BAC Information

Click to search

BAC

Clone NameB6Ng01-090A12
Chromosome1 (Build37)
Map Location 195,452,611 - 195,577,904
singlet/doubletdoublet
Overlap genenone
Upstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208, EG623172, Plxna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090A12.bB6Ng01-090A12.g
ACCDH902444DH902445
length9331,082
definitionDH902444|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A12, 5' end.DH902445|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(195,452,611 - 195,453,539)(195,576,825 - 195,577,904)
sequence
gaattccacattctgtaccaccagttgtagggctgcctcatctggactat
ctcctctcctcttccctctttctagatccaggcagatctagatctagaga
caggcagatctagatccagtttgtttactttgctgttttcccaaagcaat
taaatatatcgatggaggacttatcagtgcttcacaaatcatttattttg
ttgtcattgtttacatattggccttctctatccaactttgtcatttttcg
gcttcagcatctagtacaatacctggcagagatgctctaaagttacaaaa
tagaagagagaggaaaaaatagaaaaaaagagagagagagagagagagag
agagagagagagagagagagaggaaggaaggaaggaaggaaggaaggaag
gaagaaagaaagaaagaaagaaagaaagaaagaaataaagaaagaaagaa
gactgtaccatgtggaaaagaagagcaagaagagatctatagggaccagg
ctgggaaggcaacatcatccctacccctaccctgtatagactctccaatc
ctgcctccagtccctctgcaggcaccatgtcttccatcattttcttcctg
ttttgtcagttctagttgctctcaactgctgcagactgacattgacccct
tgtgacaagcagatcaactcctaatctgctagagctccagtttttctggg
atgttggcaagctcttgacaggtccagaggagaggaaagctgtcagctct
cactcttcagcactctgaacagctgaacagccaattccaaggctcaattt
gcaccttttggtcccccgggggctgctatgacttttgattgctgctttag
ggctcttcagtagtttctctttaagggataagtaggatgggagtgggtga
ggaacaacattattagcccctattccttgcatc
gaattccaacacaattgctaaaatttgctttgaggctgtctgcatagaga
aatgtcttgagaatgagtgataaactagcatggaattgagtatgctgagg
atatatatatatatttatgtatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatttat
atatatatacatgcagttttctgagaatctcacaaataagactatgctct
tcacttacagttttaaagaagccttagcttacttgtgagtccttgtattc
tatggttttaccaaataaaaatgggggtataaggagattctttagaaacc
ctttgagcaaagtaacttcagaagccacaaaatccaaacatggtgtcctg
gtttgctttctgttgctgtgatagaaccctgatcaaaaccaactggggca
ggcaagcatgggttcattttccactttgcagactacagtctgtagtaaag
agacgtcagagcaggaagctggaggcaggaactgaagcagaaaccataga
gaaatgctactttctggcctgcttcccaggacatactcagccttttctta
cacaactcattgctacctcaggaatggcaccacccacagtgggttggact
ctctccatatagatcattaggaggccccactttcaggtgattctagcttc
tgtcgagttaacagaaggattaatcagcacagatggcaatggctacgact
tttcagcgtgtctctcttttgagaagcccacacccacacttgggtaggta
ctgtctttttgctaggtacctcctgctattaatgccgatggattaaatcc
ctgtaaaagtctcttcatcacaaccttaaaacctattttatacttcctca
tcctgaaattgtcttctgcagtgaatcaagattccaggctttgcctgaga
gagctagaacttctcacacattagatattagcagccagcatggagctaag
cctcatgaccacttctactgccacagacagcatctaaaagcttcaaaaaa
tggacgatgatgaactgtgtccctagaatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195452611_195453539
seq2: B6Ng01-090A12.b_49_981

seq1  GAATTCCACATTCTGTACCACCAGTTGTAGGGCTGCCTCATCTGGACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTCTGTACCACCAGTTGTAGGGCTGCCTCATCTGGACTAT  50

seq1  CTCCTCTCCTCTTCCCTCTTTCTAGATCCAGGCAGATCTAGATCTAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCCTCTTCCCTCTTTCTAGATCCAGGCAGATCTAGATCTAGAGA  100

seq1  CAGGCAGATCTAGATCCAGTTTGTTTACTTTGCTGTTTTCCCAAAGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATCTAGATCCAGTTTGTTTACTTTGCTGTTTTCCCAAAGCAAT  150

