BAC Information

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BAC

Clone NameB6Ng01-088O24
Chromosome1 (Build37)
Map Location 27,700,223 - 27,866,902
singlet/doubletdoublet
Overlap geneLOC100040952
Upstream gene4931408C20Rik, LOC677427
Downstream geneEG433281, EG665903, Gm597, LOC435614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088O24.bB6Ng01-088O24.g
ACCDH901653DH901654
length1,0631,129
definitionDH901653|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O24, 5' end.DH901654|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,700,223 - 27,701,262)(27,865,755 - 27,866,902)
sequence
gaattcactctgtagaccaggctggccttgaactcagaaatccacctgcc
tctgactcccaagtgctgggattaaaggcatgtgctaccactgccctgct
tctctttattttttaaccattataatttatgttatgcattcaagtacatg
cttttaataacaaagcttatagtctaagaatacttgtaagtatcaagcaa
tggctcaaataaggtttataatatgtttcacatccaaaacaaaacaaaac
aaaaaataaaaacaaacaaaaacaaaaacaacaacaacaacaaacccaaa
aaaacaaactccataactgaaaaaaatcattctccacttccttccctcca
ccatgttatcctttcactacattccctagccttaggaaaccacgtaaata
aatatatgtttattttgcttattctacccatgtattttcactctagataa
ctaattattcatcccaataggaatctttagagaaagagaatcaagcatat
gtatttataattctgaaaggaagttatattatcccaaacctttgaagctg
gagagtcccacagtagccatctgaggctggagagcaggtaagtatctact
gcttggtccaagatagctgaagattcaaaacagaaggaaccaggagctcc
atcccaggatgaagatctggaagctccttagagcataagttgtgtaagtc
cacaagaaggcatctcctctgacatatagaggaatcaagcttgtgggtca
caagagaaaaatctctgcagcctttcattctcatctagtactttagcatc
cttagtgatgcctccaaaatttagaatggagattctatctttagtctatg
gacccacatgccaatcatctggtggaaacctttcttgaatagattgattt
gacacacaggatcttgtgttactactaatctccacgagactccaaggttg
acaaaattccttcttcaatttctgtgactgctaatggtgtctgctactgt
gggggccttatttctttcagaaaaattccaactcaagaactgaatctttt
ctttattttctgg
gaattctttgttttaatgctcacattttgtttggcttaaatgcagttggg
caaactcatagcactataactatgtctagttatattttattaataatata
aacttttctgaatttggaaggtatttgtttaaataatattttaatttttc
aaaatttgattttttattttataaagaatatataactacaaataacactt
aaagtgtttctgtgctacattttccttttttattttctatgcttagatta
ttatgttttgaaatattgttattcaaaactttagtatatatttttattga
cattaatttttctcttgaaaacttctctaagagatagagtagtcacatgt
taacttgctgaagattgtaggctttctcttctttgggaaaagattcccca
aactgtgactcaaatatatttctctcttaattatgctgagtattctttcc
atatgctaacgtcttccagtgtcttgccctatatttccagtctttccaag
cttgagatatacatttctatgtgtatcaacctcaaatctacagtatcttg
ttatgtcaattagaattttctaggaaaataatgctggttttccttttctt
ttaattagtgtttactaaaaatgcttttgaaacagactatggtgtgtaca
gtaactcaatttaaattagatctatattgcatttgttaaggttttttagt
agcatggtcaaataaaaagtaaattggggaagaaaaaatttattcctact
taaaattttttggtcttactccttcactgagataaattgttacaagaata
ctaagatggaacctagactgtagggacaaaaaaggaaaccaaagaggagc
agcacttgctaactacttcatcctgatttgattagcatatcaaggatgtc
cctgatgggtagaaccatcctaaaaggtgtgtgctctcatatcaatcatg
aatccagaaaatgcctatcacagtaagcctttatgttgtgcttttcttag
ctatgtctgcttgggtcaatctacataaagcagtaagtatacccttacac
acacacacaccacaacttgtaatatcaatacatgttaatttatgtaaaat
aatacagttaaataatttccagtaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_27700223_27701262
seq2: B6Ng01-088O24.b_37_1090

