BAC Information

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BAC

Clone NameB6Ng01-089M17
Chromosome3 (Build37)1 (Build37)
Map Location 44,069,503 - 44,070,021174,665,141 - 174,665,691
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089M17.bB6Ng01-089M17.g
ACCDH902280DH902281
length969931
definitionDH902280|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M17, 5' end.DH902281|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,069,503 - 44,070,021)(174,665,141 - 174,665,691)
sequence
gaattctctttaaaaaatgttattgattcttggtcttaaagcataagcca
ttgataagctcaggaaattttctagtgtttccatttgttcaaggttcttc
cacactttctctattagtttcactgctcttggttttatgtggaggtcctt
gatccacttggaattgagatgtgtataaggagataaaaattgaccaattt
gcattcttctagatacagaccaccagttaaaccaacaacatttcttgaaa
atgctgtctttttttcactggatggttttagttccttcgtcaaagatcaa
gtgatcataggtatgtgggttcatttctgggtcttgttttttgttttgtt
ttgttttgttttcaagacagggtttctctgtgttgccctagtctcttgga
actcattttgtagactaggctggctctgggtctttaattttattctagtg
acctacctgcctgtctctgtaccaatactatatagtttttactactatta
ctttttttacagcttgaggttagggatagtgattcccaaagaagttcttt
tatttttgagaatagtttttgatatcctgggttcttggctattccaaatg
aatttgcaaagtgccccttctaactctatgaaaaattgagttagaacttt
gatggcaattgcagtgaatctgtacattggtatcttcaagataggcaatt
ttactagaattcctgccgaaccatgagcacgggagatctttcagtcttcg
gagatcgtctttgatttctttctccagagacttgaagtttttgtcacaca
gacctttcacgtgcttgattagagtcacagcaaggtattttacattattt
gtgataattatgaagggtcatgttgcccaattttctttctcatactgtta
atcctttgagtatggaaagctactgatttggttgagttcattttatttcc
agccacattcctgaagttg
gaattcctgatctttccaacacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaaggagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggattgatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagttccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaactgcttctatttcttta
ggtgatatgggactgtttagatggtcaacttgatcctgattcaactttgg
tacctggtatctgtccagaaatttgtccatttcgtccaggttttccagtt
ttgttgagtatagccttttgtagaaggatctgatggtgttttggatttct
tcaggatctgttgttatgtctcccttttcagttctgattttgttaattag
gattttgtccctgtgccctttagtgagtctagctaagggtttatctatct
tgttgattttctcaaagaaccaactcctcgtttggttaattctttgaata
gttcttgtttccacttggttgatttcacccctgagtttaattatttcctg
ccgtctactctcttgggtgaatttgcttcctttttttctagggctttaga
tgtgttgtcagctgctagtatgtgctgtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44069503_44070021
seq2: B6Ng01-089M17.b_47_565

seq1  GAATTCTCTTTAAAAAATGTTATTGATTCTTGGTCTTAAAGCATAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAAAAAATGTTATTGATTCTTGGTCTTAAAGCATAAGCCA  50

seq1  TTGATAAGCTCAGGAAATTTTCTAGTGTTTCCATTTGTTCAAGGTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAGCTCAGGAAATTTTCTAGTGTTTCCATTTGTTCAAGGTTCTTC  100

seq1  CACACTTTCTCTATTAGTTTCACTGCTCTTGGTTTTATGTGGAGGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTCTCTATTAGTTTCACTGCTCTTGGTTTTATGTGGAGGTCCTT  150

seq1  GATCCACTTGGAATTGAGATGTGTATAAGGAGATAAAAATTGACCAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACTTGGAATTGAGATGTGTATAAGGAGATAAAAATTGACCAATTT  200

seq1  GCATTCTTCTAGATACAGACCACCAGTTAAACCAACAACATTTCTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTCTAGATACAGACCACCAGTTAAACCAACAACATTTCTTGAAA  250

seq1  ATGCTGTCTTTTTTTCACTGGATGGTTTTAGTTCCTTCGTCAAAGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCTTTTTTTCACTGGATGGTTTTAGTTCCTTCGTCAAAGATCAA  300

seq1  GTGATCATAGGTATGTGGGTTCATTTCTGGGTCTTGTTTTTTGTTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCATAGGTATGTGGGTTCATTTCTGGGTCTTGTTTTTTGTTTTGTT  350

seq1  TTGTTTTGTTTTCAAGACAGGGTTTCTCTGTGTTGCCCTAGTCTCTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTCAAGACAGGGTTTCTCTGTGTTGCCCTAGTCTCTTGGA  400

seq1  ACTCATTTTGTAGACTAGGCTGGCTCTGGGTCTTTAATTTTATTCTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTTGTAGACTAGGCTGGCTCTGGGTCTTTAATTTTATTCTAGTG  450

seq1  ACCTACCTGCCTGTCTCTGTACCAATACTATATAGTTTTTACTACTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCTGCCTGTCTCTGTACCAATACTATATAGTTTTTACTACTATTA  500

seq1  CTTTTTTTACAGCTTGAGG  519
      |||||||||||||||||||
seq2  CTTTTTTTACAGCTTGAGG  519

seq1: chr1_174665141_174665691
seq2: B6Ng01-089M17.g_69_616 (reverse)

seq1  AAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTA  50

seq1  AAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGA  100
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  AAGAAATAGAAGCAG---TTAATAGTCTCCCAACCAAAAAAAGCCCAGGA  97

seq1  CCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAAT  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAAT  147

seq1  TCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTAC  200
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGAACTCTAC  197

seq1  CCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAA  247

seq1  GACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGA  297

seq1  TGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA  347

seq1  AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGA  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCATCAATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGA  397

seq1  TGGTTTAATATACGAAAATCCATCAACGTAATCCATTATATAAACAAACT  450
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACT  447

seq1  CAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTG  500
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAAGACAAAAACCACATGATCATCTCCTTAGATGCAGAAAAAGCATTTG  497

seq1  ACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATT  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACAAGATCCAACACCCATTCATGATAAAAGTGTTGGAAAGATCAGGAATT  547

seq1  C  551
      |
seq2  C  548