BAC Information

Click to search

BAC

Clone NameB6Ng01-088O22
Chromosome1 (Build37)
Map Location 5,792,427 - 5,906,332
singlet/doubletdoublet
Overlap geneNpbwr1
Upstream geneLypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659, Oprk1
Downstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088O22.bB6Ng01-088O22.g
ACCDH901649DH901650
length1,145475
definitionDH901649|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O22, 5' end.DH901650|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,792,427 - 5,793,300)(5,905,852 - 5,906,332)
sequence
gaattcttgggcaaatggatgatgcatctggacaatattatcctgagtga
ggtaacccaatcacaaaagaacacacatgatttgcactcactgataagtg
gatattagcccagaaacttagaatactcaatatataatttgtaaaacaca
tgaaactcaagatgatggaagaacaaaaggtggatacttctttccttctt
agaattgggaacaaaatacccatggaaggagttacagagacaaagttcgg
tgctgatatggaaggaaggaccatctagagactgccccacctggggctcc
atcccataaaccactaccaacccaagcactattgcatatgccagaaagat
tttgctgacaggagcctgatatagctgtctcttgtgagactatgccagtg
cctggcaaatacagaagtggatgctcacagtcatctattggatggaacac
agggcccccaatgaaggagctagagaaagtacccacggagctaaaggagt
ctgcaacgttataggcggaacaacaatatgaactaaccagtatcccccag
agcttttgtctcttgttgcatatgtagcagaagatggcctagatgactag
caatgggatgagaggcccttggtcttgctgagatcatatgccccagtaca
ggaatgccagggccaggaagcaggagtgggtggactggggagcaggctgg
aaggagggaatagtagacttttaggatagcatttgaaatacaaatgaaga
aaatatctaataaaaaaaaaactctaaggaaaaaaaaacacatattttca
acatgatttaaagaaaagccttgatatcacacatcttatacaaagaatgt
agtgagatacattgttttatcatttttagtatcttctatatatttatttt
gagagaagtcatgagaaaacataaaaaaaatcctacagcagtgtaaatac
acaccatgtttttatttataaataactcaataagacatcaatgtaagaca
gctagcttctctgaggaagctggatatcaggtaaacacttggaacatttt
cttcctctgtgattttttcatgtataaaatcattatttctattttctgaa
agaagttaccatttttatgggataaaacaatcacataaactgtgg

cgggactgtggttcccaagtgcagcccgaaatcctgaggcccattccagg
cattcagtaccacaggccctacccaggactgataccacaggccctaacca
ggactgatccgggatttgcccggccttgaggtgaggctggtgtgtagcat
gcctgaggacagcttgggccagggcaccttactattttgtccccacagct
gagggcagggcttgacacctgaacgtagggtaaatggtggggcagtgttg
ttggaacgtgattttaattctctctctatttcactgtgagtaggctccta
ggatgtcccaggcatctcttcctcagcgttaagtctgtgtattttgtttc
tttgctttccaccacggatgacctccctggtaaacagcctggcctgatgc
ttcttaggaacactctaactgcctggccacgcctcactggagatgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_5792427_5793300
seq2: B6Ng01-088O22.b_320_1192

seq1  ATCTAGAGACTGCCCCACCTGGGGCTCCATCCCATAAACCACTACCAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAGACTGCCCCACCTGGGGCTCCATCCCATAAACCACTACCAACC  50

seq1  CAAGCACTATTGCATATGCCAGAAAGATTTTGCTGACAGGAGCCTGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTATTGCATATGCCAGAAAGATTTTGCTGACAGGAGCCTGATAT  100

seq1  AGCTGTCTCTTGTGAGACTATGCCAGTGCCTGGCAAATACAGAAGTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTCTTGTGAGACTATGCCAGTGCCTGGCAAATACAGAAGTGGAT  150

seq1  GCTCACAGTCATCTATTGGATGGAACACAGGGCCCCCAATGAAGGAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGTCATCTATTGGATGGAACACAGGGCCCCCAATGAAGGAGCTA  200

seq1  GAGAAAGTACCCACGGAGCTAAAGGAGTCTGCAACGTTATAGGCGGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTACCCACGGAGCTAAAGGAGTCTGCAACGTTATAGGCGGAACA  250

seq1  ACAATATGAACTAACCAGTATCCCCCAGAGCTTTTGTCTCTTGTTGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGAACTAACCAGTATCCCCCAGAGCTTTTGTCTCTTGTTGCATA  300

seq1  TGTAGCAGAAGATGGCCTAGATGACTAGCAATGGGATGAGAGGCCCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGAAGATGGCCTAGATGACTAGCAATGGGATGAGAGGCCCTTGG  350