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCC  50

seq1  TCTGACTCCCAAGTGCTGGGATTAAAGGCATGTGCTACCACTGCCCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCCCAAGTGCTGGGATTAAAGGCATGTGCTACCACTGCCCTGCT  100

seq1  TCTCTTTATTTTTTAACCATTATAATTTATGTTATGCATTCAAGTACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTATTTTTTAACCATTATAATTTATGTTATGCATTCAAGTACATG  150

seq1  CTTTTAATAACAAAGCTTATAGTCTAAGAATACTTGTAAGTATCAAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATAACAAAGCTTATAGTCTAAGAATACTTGTAAGTATCAAGCAA  200

seq1  TGGCTCAAATAAGGTTTATAATATGTTTCACATCCAAAACAAAACAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAAATAAGGTTTATAATATGTTTCACATCCAAAACAAAACAAAAC  250

seq1  AAAAAATAAAAACAAACAAAAACAAAAACAACAACAACAACAAACCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAAACAAACAAAAACAAAAACAACAACAACAACAAACCCAAA  300

seq1  AAAACAAACTCCATAACTGAAAAAAATCATTCTCCACTTCCTTCCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACTCCATAACTGAAAAAAATCATTCTCCACTTCCTTCCCTCCA  350

seq1  CCATGTTATCCTTTCACTACATTCCCTAGCCTTAGGAAACCACGTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTATCCTTTCACTACATTCCCTAGCCTTAGGAAACCACGTAAATA  400

seq1  AATATATGTTTATTTTGCTTATTCTACCCATGTATTTTCACTCTAGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGTTTATTTTGCTTATTCTACCCATGTATTTTCACTCTAGATAA  450

seq1  CTAATTATTCATCCCAATAGGAATCTTTAGAGAAAGAGAATCAAGCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATTCATCCCAATAGGAATCTTTAGAGAAAGAGAATCAAGCATAT  500

seq1  GTATTTATAATTCTGAAAGGAAGTTATATTATCCCAAACCTTTGAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATAATTCTGAAAGGAAGTTATATTATCCCAAACCTTTGAAGCTG  550

seq1  GAGAGTCCCACAGTAGCCATCTGAGGCTGGAGAGCAGGTAAGTATCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCCCACAGTAGCCATCTGAGGCTGGAGAGCAGGTAAGTATCTACT  600

seq1  GCTTGGTCCAAGATAGCTGAAGATTCAAAACAGAAGGAACCAGGAGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCCAAGATAGCTGAAGATTCAAAACAGAAGGAACCAGGAGCTCC  650

seq1  ATCCCAGGATGAAGATCTGGAAGCTCCTTAGAGCATAAGTTGTGTAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGATGAAGATCTGGAAGCTCCTTAGAGCATAAGTTGTGTAAGTC  700

seq1  CACAAGAAGGCATCTCCTCTGACATATAGAGGAATCAAGCTTGTGGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAGGCATCTCCTCTGACATATAGAGGAATCAAGCTTGTGGGTCA  750

seq1  CAAGAGAAAACTCTCTGCAGCCTTTCATTCTCATCTAGTACTTTAGCATC  800
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAAAATCTCTGCAGCCTTTCATTCTCATCTAGTACTTTAGCATC  800

seq1  CTTAGTGATGCCTCCAAAATTTAGAATGGAGATTCTATCTTTAGTCTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGATGCCTCCAAAATTTAGAATGGAGATTCTATCTTTAGTCTATG  850

seq1  GACCCACATGCCAATCATCT-GTGGAAA-CTTTCTTGAATAGAATGATTT  898
      |||||||||||||||||||| ||||||| |||||||||||||| ||||||
seq2  GACCCACATGCCAATCATCTGGTGGAAACCTTTCTTGAATAGATTGATTT  900

seq1  GACACACA-GATC-TGTGTTACTACTAATCTCCACGAGACT-CAAGGTTG  945
      |||||||| |||| ||||||||||||||||||||||||||| ||||||||
seq2  GACACACAGGATCTTGTGTTACTACTAATCTCCACGAGACTCCAAGGTTG  950

seq1  ACAAAATTCC-TCTTCAATTTCTGTGACTGCTAATGTGTTCTGCTACTGT  994
      |||||||||| |||||||||||||||||||||||||   |||||||||||
seq2  ACAAAATTCCTTCTTCAATTTCTGTGACTGCTAATGGTGTCTGCTACTGT  1000

seq1  -GGGGCCCTAT---CTTCAGAAAA--TCCAACTCA--GACTGATTCTTTT  1036
       |||||| |||    |||||||||  |||||||||   ||||| ||||||
seq2  GGGGGCCTTATTTCTTTCAGAAAAATTCCAACTCAAGAACTGAATCTTTT  1050

seq1  CTTT  1040
      ||||
seq2  CTTT  1054

seq1: chr1_27865755_27866902
seq2: B6Ng01-088O24.g_68_1196 (reverse)

seq1  TATATTACTGGAAAATATATTTAAACTGTATATATATTTTACATAAAATT  50
      |||||||||||||| ||   || ||||||||   ||||||||||||| | 
seq2  TATATTACTGGAAATTA---TTTAACTGTAT---TATTTTACATAAATT-  43

seq1  TAAAACATGTATGGAATATATTACAAAGTGT-GTGTGTGTGTGTGTAAGG  99
         ||||||||| |   |||||||||  ||| ||||||||||||||||||
seq2  ---AACATGTATTG---ATATTACAAGTTGTGGTGTGTGTGTGTGTAAGG  87

