BAC Information

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BAC

Clone NameB6Ng01-088N08
Chromosome1 (Build37)9 (Build37)
Map Location 193,517,569 - 193,518,7445,944,390 - 5,944,503
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7
Downstream geneLpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088N08.bB6Ng01-088N08.g
ACCDH901580DH901581
length1,173344
definitionDH901580|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N08, 5' end.DH901581|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(193,517,569 - 193,518,744)(5,944,390 - 5,944,503)
sequence
gaattcagtggatggtaagatgaatgaataatgagagaacggtatactct
gtcacgtaggaagtaatcaggaaagttgctagacacttttcatggcaatg
taaataataaagtaaaccaattacagttcatggacaaaactgataagctg
ttacaaacagccacgtcagaggaagctgtaccctgtaaaaatgtggcaag
aagcaaattaccttgtctctgctaatttcaaaataccattgacagcaggg
ctggatttatgttacatgatatatttcacagattaaaaaccagggtctag
agttactaaggatgacatgggtgaaggtagcaactgcatacaggagatat
gaatatcacagtagctgtggctaatgggcaatcaatcaccttctgaagca
gcaggagggtaataagtatcctcacagactaacacacaacccagacaatt
cccaagaattctgaggcccatgggttagaaagtgtctattccaatagttc
tcaaagtagtcaagtatttcctaaagtgtggtcaatctcagcactaagaa
gcaagagggtgccgtgcctacagagatggtatctgaaaagtgtacactat
ttatataggatcctagccaaaaacacataaccaaaaatctaaccacaaga
catcagccaaacctgcactgaggaatggtctataaaagaactagcctgta
ttcatttaaaagaaatgtcaatgtcacaaaaggaacaaagataggctaat
gcacagttccagaattaaaaatttaaaaaaaggatgtcactctaaagata
atgtgtgtctctagactggatctcaaattgggaagagaggtgctacaaaa
ggcattattgtatcaactgatgactatgcattatgcatgagataaaagca
ctgtattaatgttaaattttctgaataacttaacagtacttatttagaga
cattattgttattcttaggaaacactgaagttttaagatatgtgcaacat
attctcaaattgtattaaaaaaaacattgagacaaaaaaaagggactgat
aagtatgattaacagccctacttttacttcttttgcatttttctaaaaat
aaagatttttttaaagaaaaatggcacagctttaatttccagcacctcgg
gaggccagagcaggggaatttct
ctgacagatatgatatgatatgatatgatatgatatgatatgatatgata
tacgtgacagtgcctggcaaatacagaagtggatgctcacagtcatccat
tggacggagcacagggtccccaatgaaggagctagagaaaggacccaagg
agctgaaggggtttgcagttgggactaaaccaccaatcaaagaaaacaca
cagagggactcatggctctagctgcatatatagcagaggatggtctagtc
agtcatcaatgggaggagaagcccttggtcctgtgaagattctatgcccc
agtataggggaaggtcaaggccaggaagagggagtgggtgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_193517569_193518744
seq2: B6Ng01-088N08.b_48_1220

seq1  GAATTCAGTGGATGGTAAGATGAATGAATAATGAGAGAACGGTATACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGATGGTAAGATGAATGAATAATGAGAGAACGGTATACTCT  50

seq1  GTCACGTAGGAAGTAATCAGGAAAGTTGCTAGACACTTTTCATGGCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGTAGGAAGTAATCAGGAAAGTTGCTAGACACTTTTCATGGCAATG  100

seq1  TAAATAATAAAGTAAACCAATTACAGTTCATGGACAAAACTGATAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATAAAGTAAACCAATTACAGTTCATGGACAAAACTGATAAGCTG  150

seq1  TTACAAACAGCCACGTCAGAGGAAGCTGTACCCTGTAAAAATGTGGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACAGCCACGTCAGAGGAAGCTGTACCCTGTAAAAATGTGGCAAG  200

seq1  AAGCAAATTACCTTGTCTCTGCTAATTTCAAAATACCATTGACAGCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATTACCTTGTCTCTGCTAATTTCAAAATACCATTGACAGCAGGG  250

seq1  CTGGATTTATGTTACATGATATATTTCACAGATTAAAAACCAGGGTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTATGTTACATGATATATTTCACAGATTAAAAACCAGGGTCTAG  300

seq1  AGTTACTAAGGATGACATGGGTGAAGGTAGCAACTGCATACAGGAGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTAAGGATGACATGGGTGAAGGTAGCAACTGCATACAGGAGATAT  350

seq1  GAATATCACAGTAGCTGTGGCTAATGGGCAATCAATCACCTTCTGAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCACAGTAGCTGTGGCTAATGGGCAATCAATCACCTTCTGAAGCA  400

