BAC Information

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BAC

Clone NameB6Ng01-089M05
Chromosome1 (Build37)
Map Location 137,127,144 - 137,237,823
singlet/doubletdoublet
Overlap geneLOC100043064, Elf3, Rnpep, Timm17a, Lmod1
Upstream geneAdora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1
Downstream geneTmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089M05.bB6Ng01-089M05.g
ACCDH902256DH902257
length969854
definitionDH902256|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M05, 5' end.DH902257|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,127,144 - 137,128,119)(137,236,976 - 137,237,823)
sequence
gaattccaatcatttgctcaaggtcacacggcgaccaaaaggcagtatag
gctgggatctgaggtttagtaacttctatagtctgcagggttaaccaggt
ttggagaaaaagagttcgagatcactcacaaagtttatgggcaaaccctt
cttttaaaaatttacaaaattcttagaggccgggacaatgctcggttggt
agagaacttgtctagaatgtacaaagccccaagatggctctttagcacaa
tataggccagagtggtaaagacgcccagaactccaacactcagaaaatgg
gcaagagggagagggaccttaagtcatccatagctgcaaaggcagccagt
ctctagggaactttttccttttcttttttctttctttctttttttttttt
tttttttgtttcattatttttgagatagcgtctcataccctaggctaaca
ctgtgtctgtagctggtcttccatctcccatgtgctgagattacaagcat
gtaccactatacttgactgtttaagtaggaatattaaaggcagatgtgat
attgcaaacctgtaatcccagggctcagaaggcaaagctcacaggatttc
cgtgagttggaggctagcctgaactacactgtgtgatcctgtttaagaaa
ataaatacacacaaaaaaatagtttttaaggaaaattataagtagcctgt
taaatctgttaaatccttgatgggacatagaaacagagattccttttaat
tatattcagagaaaaatgtattttgtttggttagagacagggtcttatta
tacaaccccagcttttcctagaacttactatgtagacaagatggccttaa
gtcacaaagatttgcctgcctctgcctcccaagtgctgacatcaagcctg
agccacaatttgtggcagaaagtctttttttttttctttttctttttttt
ggttttcgagacaggtttc
gaattctttatgcagaccaggccggcctctaactcacagagattagcctg
cctctgctgagattaaagacgtgtgccacataaaccaggcatggcgagac
acacctttagtaccacactggggaggcagaggcaggtgggtctctaagtt
ctaggacacccagggatgcagagtaaaaacactgttgtgaaaaaacacaa
acaaacaaacaaacaaaggagacatgtgccaccatgcctggctcacactg
ctctttaaagcaggactgtgggacctggggatgtatctgaagacttcagc
ctgacccccttgaccacagaaacagctgcatctccagtattttatggtca
ctaccaaaatccttcctcgattctgagattaagttaagcttagctgtggc
agaggacaggggacaggtgtgtcatccatcgctcagtggcagacatgctc
ccattgggataggtgagatgacccattttcagaaaatgtagtagaagcaa
aatgacctaatgccagcctttggtagatggaattctagcaggaaatacca
atcattaattcctcaaagcatccattataaataatgaatcaatttccgtc
ttatggactgagaacagggttggctgccctgcatctttgtgagagatatg
ttgaaatgagcttcctaaattcatgtgttagagactcggtccccgcctgg
ggtggtggcacacgcctttaatcccagcaggcagatttctgagtttcgag
gccagcctcgtctacaaagtgagttctaggacagccagggctacacagag
aaaccctgtctcaaaaatactaaaaaaccaaacaccaaactaaatccaaa
aaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_137127144_137128119
seq2: B6Ng01-089M05.b_43_1011

seq1  GAATTCCAATCATTTGCTCAAGGTCACACGGCGACCAAAAGGCAGTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCATTTGCTCAAGGTCACACGGCGACCAAAAGGCAGTATAG  50

seq1  GCTGGGATCTGAGGTTTAGTAACTTCTATAGTCTGCAGGGTTAACCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATCTGAGGTTTAGTAACTTCTATAGTCTGCAGGGTTAACCAGGT  100

