BAC Information

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BAC

Clone NameB6Ng01-088N22
Chromosome1 (Build37)
Map Location 58,521,475 - 58,522,614
singlet/doubletsinglet
Overlap geneOrc2l
Upstream geneLOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1
Downstream geneBC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088N22.bB6Ng01-088N22.g
ACCDH901606DH901607
length1,2161,116
definitionDH901606|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N22, 5' end.DH901607|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatttttaaatagctgaatagtactccattgtgtaaatgtatcac
attttctgaatccattcctctgttgaaggacatctgggttgtttccagct
tctggctattataaataaggctgctatgaacatagtggagcatgtgtcct
tgttatatgttggagcatttttgggtatatgcccaggagtagtatagttg
ggtcctgaggtagtgctatgtccaattatctgaggaatcaacagactgat
tttcagagtggttgtaccagtttccaatcccaccaacaatggaggagtgt
tcctctttctccacatcctcgctagtatctgctgtcacctgagtttttta
tcttagccattctgactggtctgaggtggaatctcagggtcattttgatt
tgcatttccctgattactaaaaatgtagaacatttctttaggtgcttctt
ggtcattagagtttcctcagttttgacatagaatatcttgttttctccat
ctacggtgattgagagttttgctgggtatagtagcctgggttggcatttg
tgttctcttagggtatgtatgacatctacccaggatcttctagctttcat
agtctctggtgagaagtctggtgtaattctgataggtctgcctttatatg
ttacttgacatttttcgcttactgcttttagtattctttctttgttttgt
gcatttggtgttttaactattatgtgacaggaggaatttcttttctaggt
caatctatttgtaattctataggctttttgtattttcatgggcatctctt
tctttgggttagggaagttttcgtctagaattttgttgaagatatatact
ggccctttacgttgggaatcttcactctcttctataccgattatactagg
tttcatcttctcattgtgtcctgggatttcctggatgttttgggtcagga
accttttttgccttttttggttttctttcactggtggtggcaatgatttc
tagggatctctggaacctgagatctccccttctatcctcttggtatctgg
taggggggctggcatctatgactcttgatctcttctaaggtttgtatctc
aaggtggcctcctcggaatcttaatggtttaattccacttagatctgaat
atgatcaatctgcatgaatgtacggtatctacggactggagtgacttcta
cgactctacgacgtga
gaattcactctctgtagtccagggtggcctccaactcagatgcttcatgt
agctggacactcctgctagatcctccatcctgttccaaacctgacaggga
tttttctgttttatttcccccagtacaagtttcatcttactgacttctgt
tgtgttttgcgacagggtctcaatatgcatgtagccttggctagcctgga
acccatggatatctgcatgcttcctcctccccaccgcaggaatgaaagtg
tgccaggcctcctccagccttcacctcatttggaagacattcaagtagct
ttggcctcagactatcttttggagttgtagagatggctcagcactaagaa
tataactgctcttccagaggatgggtttgattctcagcacctgtgtggca
gctcatacctgtctataactccagttccagggatccatcgctctcttcta
gtttctacaagcactaggcatgcacacatacatggtgcagatacagataa
aacatgtatgcagtaaaataattagaaatcatttgttcaggcaggcagga
attctggactgctggtgcaatgctggcggcaagacaagtgggagtgcagt
gtgtgccacagttccctggcagaggaagctcagctcagccacgggtacct
gggtctgttctcaggcgacagcatatgcacactcaaaactctcctcatgc
actttcctattcctgcctgataacctgggtttcctttattaaaaatgatt
agtacaactgctagttattttcaacaaataaagccattatgttcagaggg
gactgtccatagtgagtgaaaaggtggcaggcaggggcctacagctccta
ggggatggagaattcatgtgaagccgaatgaaggatcttaccatatactg
tcccctttctaatggcctctctttagtgctgtgtctatgtaatgctaaag
tacagatcctcatgcagcttctctgactggtttttagtaaccttgtataa
aatggcatatgcactttaaaaaaataagtgtcaatcatcctctgcacctc
atcttctagagtgtccataattgttccttttcgagacagcatctgcggta
agcaggcacctgttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58521475_58522614
seq2: B6Ng01-088N22.g_67_1182

seq1  GAATTCACTCTCTGTAGTCCAGGGTGGCCTCCAACTCAGATGCTTCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTCTGTAGTCCAGGGTGGCCTCCAACTCAGATGCTTCATGT  50

seq1  AGCTGGACACTCCTGCTAGATCCTCCATCCTGTTCCAAACCTGACAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACACTCCTGCTAGATCCTCCATCCTGTTCCAAACCTGACAGGGA  100

seq1  TTTTTCTGTTTTATTTCCCCCAGTACAAGTTTCATCTTACTGACTTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTTTTATTTCCCCCAGTACAAGTTTCATCTTACTGACTTCTGT  150

