BAC Information

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BAC

Clone NameB6Ng01-089L13
Chromosome1 (Build37)
Map Location 105,868,336 - 105,869,138
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089L13.bB6Ng01-089L13.g
ACCDH902224DH902225
length1,1711,178
definitionDH902224|Mus musculus domesticus DNA, BAC clone: B6Ng01-089L13, 5' end.DH902225|Mus musculus domesticus DNA, BAC clone: B6Ng01-089L13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctagtggtgtggagaatctctggtatgagctacaaacctaggga
aatagaaactcccaggaatctacaaggatgaccctagctaagactcctat
taatggagaatatggagcctgaaccaggcatctcctgttgccgggcaaga
atttcaaagaaagactgggaacaccaccccaaccactaaaacttcgacct
acaatgtctactgactacaaagtatgcagaaataaagatggagcagaaac
tgagcaaatggcaaaccaatgactggcccaaatggagaaccatgacatga
gagagagcccaccctgaaactattaatgatattctgcaatacttgtagac
agaaacatagcataactcttatctgagtgacttcccccagcaacttatgg
atacagatgcagagattcacagtaaaataataggtggagcttggaaaatc
ttgtagaggaggggaaggaagtagtgaaggacccagaaatgtcaagggga
caacaagaaaacatacataattaactaactcataaagactgaagcacaaa
tcaaaaaaaatatgcatgagatggacctacgtcctctgaaaacatgtagt
atatgtgcaacttggtcttcatgtaaaacctgtaaaagcaggagaaggtg
ctggctctgaatatattgtcaatttttagatctctttcccctaacgtgtc
tactttgcctagactaaatagaagagatacacctagcccttctgcaactt
aatatgccaagtcaggttgttatccatgtaaggcctccagatttctgagg
agaaatgggagcagagaaggaggcactggggtgagaggccataggagaag
ctgtgggcacattgtaaagttaattaattgattaattaactgtgatttaa
ttaattaattaacaaaagaagtaaaaaatgtgtaagattttgggtaaatt
gttaagagaaagaaagtttctaaatgttaaaatgaagaaaaaaacacttc
ttatgcatataaatctaattgtaatattacttttaagaattgaccaatct
tgcaaaagaattttcacatggcctaggttggaaaacaaccctaatgctca
ataaacctctccaccgtcaaggatttttccatcaaaaatataagatttgc
agtcccatagcaaagggagag
gaattctttagttattgttatatttagatattagtcatctatcagatata
tggttagtgaagatactttcccagtctgtgggctgctgatttgtcctgtt
gactgtgcttttcagtttcaacaacttccatatttcaatagttggtgtta
gggcctaaccctttagttttctgttcaggaaatttatcctataataatgt
gtttaaggctgtttcctattttctattctattaggtttagtgtatccagt
tttatgttaagttccttgatccaattggatttgaggtttgtgcatgatga
taaataaggatctatttgccttcttctacttagagttttccagttagacc
agtaacatttatttaagatgttttcttctttccattttatggtttttgac
ctctatttcaaaattcaagcgtccatatgtgtctaggtttatttctggat
ctttccttctattccattgatcaacctgtctgttactataacaacacgat
gcagtttttttagtcattattactcaagagttcatcttaatataaggaat
gataattatgccagacgttcttttgtttatagaattgttttatgggatcc
tgggtttttcctttgtccatatgaagtctagaattgcactttcaagttct
ttaacatttgtgttggagtgatatgtattgcattaaatttgtagattgct
tttggtaagatagccattttaactatgttaataccactgacccacaatca
tggataatcttttccatcttttgaaagcttctttaattttaattctttag
gaacttgaagtaattgttgtttcagattttttttttatttgcttggttag
aactatgccaagatttttttctttatttctagctattgtgaatgctggct
ttcttaattccttttttttttcctgtttgtcatctatataaaggaaccta
cttatttctttgtggtaattttaaatccagccaggttgtgaagttggtta
ttagctattagatagttttctggttgaatttgggggaatcactaataata
tacggtcatatcatgaatgaggttttccaataagaattccgtgatctcct
ttgtgtcctcatgctctgattgaaagtctagctatataattgaaaggaaa
gaaaagaatatcgaagaagacgaatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105868336_105869138
seq2: B6Ng01-089L13.b_430_1219