seq1  TTGGAGAAAAAGAGTTCGAGATCACTCACAAAGTTTATGGGCAAACCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAAAAGAGTTCGAGATCACTCACAAAGTTTATGGGCAAACCCTT  150

seq1  CTTTTAAAAATTTACAAAATTCTTAGAGGCCGGGACAATGCTCGGTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAATTTACAAAATTCTTAGAGGCCGGGACAATGCTCGGTTGGT  200

seq1  AGAGAACTTGTCTAGAATGTACAAAGCCCCAAGATGGCTCTTTAGCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTTGTCTAGAATGTACAAAGCCCCAAGATGGCTCTTTAGCACAA  250

seq1  TATAGGCCAGAGTGGTAAAGACGCCCAGAACTCCAACACTCAGAAAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCCAGAGTGGTAAAGACGCCCAGAACTCCAACACTCAGAAAATGG  300

seq1  GCAAGAGGGAGAGGGACCTTAAGTCATCCATAGCTGCAAAGGCAGCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGGAGAGGGACCTTAAGTCATCCATAGCTGCAAAGGCAGCCAGT  350

seq1  CTCTAGGGAACTTTTTCCTTTTCTTTTTTCTTTCTTTCTTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGAACTTTTTCCTTTTCTTTTTTCTTTCTTTCTTTTTTTTTTTT  400

seq1  TTTTTTTGTTTCATTATTTTTGAGATAGCGTCTCATACCCTAGGCTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTCATTATTTTTGAGATAGCGTCTCATACCCTAGGCTAACA  450

seq1  CTGTGTCTGTAGCTGGTCTTCCATCTCCCATGTGCTGAGATTACAAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGTAGCTGGTCTTCCATCTCCCATGTGCTGAGATTACAAGCAT  500

seq1  GTACCACTATACTTGACTGTTTAAGTAGGAATATTAAAGGCAGATGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACTATACTTGACTGTTTAAGTAGGAATATTAAAGGCAGATGTGAT  550

seq1  ATTGCAAACCTGTAATCCCAGGGCTCAGAAGGCAAAGCTCACAGGATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAACCTGTAATCCCAGGGCTCAGAAGGCAAAGCTCACAGGATTTC  600

seq1  CGTGAGTTGGAGGCTAGCCTGAACTACACTGTGTGATCCTGTTTAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGTTGGAGGCTAGCCTGAACTACACTGTGTGATCCTGTTTAAGAAA  650

seq1  ATAAATACACACAAAAAAATAG-TTTTAAGGAAAATTATAAGTAGCCTGT  699
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAAATACACACAAAAAAATAGTTTTTAAGGAAAATTATAAGTAGCCTGT  700

seq1  TAAATCTGTTAAATCCTTGATGGGACATAGAAACAGAGATTCCTTTTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAAATCTGTTAAATCCTTGATGGGACATAGAAACAGAGATTCCTTTT-AA  749

seq1  TTATATTCAGAGAAAAATGTA-TTTGTTTGGTTAGAGACAGGGTCTTATT  798
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTATATTCAGAGAAAAATGTATTTTGTTTGGTTAGAGACAGGGTCTTATT  799

seq1  ATACAACCCCAGC-TTTCCTAGAACTTACTATGTAGACAAGGATGGCCTT  847
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  ATACAACCCCAGCTTTTCCTAGAACTTACTATGTAGACAA-GATGGCCTT  848

seq1  AAGTCACAAAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGACATCAAAGG  897
      ||||||||||||| |||||||||||||||||||||||||||||||||  |
seq2  AAGTCACAAAGATTTGCCTGCCTCTGCCTCCCAAGTGCTGACATCAA--G  896

seq1  CCTGAGCCACAATATGTGGCAGGAAAGTCTTTTTTTTTTTTCTTTTTTCT  947
      ||||||||||||| ||||||| ||||||||||||||||||   |||||||
seq2  CCTGAGCCACAATTTGTGGCA-GAAAGTCTTTTTTTTTTT--CTTTTTCT  943