seq1  TGTGTTTTGCGACAGGGTCTCAATATGCATGTAGCCTTGGCTAGCCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTGCGACAGGGTCTCAATATGCATGTAGCCTTGGCTAGCCTGGA  200

seq1  ACCCATGGATATCTGCATGCTTCCTCCTCCCCACCGCAGGAATGAAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGGATATCTGCATGCTTCCTCCTCCCCACCGCAGGAATGAAAGTG  250

seq1  TGCCAGGCCTCCTCCAGCCTTCACCTCATTTGGAAGACATTCAAGTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCCTCCTCCAGCCTTCACCTCATTTGGAAGACATTCAAGTAGCT  300

seq1  TTGGCCTCAGACTATCTTTTGGAGTTGTAGAGATGGCTCAGCACTAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCAGACTATCTTTTGGAGTTGTAGAGATGGCTCAGCACTAAGAA  350

seq1  TATAACTGCTCTTCCAGAGGATGGGTTTGATTCTCAGCACCTGTGTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGCTCTTCCAGAGGATGGGTTTGATTCTCAGCACCTGTGTGGCA  400

seq1  GCTCATACCTGTCTATAACTCCAGTTCCAGGGATCCATCGCTCTCTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATACCTGTCTATAACTCCAGTTCCAGGGATCCATCGCTCTCTTCTA  450

seq1  GTTTCTACAAGCACTAGGCATGCACACATACATGGTGCAGATACAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACAAGCACTAGGCATGCACACATACATGGTGCAGATACAGATAA  500

seq1  AACATGTATGCAGTAAAATAATTAGAAATCATTTGTTCAGGCAGGCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTATGCAGTAAAATAATTAGAAATCATTTGTTCAGGCAGGCAGGA  550

seq1  ATTCTGGACTGCTGGTGCAATGCTGGCGGCAAGACAAGTGGGAGTGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGACTGCTGGTGCAATGCTGGCGGCAAGACAAGTGGGAGTGCAGT  600

seq1  GTGTGCCACAGTTCCCTGGCAGAGGAAGCTCAGCTCAGCCACGGGTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCACAGTTCCCTGGCAGAGGAAGCTCAGCTCAGCCACGGGTACCT  650

seq1  GGGTCTGTTCTCAGGCGACAGCATATGCACACTCAAAACTCTCCTCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTTCTCAGGCGACAGCATATGCACACTCAAAACTCTCCTCATGC  700

seq1  ACTTTCCTATTCCTGCCTGATAACCTGGGTTTCCTTTATTAAAAATGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTATTCCTGCCTGATAACCTGGGTTTCCTTTATTAAAAATGATT  750

seq1  AGTACAACTGCTAGTTATTTTCAACAAATAAAGCCATTATGTTCAGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAACTGCTAGTTATTTTCAACAAATAAAGCCATTATGTTCAGAGGG  800

seq1  GACTGTCCATAGTGAGTG-AAAGGTGGCAGGCAGGGGCCTACAGCTCCTA  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GACTGTCCATAGTGAGTGAAAAGGTGGCAGGCAGGGGCCTACAGCTCCTA  850

seq1  GGGGATGGAGAATTCATGTGAAGCCGAATGAAGGATCTTACCATATACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGGAGAATTCATGTGAAGCCGAATGAAGGATCTTACCATATACTG  900

seq1  TCCCCTTTCTAATGGCCTCTCTTTAGTGCTTGTGTCTAATGTTAATGCTT  949
      ||||||||||||||||||||||||||||| ||||||| ||| |||||| |
seq2  TCCCCTTTCTAATGGCCTCTCTTTAGTGC-TGTGTCT-ATG-TAATGC-T  946

seq1  AAAGTACAAGACCCCCATGCAGCTTCCTCTGACTTGGTTTTTAAGTAACC  999
      ||||||| ||| || |||||||||| ||||||| |||||||| |||||||
seq2  AAAGTAC-AGATCCTCATGCAGCTT-CTCTGAC-TGGTTTTT-AGTAACC  992

seq1  TGTAATAAAATGGCATATGCACTTTAAAAAAAATAATTTGTTCAAATCAT  1049
      |   ||||||||||||||||||||| ||||||||||   ||   ||||| 
seq2  TTGTATAAAATGGCATATGCACTTT-AAAAAAATAA---GTGTCAATCA-  1037

seq1  TCCTCTTGCACCTCATCTTTCTAGAGTTGTCCATAATATGTCTCCCTTTT  1099
      ||||| ||||||||||| |||||||| ||||||||||   | | ||||| 
seq2  TCCTC-TGCACCTCATC-TTCTAGAG-TGTCCATAAT---TGTTCCTTT-  1080

seq1  CTCGAAGCAGGCCATCTGCCGCACAGCAGGCCACCTGTTCA  1140
       ||||  |||  ||||||| | | |||||| ||||||||||
seq2  -TCGAGACAG--CATCTGCGGTA-AGCAGG-CACCTGTTCA  1116