BAC Information

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BAC

Clone NameB6Ng01-090D13
Chromosome1 (Build37)
Map Location 92,820,386 - 92,899,772
singlet/doubletdoublet
Overlap geneMlph, Prlh, Rab17
Upstream geneGbx2, Asb18, Iqca, Cxcr7, Cops8, Col6a3
Downstream geneLrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090D13.bB6Ng01-090D13.g
ACCDH902582DH902583
length1,0461,171
definitionDH902582|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D13, 5' end.DH902583|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,820,386 - 92,821,430)(92,898,604 - 92,899,772)
sequence
gaattcctgagataatccatgaaagacttgtcatcatgagacacagacag
acaaatgggcatatttaaaaatcagcagcagaagggggctggagagatgg
ctcagcgattaaaagcactgactgctcttccagaggtcctgagttcaatt
cccagtacccacatggtggcttacaaccatcgctaacggggatctaatac
cctcttctggtgtgtctgtctgaagacagcgacagtgtactcacatacat
gaaataaataatttttttttaatcagcagaagggacaggagaggtggctc
agtggttaagagcacttgttgctcttccagaggaactgggtttgattccc
aggacccacatgatggttcacgaccatctgtagccccagttccaggggca
ccaatgccttcttctggccttcatgggtaccagacatatacacatggtgc
acagacggccactgagataaaaagcagacatactcttgaaataaaattaa
aattaaaactcaggagaaaactaagaaaaattaagtctggtccatcatcc
ctatgaacaatgggagccagggcagcaaagagcaatggctaacagaggaa
gtcatctgtctgccagggtggagattagcattggtgtgagatgccaacgg
gattctgctttgcctctgtctcctgcattcacacattcccaccccccacc
ccccccactacattctccccagcagtttcttttccaccttgactactcct
ttcccagaatcttcaggaaggctgccacacccatttcctcacatccctga
caaggtttctttacctcctaccttcaagtctccgcctccaccccttactc
tttcctttctgttgcctcctacagcaggctctgagggtcacatttccttt
cgagtaactcattactagtatctggtctagccatggattccctctttagt
catggagttcagctgcccgtgcagcaaaaccttggctgactctggagcac
agctttgcgtgctgactctctgaacactcctccagcagattcactc
gaattcttcccagatccctcaatccaagaaagccacgtcaccttggtgcc
aaaggtagcagaggtaagggtctaaaatgagctagacccatgaacacacc
ccaacctattgatatcccaatggccttgaagcttgagcaagcagatgtat
agacaggctcaccttacacaggtagagtcctgaggtctgcttgggaggat
gagcagagcacgtggatggactatctcagtaggattgcccagcccaggag
tggtgctcacagcaggtctcctaggagacaagcctgcagcctgcacatgg
ctgctagtggtttcctgcaggagccctagaggcaagcaggacggagcatg
ggctcagcagcggaacatagaaggtaccatcagcctgtgagtctaggaca
ggaagtctccagggtgggagagtgacattctctgttctaacatgtgtgag
ctaatggctgcaggttgcctttcccaggagctctgctggggagaagggtg
ggggtatcttctatgtatcaggaactttggtccagagaaggtgaagctgg
gggtgggctctgagttttcaacattcagggctcctggaccacatgctagg
aggatcccctcacagtgggttccctggacaagaggcttcagagacagtta
tggccattcttaataccttacagatgatgaccagatctgtgtctctctta
gaagaaccacccagatccccctccccttcctgtcttgtcctgctgaatgt
ggaaaggcatctcgtgtaggccacagagggaggaaccaactcaccaccca
agatgatgggcaaacccaaatgaagccagctgctgcgactgtggcattgg
aaagccttggagaggacactgaacaactcttggacagagcgctgaggggg
aagctaagcctcccctaaagtccctggcagaagtccacatggggaggaag
gagacttcagcctggagattcacccttatgaagaacttcagcacacctct
gccccatatgttgagacttggcactcccagcctctagaagtcatgcctta
ctgtctgagactgatggcagccccttccccacatcatgtcagaatttcac
cctcctaggatgatccagttcagtactgtatattgcccaaggccatatta
aattgactacccatcatttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92820386_92821430
seq2: B6Ng01-090D13.b_43_1083

seq1  GAATTCCTGAGATAATCCATGAAAGACTTGTCATCATGAGACACAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGATAATCCATGAAAGACTTGTCATCATGAGACACAGACAG  50