seq1  GCAGGAGGGTAATAAGTATCCTCACAGACTAACACACAACCCAGACAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGGTAATAAGTATCCTCACAGACTAACACACAACCCAGACAATT  450

seq1  CCCAAGAATTCTGAGGCCCATGGGTTAGAAAGTGTCTATTCCAATAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAATTCTGAGGCCCATGGGTTAGAAAGTGTCTATTCCAATAGTTC  500

seq1  TCAAAGTAGTCAAGTATTTCCTAAAGTGTGGTCAATCTCAGCACTAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTAGTCAAGTATTTCCTAAAGTGTGGTCAATCTCAGCACTAAGAA  550

seq1  GCAAGAGGGTGCCGTGCCTACAGAGATGGTATCTGAAAAGTGTACACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGGTGCCGTGCCTACAGAGATGGTATCTGAAAAGTGTACACTAT  600

seq1  TTATATAGGATCCTAGCCAAAAACACATAACCAAAAATCTAACCACAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGGATCCTAGCCAAAAACACATAACCAAAAATCTAACCACAAGA  650

seq1  CATCAGCCAAACCTGCACTGAGGAATGGTCTATAAAAGAACTAGCCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCCAAACCTGCACTGAGGAATGGTCTATAAAAGAACTAGCCTGTA  700

seq1  TTCATTTAAAAGAAATGTCAATGTCACAAAAGGAACAAAGATAGGCTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAAAAGAAATGTCAATGTCACAAAAGGAACAAAGATAGGCTAAT  750

seq1  GCACAGTTCCAGAATTAAAAATTTAAAAAAAGGATGTCACTCTAAAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTTCCAGAATTAAAAATTTAAAAAAAGGATGTCACTCTAAAGATA  800

seq1  ATGTGTGTCTCTAGACTGGATCTCAAATTGGGAAGAGAGGTGCTACAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTCTCTAGACTGGATCTCAAATTGGGAAGAGAGGTGCTACAAAA  850

seq1  GGCATTATTGTATCAACTGATGACTATGCATTATGCATGAGATAAAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTATTGTATCAACTGATGACTATGCATTATGCATGAGATAAAAGCA  900

seq1  CTGTATTAATGTTAAATTTTCTGAATAACTTAACAGTACTTATTTAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTAATGTTAAATTTTCTGAATAACTTAACAGTACTTATTTAGAGA  950

seq1  CATTATTGTTATTCTTAGGAAACACTGAAGTTTTTAAGATATGTGCAACA  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATTATTGTTATTCTTAGGAAACACTGAAG-TTTTAAGATATGTGCAACA  999

seq1  TATTCTCAAATTGTATTAAAAAAAACATTGAGACAAAAAAAAGGGACTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCAAATTGTATTAAAAAAAACATTGAGACAAAAAAAAGGGACTGA  1049

seq1  TAAAGTAATGATTAACAGCCCTACTTTTTACTCCTTTTGCATTTTTCTAG  1100
      | |||| ||||||||||||||||| ||||||| |||||||||||||||| 
seq2  T-AAGT-ATGATTAACAGCCCTAC-TTTTACTTCTTTTGCATTTTTCTAA  1096

seq1  AAATAAAGAATTTTCTAAAG-AAAATGGCACAAGCCTTTAATCCCAGCA-  1148
      ||||||||| |||| ||||| |||||||||| ||| || | | |||||| 
seq2  AAATAAAGATTTTTTTAAAGAAAAATGGCAC-AGCTTTAATTTCCAGCAC  1145

seq1  CTCGGGAGG-CAGAGGCAGGGGGATTTCT  1176
      ||||||||| |||| ||||||| ||||||
seq2  CTCGGGAGGCCAGA-GCAGGGGAATTTCT  1173

seq1: chr9_5944390_5944503
seq2: B6Ng01-088N08.g_306_419 (reverse)

seq1  AACCCACCCACTCCCACTTCCTGGCCCTGACATTGCCCTATACTGGGGCA  50
      ||||||||||||||| |||||||||| |||| || |||||||||||||||
seq2  AACCCACCCACTCCCTCTTCCTGGCCTTGACCTTCCCCTATACTGGGGCA  50

seq1  TAGAACCTTCCCAAGACCAAGGGCCTCTCCTCCCATTGATGACCAACTAG  100
      ||||| |||| || |||||||||| ||||||||||||||||||  |||||
seq2  TAGAATCTTCACAGGACCAAGGGCTTCTCCTCCCATTGATGACTGACTAG  100

seq1  GCCATCCTCTGCTA  114
       |||||||||||||
seq2  ACCATCCTCTGCTA  114