seq1  TTCCCCCAGCAACTTATGGATACAGATGCAGAGATTCACAGTAAAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCAGCAACTTATGGATACAGATGCAGAGATTCACAGTAAAATAAT  50

seq1  AGGTGGAGCTTGGAAAATCTTGTAGAGGAGGGGAAGGAAGTAGTGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGCTTGGAAAATCTTGTAGAGGAGGGGAAGGAAGTAGTGAAGGA  100

seq1  CCCAGAAATGTCAAGGGGACAACAAGAAAACATACATAATTAACTAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATGTCAAGGGGACAACAAGAAAACATACATAATTAACTAACTC  150

seq1  ATAAAGACTGAAGCACAAATCAAAAAAAATATGCATGAGATGGACCTACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACTGAAGCACAAATCAAAAAAAATATGCATGAGATGGACCTACG  200

seq1  TCCTCTGAAAACATGTAGTATATGTGCAACTTGGTCTTCATGTAAAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGAAAACATGTAGTATATGTGCAACTTGGTCTTCATGTAAAACCT  250

seq1  GTAAAAGCAGGAGAAGGTGCTGGCTCTGAATATATTGTCAATTTTTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCAGGAGAAGGTGCTGGCTCTGAATATATTGTCAATTTTTAGAT  300

seq1  CTCTTTCCCCTAACGTGTCTACTTTGCCTAGACTAAATAGAAGAGATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCCCTAACGTGTCTACTTTGCCTAGACTAAATAGAAGAGATACA  350

seq1  CCTAGCCCTTCTGCAACTTAATATGCCAAGTCAGGTTGTTATCCATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCCTTCTGCAACTTAATATGCCAAGTCAGGTTGTTATCCATGTAA  400

seq1  GGCCTCCAGATTTCTGAGGAGAAATGGGAGCAGAGAAGGAGGCACTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAGATTTCTGAGGAGAAATGGGAGCAGAGAAGGAGGCACTGGGG  450

seq1  TGAGAGGCCATAGGAGAAGCTGTGGGCACATTGTAAAGTTAATTAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCCATAGGAGAAGCTGTGGGCACATTGTAAAGTTAATTAATTGA  500

seq1  TTAATTAACTGTGATTTAATTAATTAATTAACAAAAGAAAGTAAAAAATG  550
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAATTAACTGTGATTTAATTAATTAATTAACAAAAG-AAGTAAAAAATG  549

seq1  TGTAAGATTTTGGGTAAAATTGTTAAGAGAAAGAAAAGTTTCTAAAATGT  600
      ||||||||||||||| ||||||||||||||||| ||||||||| ||||||
seq2  TGTAAGATTTTGGGT-AAATTGTTAAGAGAAAG-AAAGTTTCT-AAATGT  596

seq1  TAAAATGAAG-AAAAAACACTTCCTTATGCATATAAATCTAAATGTAATA  649
      |||||||||| ||||||||||| ||||||||||||||||||| |||||||
seq2  TAAAATGAAGAAAAAAACACTT-CTTATGCATATAAATCTAATTGTAATA  645

seq1  TTACTTTTAAGAAATGACCAATCTTGCAGAAAGAAATTTTCACAATGGCT  699
      ||||||||||||| |||||||||||||| |||| ||||||||||  | ||
seq2  TTACTTTTAAGAATTGACCAATCTTGCA-AAAG-AATTTTCACATGGCCT  693

seq1  AAGTTTGAAAACAACTCTAAATGCTTCAAATTAAACCTCTCACCTGTCTA  749
      | ||| ||||||||| || ||||| ||||  ||||||||||  | ||| |
seq2  AGGTTGGAAAACAACCCT-AATGC-TCAA--TAAACCTCTCCACCGTCAA  739

seq1  TGATTTTTCTCATCATAAATATTAAGTATTGCAGTCCCATAAGCAATGGG  799
       |||||||| ||||| ||||| ||||  |||||||||||| ||||| |||
seq2  GGATTTTTC-CATCAAAAATA-TAAGATTTGCAGTCCCAT-AGCAAAGGG  786

seq1  AGAG  803
      ||||
seq2  AGAG  790