seq1  ACAAATGGGCATATTTAAAAATCAGCAGCAGAAGGGGGCTGGAGAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGGCATATTTAAAAATCAGCAGCAGAAGGGGGCTGGAGAGATGG  100

seq1  CTCAGCGATTAAAAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGATTAAAAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATT  150

seq1  CCCAGTACCCACATGGTGGCTTACAACCATCGCTAACGGGGATCTAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACCCACATGGTGGCTTACAACCATCGCTAACGGGGATCTAATAC  200

seq1  CCTCTTCTGGTGTGTCTGTCTGAAGACAGCGACAGTGTACTCACATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGGTGTGTCTGTCTGAAGACAGCGACAGTGTACTCACATACAT  250

seq1  GAAATAAATAATTTTTTTTTAATCAGCAGAAGGGACAGGAGAGGTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATAATTTTTTTTTAATCAGCAGAAGGGACAGGAGAGGTGGCTC  300

seq1  AGTGGTTAAGAGCACTTGTTGCTCTTCCAGAGGAACTGGGTTTGATTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAAGAGCACTTGTTGCTCTTCCAGAGGAACTGGGTTTGATTCCC  350

seq1  AGGACCCACATGATGGTTCACGACCATCTGTAGCCCCAGTTCCAGGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCACATGATGGTTCACGACCATCTGTAGCCCCAGTTCCAGGGGCA  400

seq1  CCAATGCCTTCTTCTGGCCTTCATGGGTACCAGACATATACACATGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCCTTCTTCTGGCCTTCATGGGTACCAGACATATACACATGGTGC  450

seq1  ACAGACGGCCACTGAGATAAAAAGCAGACATACTCTTGAAATAAAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGGCCACTGAGATAAAAAGCAGACATACTCTTGAAATAAAATTAA  500

seq1  AATTAAAACTCAGGAGAAAACTAAGAAAAATTAAGTCTGGTCCATCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACTCAGGAGAAAACTAAGAAAAATTAAGTCTGGTCCATCATCC  550

seq1  CTATGAACAATGGGAGCCAGGGCAGCAAAGAGCAATGGCTAACAGAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACAATGGGAGCCAGGGCAGCAAAGAGCAATGGCTAACAGAGGAA  600

seq1  GTCATCTGTCTGCCAGGGTGGAGATTAGCATTGGTGTGAGATGCCAACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTGTCTGCCAGGGTGGAGATTAGCATTGGTGTGAGATGCCAACGG  650

seq1  GATTCTGCTTTGCCTCTGTCTCCTGCATTCACACATTCCCACCCCCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGCTTTGCCTCTGTCTCCTGCATTCACACATTCCCACCCCCCACC  700

seq1  CCCCCCACTACATTCTCCCCAGCAGTTTCTTTTCCACCTTGACTACTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACTACATTCTCCCCAGCAGTTTCTTTTCCACCTTGACTACTCCT  750

seq1  TTCCCAGAATCTTCAGGAAGGCTGCCACACCCATTTCCTCACATCCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAATCTTCAGGAAGGCTGCCACACCCATTTCCTCACATCCCTGA  800

seq1  CAAGGTTTCTTTACCTCCTACCTTCAAGTCTCCGCCTCCACCCCTTACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTCTTTACCTCCTACCTTCAAGTCTCCGCCTCCACCCCTTACTC  850

seq1  TTTCCTTTCTGTTGCCTCCTACAGCAGGCTCTGAGGGTCACAATTCC-TT  899
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  TTTCCTTTCTGTTGCCTCCTACAGCAGGCTCTGAGGGTCACATTTCCTTT  900

seq1  CGAGTAACTCATTACTAGTATCTGGTCTAGCCATGGATTCCCTCTTTAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTAACTCATTACTAGTATCTGGTCTAGCCATGGATTCCCTCTTTAGT  950

seq1  CATGGAGTTCAGCTGCCCGTGCAAGGCAAAACCTTGGCTGACTCTGGAGC  999
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  CATGGAGTTCAGCTGCCCGTGCA--GCAAAACCTTGGCTGACTCTGGAGC  998

seq1  ACAGCCTTTGCGTGCTGACTCTCTGGAAACACTCCCCCAGCAGATT  1045
      |||| ||||||||||||||||||||  |||||||| ||||||||||
seq2  ACAG-CTTTGCGTGCTGACTCTCTG--AACACTCCTCCAGCAGATT  1041

