGAAGCAAAAATACAAGTATATTCAAAAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAAAAATAAAACAGAAGCAAAAATACAAGTATATTCAAAAAGAT  575

seq1  TTCTAAAACTATTGACTAGGAATAGTTTCAAAAGTCTATTTTTGTTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAACTATTGACTAGGAATAGTTTCAAAAGTCTATTTTTGTTTGTT  625

seq1  TGTTTGTTTTTGCTAAAGGTTACCTGTAATTGATAACATCAGAACAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTGCTAAAGGTTACCTGTAATTGATAACATCAGAACAACCA  675

seq1  AGTCTCCATTCTAAAGTTTCTGTAGTGAAGTCATCTGTATTTCCTAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCATTCTAAAGTTTCTGTAGTGAAGTCATCTGTATTTCCTAGGTC  725

seq1  GGTGAATCCAACAACATAATCTTGCGTCTTGCCATCTCTTAAGAGAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATCCAACAACATAATCTTGCGTCTTGCCATCTCTTAAGAGAGCTA  775

seq1  GCGTGGGGATGACCTTGATCCGCAGTCTCTCACAGAGGAATGGTGCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGGGATGACCTTGATCCGCAGTCTCTCACAGAGGAATGGTGCCTTT  825

seq1  TCCACATTCAGCTTCAAAAACTTGGTTTCAAGATGCTTTTTGGCCAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTCAGCTTCAAAAACTTGGTTTCAAGATGCTTTTTGGCCAGAAT  875

seq1  TGCCAAATGTCTGTCTAGTATTTTACACCTGGAAGTTAAGGCAGAGAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAATGTCTGTCTAGTATTTTACACCTGGAAGTTAAGGCAGAGAGGT  925

seq1  AAAAGCTAAAGAGAACAGCCCTGAGCAGCCCATTTCACAGCCCTTTTCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTAAAGAGAACAGCCCTGAGCAGCCCATTTCACAGCCCTTTTCTA  975

seq1  GAAATGCATTAACTGTCACGCTTAGAAGAAAAACAAAGAAAGTCTTGGTT  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAATGCATTAACTGTCACGCTTAGAAGAAAAACAAAGAAGGTCTTGGTT  1025

seq1  CCCCTGCATGAAGGCCGACAGACCTGAAGCTGACAGAACTCACAAGAGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCATGAAGGCCGACAGACCTGAAGCTGACAGAACTCACAAGAGGC  1075

seq1  AAAAATACAGCTGGTGTCCCATTTGGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  AAAAATACAGCTGGTGTCCCATTTGGAATTC  1106