seq1  TCTTGCTGAGATCATATGCCCCAGTACAGGAATGCCAGGGCCAGGAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGAGATCATATGCCCCAGTACAGGAATGCCAGGGCCAGGAAGCA  400

seq1  GGAGTGGGTGGACTGGGGAGCAGGCTGGAAGGAGGGAATAGTAGACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGTGGACTGGGGAGCAGGCTGGAAGGAGGGAATAGTAGACTTTT  450

seq1  AGGATAGCATTTGAAATACAAATGAAGAAAATATCTAAT-AAAAAAAAAC  499
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGATAGCATTTGAAATACAAATGAAGAAAATATCTAATAAAAAAAAAAC  500

seq1  TCTAAGGAAAAAAAAACACATA-TTTCAACATGATTTAAAGAAAAGCCTT  548
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTAAGGAAAAAAAAACACATATTTTCAACATGATTTAAAGAAAAGCCTT  550

seq1  GATATCACACATCTTATACAAAGAATGTAGTGAGATACATTGTTTTATCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCACACATCTTATACAAAGAATGTAGTGAGATACATTGTTTTATCA  600

seq1  TTTTTAGTATCTTCTATATATTTATTTTGAGAGAAGTCATGAGAAAACAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTATCTTCTATATATTTATTTTGAGAGAAGTCATGAGAAAACAT  650

seq1  AAAAAAAATCCTACAGCAGTGTAAATACACACCATGTTTTTATTTATAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCCTACAGCAGTGTAAATACACACCATGTTTTTATTTATAAA  700

seq1  TAACTCAATAAGACATCAATGTAAGACAGCTAGCTTCTCTGAGGAAGCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAATAAGACATCAATGTAAGACAGCTAGCTTCTCTGAGGAAGCTG  750

seq1  GATATCAGGTAAACACTTGGAACATTTTCTTCCTCTGTGATTTTTTTCAT  798
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  GATATCAGGTAAACACTTGGAACATTTTCTTCCTCTGTGA-TTTTTTCA-  798

seq1  TGTAT-AAATCATTATTCCTA-TTTCTGAGAGAAG-TACACATTTTATGG  845
      ||||| ||||||||||| ||| ||||||| ||||| |||   ||||||||
seq2  TGTATAAAATCATTATTTCTATTTTCTGAAAGAAGTTACCATTTTTATGG  848

seq1  ATAAAAACAATCAACAATTAAAACTGTGG  874
         ||||||||| |||    |||||||||
seq2  GATAAAACAATC-ACA---TAAACTGTGG  873


seq1: chr1_5905852_5906332
seq2: B6Ng01-088O22.g_69_549 (reverse)

seq1  CACACACACACACACACACACACACACACACATCTCCAGTGAGGCGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACATCTCCAGTGAGGCGTGGC  50

seq1  CAGGCAGTTAGAGTGTTCCTAAGAAGCATCAGGCCAGGCTGTTTACCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTTAGAGTGTTCCTAAGAAGCATCAGGCCAGGCTGTTTACCAGG  100

seq1  GAGGTCATCCGTGGTGGAAAGCAAAGAAACAAAATACACAGACTTAACGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCATCCGTGGTGGAAAGCAAAGAAACAAAATACACAGACTTAACGC  150

seq1  TGAGGAAGAGATGCCTGGGACATCCTAGGAGCCTACTCACAGTGAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGAGATGCCTGGGACATCCTAGGAGCCTACTCACAGTGAAATAG  200

seq1  AGAGAGAATTAAAATCACGTTCCAACAACACTGCCCCACCATTTACCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAATTAAAATCACGTTCCAACAACACTGCCCCACCATTTACCCTA  250

seq1  CGTTCAGGTGTCAAGCCCTGCCCTCAGCTGTGGGGACAAAATAGTAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAGGTGTCAAGCCCTGCCCTCAGCTGTGGGGACAAAATAGTAAGGT  300

seq1  GCCCTGGCCCAAGCTGTCCTCAGGCATGCTACACACCAGCCTCACCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCCCAAGCTGTCCTCAGGCATGCTACACACCAGCCTCACCTCAA  350

seq1  GGCCGGGCAAATCCCGGATCAGTCCTGGTTAGGGCCTGTGGTATCAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGGCAAATCCCGGATCAGTCCTGGTTAGGGCCTGTGGTATCAGTCC  400

seq1  TGGGTAGGGCCTGTGGTACTGAATGCCTGGAATGGGCCTCAGGATTTCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGGGCCTGTGGTACTGAATGCCTGGAATGGGCCTCAGGATTTCGG  450

seq1  GCTGCACTTGGGAACCACAGTCCCGGAATTC  481
      |||||||||||||||||||||||||||||||
seq2  GCTGCACTTGGGAACCACAGTCCCGGAATTC  481


| Home | SequenceCutter | Blast | Download |