seq1  TAAATATATCGATGGAGGACTTATCAGTGCTTCACAAATCATTTATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATCGATGGAGGACTTATCAGTGCTTCACAAATCATTTATTTTG  200

seq1  TTGTCATTGTTTACATATTGGCCTTCTCTATCCAACTTTGTCATTTTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTGTTTACATATTGGCCTTCTCTATCCAACTTTGTCATTTTTCG  250

seq1  GCTTCAGCATCTAGTACAATACCTGGCAGAGATGCTCTAAAGTTACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGCATCTAGTACAATACCTGGCAGAGATGCTCTAAAGTTACAAAA  300

seq1  TAGAAGAGAGAGGAAAAAATAGAAAAAAAGAGAGAGAGAGAGAGAGAGAG  350
      ||||||||||||||||||||||||||||    ||||||||||||||||||
seq2  TAGAAGAGAGAGGAAAAAATAGAAAAAA----AGAGAGAGAGAGAGAGAG  346

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGGAAGGAAGGAAGGAAGGAAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGGAAGGAAGGAAGGAAGGAAGGAAG  396

seq1  GAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATAAAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATAAAGAAAGAA  446

seq1  AGAAGACTGTACCATGTGGAAAAGAAGAGCAAGAAGAGATCTATAGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTGTACCATGTGGAAAAGAAGAGCAAGAAGAGATCTATAGGGAC  496

seq1  CAGGCTGGGAAGGCAACATCATCCCTACCCCTACCCTGTATAGACTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGGAAGGCAACATCATCCCTACCCCTACCCTGTATAGACTCTCC  546

seq1  AATCCTGCCTCCAGTCCCTCTGCAGGCACCATGTCTTCCATCATTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCCTCCAGTCCCTCTGCAGGCACCATGTCTTCCATCATTTTCTT  596

seq1  CCTGTTTTGTCAGTTCTAGTTGCTCTCAACTGCTGCAGACTGACATTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTGTCAGTTCTAGTTGCTCTCAACTGCTGCAGACTGACATTGAC  646

seq1  CCCTTGTGACAAGCAGATCAACTCCTAATCTGCTAGAGCTCCAGTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTGACAAGCAGATCAACTCCTAATCTGCTAGAGCTCCAGTTTTTC  696

seq1  TGGGATGTTGGCAAGCTCTTGACAGGTCCAGAGGAGAGGAAAGCTGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGTTGGCAAGCTCTTGACAGGTCCAGAGGAGAGGAAAGCTGTCAG  746

seq1  CTCTCACTCTTCAGCACTCTGAACAGCTGAACAGCC-AGTCCAAGGCTCA  799
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  CTCTCACTCTTCAGCACTCTGAACAGCTGAACAGCCAATTCCAAGGCTCA  796

seq1  ATTTGCACCTTTTGGTCCCCC-GGGGCTGCTATGAC-TTTGATTGCTGCT  847
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  ATTTGCACCTTTTGGTCCCCCGGGGGCTGCTATGACTTTTGATTGCTGCT  846

seq1  TTAGGGCTCTTCAGTAGTTTCTC-TTAAGGGATAAGTAGGAT-GGAGTGG  895
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  TTAGGGCTCTTCAGTAGTTTCTCTTTAAGGGATAAGTAGGATGGGAGTGG  896

seq1  TTGA-GAACAACAATATTAG-CCCTATT-CTTGCATC  929
       ||| |||||||| |||||| ||||||| ||||||||
seq2  GTGAGGAACAACATTATTAGCCCCTATTCCTTGCATC  933

seq1: chr1_195576825_195577904
seq2: B6Ng01-090A12.g_67_1148 (reverse)

seq1  GTCATTCTTAGGACACAGTTCCTCATCTGTCATTTTTTTGAAGCTTCTAA  50
      ||||||||  ||||||||||| ||||| |||  ||||||||||||| | |
seq2  GTCATTCTAGGGACACAGTTCATCATC-GTCCATTTTTTGAAGCTT-TTA  48

seq1  GCTGCTGTCAGTGGCAGTAGGAGTGGTCATGGAGGCTTAGCTCCATGCTG  100
      | ||||||| |||||||||| ||||||||| |||||||||||||||||||
seq2  GATGCTGTCTGTGGCAGTAGAAGTGGTCAT-GAGGCTTAGCTCCATGCTG  97

seq1  GCTGCT-ATATCTAATGTGTGAGAAGTTCTAGCTCTCTCAGGCAAAG-CT  148
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTGCTAATATCTAATGTGTGAGAAGTTCTAGCTCTCTCAGGCAAAGCCT  147