seq1  TGTATACTTACTGCTTTATGTAGAATTGACACAAAGCAGACATAGCTAAG  149
       |||||||||||||||||||||| |||||| | |||||||||||||||||
seq2  -GTATACTTACTGCTTTATGTAG-ATTGAC-CCAAGCAGACATAGCTAAG  134

seq1  AAAAGGCAACAACAATAAAGGCTTACTGTGATAAGGCATTTTCTGGATTC  199
      |||||   ||||| |||||||||||||||||| |||||||||||||||||
seq2  AAAAG--CACAAC-ATAAAGGCTTACTGTGAT-AGGCATTTTCTGGATTC  180

seq1  ATGATTGATATGAGAGCACACACCCTTTTAGGATGGTTCTACCCATCAGG  249
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGATTGATATGAGAGCACACA-CCTTTTAGGATGGTTCTACCCATCAGG  229

seq1  GACATCC-TGATATGCTAATCAAATCAGGATGAAGTAGTTAGCAAGTGCT  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCTTGATATGCTAATCAAATCAGGATGAAGTAGTTAGCAAGTGCT  279

seq1  GCTCCTCTTTGGTTTCCTTTTTTGTCCCTACAGTCTAGGTTCCATCTTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCTTTGGTTTCCTTTTTTGTCCCTACAGTCTAGGTTCCATCTTAG  329

seq1  TATTCTTGTAACAATTTATCTCAGTGAAGGAGTAAGACCAAAAAATTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTGTAACAATTTATCTCAGTGAAGGAGTAAGACCAAAAAATTTTA  379

seq1  AGTAGGAATAAATTTTTTCTTCCCCAATTTACTTTTTATTTGACCATGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAATAAATTTTTTCTTCCCCAATTTACTTTTTATTTGACCATGCT  429

seq1  ACTAAAAAACCTTAACAAATGCAATATAGATCTAATTTAAATTGAGTTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAACCTTAACAAATGCAATATAGATCTAATTTAAATTGAGTTAC  479

seq1  TGTACACACCATAGTCTGTTTCAAAAGCATTTTTAGTAAACACTAATTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACACCATAGTCTGTTTCAAAAGCATTTTTAGTAAACACTAATTAA  529

seq1  AAGAAAAGGAAAACCAGCATTATTTTCCTAGAAAATTCTAATTGACATAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGAAAACCAGCATTATTTTCCTAGAAAATTCTAATTGACATAA  579

seq1  CAAGATACTGTAGATTTGAGGTTGATACACATAGAAATGTATATCTCAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACTGTAGATTTGAGGTTGATACACATAGAAATGTATATCTCAAG  629

seq1  CTTGGAAAGACTGGAAATATAGGGCAAGACACTGGAAGACGTTAGCATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAGACTGGAAATATAGGGCAAGACACTGGAAGACGTTAGCATAT  679

seq1  GGAAAGAATACTCAGCATAATTAAGAGAGAAATATATTTGAGTCACAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAATACTCAGCATAATTAAGAGAGAAATATATTTGAGTCACAGTT  729

seq1  TGGGGAATCTTTTCCCAAAGAAGAGAAAGCCTACAATCTTCAGCAAGTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATCTTTTCCCAAAGAAGAGAAAGCCTACAATCTTCAGCAAGTTA  779

seq1  ACATGTGACTACTCTATCTCTTAGAGAAGTTTTCAAGAGAAAAATTAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGACTACTCTATCTCTTAGAGAAGTTTTCAAGAGAAAAATTAATG  829

seq1  TCAATAAAAATATATACTAAAGTTTTGAATAACAATATTTCAAAACATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAAATATATACTAAAGTTTTGAATAACAATATTTCAAAACATAA  879

seq1  TAATCTAAGCATAGAAAATAAAAAAGGAAAATGTAGCACAGAAACACTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAAGCATAGAAAATAAAAAAGGAAAATGTAGCACAGAAACACTTT  929

seq1  AAGTGTTATTTGTAGTTATATATTCTTTATAAAATAAAAAATCAAATTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTATTTGTAGTTATATATTCTTTATAAAATAAAAAATCAAATTTT  979

seq1  GAAAAATTAAAATATTATTTAAACAAATACCTTCCAAATTCAGAAAAGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAAAATATTATTTAAACAAATACCTTCCAAATTCAGAAAAGTT  1029

seq1  TATATTATTAATAAAATATAACTAGACATAGTTATAGTGCTATGAGTTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATTAATAAAATATAACTAGACATAGTTATAGTGCTATGAGTTTG  1079

seq1  CCCAACTGCATTTAAGCCAAACAAAATGTGAGCATTAAAACAAAGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGCATTTAAGCCAAACAAAATGTGAGCATTAAAACAAAGAATTC  1129