seq1  TTTTTTTTGGTTTTTCGAGACAGGGTTTC  976
      |||||||  | ||||||||||| ||||||
seq2  TTTTTTT--GGTTTTCGAGACA-GGTTTC  969

seq1: chr1_137236976_137237823
seq2: B6Ng01-089M05.g_70_923 (reverse)

seq1  TGTTTTTG------TTTTGGTGTTTTGGTTTTTTAGTTTTTTTGAGACAG  44
      ||||||||       ||||||| |||||||||||||| ||||||||||||
seq2  TGTTTTTGGATTTAGTTTGGTG-TTTGGTTTTTTAGTATTTTTGAGACAG  49

seq1  GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACGAGG  94
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACGAGG  99

seq1  CTGGCCTCG-AACTCAGAAATCTGCCTGCTGGGATTAAAGGCGTGTGCCA  143
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCGAAACTCAGAAATCTGCCTGCTGGGATTAAAGGCGTGTGCCA  149

seq1  CCACCCCAGGCGGGGACCGAGTCTCTAACACATGAATTTAGGAAGCTCAT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCAGGCGGGGACCGAGTCTCTAACACATGAATTTAGGAAGCTCAT  199

seq1  TTCAACATATCTCTCACAAAGATGCAGGGCAGCCAACCCTGTTCTCAGTC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATATCTCTCACAAAGATGCAGGGCAGCCAACCCTGTTCTCAGTC  249

seq1  CATAAGACGGAAATTGATTCATTATTTATAATGGATGCTTTGAGGAATTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACGGAAATTGATTCATTATTTATAATGGATGCTTTGAGGAATTA  299

seq1  ATGATTGGTATTTCCTGCTAGAATTCCATCTACCAAAGGCTGGCATTAGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGGTATTTCCTGCTAGAATTCCATCTACCAAAGGCTGGCATTAGG  349

seq1  TCATTTTGCTTCTACTACATTTTCTGAAAATGGGTCATCTCACCTATCCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGCTTCTACTACATTTTCTGAAAATGGGTCATCTCACCTATCCC  399

seq1  AATGGGAGCATGTCTGCCACTGAGCGATGGATGACACACCTGTCCCCTGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGCATGTCTGCCACTGAGCGATGGATGACACACCTGTCCCCTGT  449

seq1  CCTCTGCCACAGCTAAGCTTAACTTAATCTCAGAATCGAGGAAGGATTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCACAGCTAAGCTTAACTTAATCTCAGAATCGAGGAAGGATTTT  499

seq1  GGTAGTGACCATAAAATACTGGAGATGCAGCTGTTTCTGTGGTCAAGGGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGACCATAAAATACTGGAGATGCAGCTGTTTCTGTGGTCAAGGGG  549

seq1  GTCAGGCTGAAGTCTTCAGATACATCCCCAGGTCCCACAGTCCTGCTTTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCTGAAGTCTTCAGATACATCCCCAGGTCCCACAGTCCTGCTTTA  599

seq1  AAGAGCAGTGTGAGCCAGGCATGGTGGCACATGTCTCCTTTGTTTGTTTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTGTGAGCCAGGCATGGTGGCACATGTCTCCTTTGTTTGTTTG  649

seq1  TTTGTTTGTGTTTTTTCACAACAGTGTTTTTACTCTGCATCCCTGGGTGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTGTTTTTTCACAACAGTGTTTTTACTCTGCATCCCTGGGTGT  699

seq1  CCTAGAACTTAGAGACCCACCTGCCTCTGCCTCCCCAGTGTGGTACTAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACTTAGAGACCCACCTGCCTCTGCCTCCCCAGTGTGGTACTAAA  749

seq1  GGTGTGTCTCGCCATGCCTGGTTTATGTGGCACACGTCTTTAATCTCAGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCTCGCCATGCCTGGTTTATGTGGCACACGTCTTTAATCTCAGC  799

seq1  AGAGGCAGGCTAATCTCTGTGAGTTAGAGGCCGGCCTGGTCTGCATAAAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCTAATCTCTGTGAGTTAGAGGCCGGCCTGGTCTGCATAAAG  849

seq1  AATTC  848
      |||||
seq2  AATTC  854