seq1  GGATTCTTGAATCACTGCAGAAGACAATTCCAGGATGAGACAGTATAAAA  198
      ||| |||||| |||||||||||||||||| |||||||||  |||||||||
seq2  GGAATCTTGATTCACTGCAGAAGACAATTTCAGGATGAGGAAGTATAAAA  197

seq1  TAGGTTTTAAGGTTGTGATGAAGAGACTTTTACATGGATTT-ATCCATCG  247
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  TAGGTTTTAAGGTTGTGATGAAGAGACTTTTACAGGGATTTAATCCATCG  247

seq1  GCATTAATAGCAGGAGGTACCTAGC-AAAAGACAGTACCTACCCAAGTGT  296
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCATTAATAGCAGGAGGTACCTAGCAAAAAGACAGTACCTACCCAAGTGT  297

seq1  GGGTGTGGGCTTCTCAAAAGAGAGACACGCTGAAAAGTCGTAGCCATTGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGGCTTCTCAAAAGAGAGACACGCTGAAAAGTCGTAGCCATTGC  347

seq1  CATCTGTGCTGATTAATCCTTCTGTTAACTCGACAGAAGCTAGAATCACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGCTGATTAATCCTTCTGTTAACTCGACAGAAGCTAGAATCACC  397

seq1  TGAAAGTGGGGCCTCCTAATGATCTATATGGAGAGAGTCCAACCCACTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGGGGCCTCCTAATGATCTATATGGAGAGAGTCCAACCCACTGT  447

seq1  GGGTGGTGCCATTCCTGAGGTAGCAATGAGTTGTGTAAG-AAAGGCTGAG  495
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGTGGTGCCATTCCTGAGGTAGCAATGAGTTGTGTAAGAAAAGGCTGAG  497

seq1  TATGTCCTGGGAAGCAGGCCAGAAAGTAGCATTTCTCTATGGTTTCTGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCTGGGAAGCAGGCCAGAAAGTAGCATTTCTCTATGGTTTCTGCT  547

seq1  TCAGTTCCTGCCTCCAGCTTCCTGCTCTGACGTCTCTTTACTACAGACTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCTGCCTCCAGCTTCCTGCTCTGACGTCTCTTTACTACAGACTG  597

seq1  TAGTCTGCAAAGTGGAAAATGAACCCATGCTTGCCTGCCCCAGTTGGTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGCAAAGTGGAAAATGAACCCATGCTTGCCTGCCCCAGTTGGTTT  647

seq1  TGATCAGGGTTCTATCACAGCAACAGAAAGCAAACCAGGACACCATGTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGGGTTCTATCACAGCAACAGAAAGCAAACCAGGACACCATGTTT  697

seq1  GGATTTTGTGGCTTCTGAAGTTACTTTGCTCAAAGGGTTTCTAAAGAATC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGTGGCTTCTGAAGTTACTTTGCTCAAAGGGTTTCTAAAGAATC  747

seq1  TCCTTATACCCCCATTTTTATTTGGTAAAACCATAGAATACAAGGACTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATACCCCCATTTTTATTTGGTAAAACCATAGAATACAAGGACTCA  797

seq1  CAAGTAAGCTAAGGCTTCTTTAAAACTGTAAGTGAAGAGCATAGTCTTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAGCTAAGGCTTCTTTAAAACTGTAAGTGAAGAGCATAGTCTTAT  847

seq1  TTGTGAGATTCTCAGAAAACTGCATGTTTAGAGCTGGAAAAGAAGATAGG  895
      ||||||||||||||||||||||||||| || |  |  |||   | |||  
seq2  TTGTGAGATTCTCAGAAAACTGCATGTATATATATATAAATATATATATA  897

seq1  CCATGCTTGAAAGGCATATATATATATATATATATATATATATATATATA  945
            |  | |   |||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  947

seq1  TATATATATATATATACATAAATATATATATATATCCTCAGCATACTCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATACATAAATATATATATATATCCTCAGCATACTCAA  997

seq1  TTCCATGCTAGTTTATCACTCATTCTCAAGACATTTCTCTATGCAGACAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGCTAGTTTATCACTCATTCTCAAGACATTTCTCTATGCAGACAG  1047

seq1  CCTCAAAGCAAATTTTAGCAATTGTGTTGGAATTC  1080
      |||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGCAAATTTTAGCAATTGTGTTGGAATTC  1082