seq1: chr1_92898604_92899772
seq2: B6Ng01-090D13.g_67_1237 (reverse)

seq1  GCAAATAGATGGGTTGTC-ATTTAATAT-GCCTTTGGC-ATAT-CAGTAC  46
      |||||| ||||||| ||| ||||||||| ||||| ||| |||| ||||||
seq2  GCAAAT-GATGGGTAGTCAATTTAATATGGCCTTGGGCAATATACAGTAC  49

seq1  TG-ACTGGATCATCTTTAGGA-GGTGAAATTCTAGCATGATGTTGGGGGA  94
      || |||||||||||  ||||| |||||||||||  ||||||||  |||||
seq2  TGAACTGGATCATC-CTAGGAGGGTGAAATTCTGACATGATGT--GGGGA  96

seq1  AGGGGCCTGCCATCAGTCTCCAGACAGTAAGGCATGGCCTTCTAGGAGGC  144
      ||||| ||||||||||||| ||||||||||||||| | |||||| |||||
seq2  AGGGG-CTGCCATCAGTCT-CAGACAGTAAGGCAT-GACTTCTA-GAGGC  142

seq1  TGGGAGTGCCAGGTCTC-ACATAT-GGGCAGAGGTGTTGCTGAAG-TCTT  191
      ||||||||||| ||||| |||||| ||||||||||| |||||||| ||||
seq2  TGGGAGTGCCAAGTCTCAACATATGGGGCAGAGGTG-TGCTGAAGTTCTT  191

seq1  CATAA-GGTGAATCTCCAGGCTG-AGTCTTCCTTCCT-CCCATGTGGACC  238
      ||||| ||||||||||||||||| |||| |||||||| |||||||||| |
seq2  CATAAGGGTGAATCTCCAGGCTGAAGTC-TCCTTCCTCCCCATGTGGA-C  239

seq1  TTCTGCCAGGGACTTTAGGGGGGCCTGGGCTTCCCCCTCAGCGCTCTGTC  288
      ||||||||||||||||||||| | ||  ||||||||||||||||||||||
seq2  TTCTGCCAGGGACTTTAGGGGAGGCTTAGCTTCCCCCTCAGCGCTCTGTC  289

seq1  CAAG-GTTGTTCAGTGTCCTCTCCAAGGCTTTCCAATGCCACAGTCGCAG  337
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTGTTCAGTGTCCTCTCCAAGGCTTTCCAATGCCACAGTCGCAG  339

seq1  CAGCTGGCTTCATTTGGGTTTGCCCATCATCTTGGGTGGTGAGTTGGTTC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCTTCATTTGGGTTTGCCCATCATCTTGGGTGGTGAGTTGGTTC  389

seq1  CTCCCTCTGTGGCCTACACGAGATGCCTTTCCACATTCAGCAGGACAAGA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTGTGGCCTACACGAGATGCCTTTCCACATTCAGCAGGACAAGA  439

seq1  CAGGAAGGGGAGGGGGATCTGGGTGGTTCTTCTAAGAGAGACACAGATCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGGGAGGGGGATCTGGGTGGTTCTTCTAAGAGAGACACAGATCT  489

seq1  GGTCATCATCTGTAAGGTATTAAGAATGGCCATAACTGTCTCTGAAGCCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCATCTGTAAGGTATTAAGAATGGCCATAACTGTCTCTGAAGCCT  539

seq1  CTTGTCCAGGGAACCCACTGTGAGGGGATCCTCCTAGCATGTGGTCCAGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCAGGGAACCCACTGTGAGGGGATCCTCCTAGCATGTGGTCCAGG  589

seq1  AGCCCTGAATGTTGAAAACTCAGAGCCCACCCCCAGCTTCACCTTCTCTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAATGTTGAAAACTCAGAGCCCACCCCCAGCTTCACCTTCTCTG  639

seq1  GACCAAAGTTCCTGATACATAGAAGATACCCCCACCCTTCTCCCCAGCAG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGTTCCTGATACATAGAAGATACCCCCACCCTTCTCCCCAGCAG  689

seq1  AGCTCCTGGGAAAGGCAACCTGCAGCCATTAGCTCACACATGTTAGAACA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGGGAAAGGCAACCTGCAGCCATTAGCTCACACATGTTAGAACA  739

seq1  GAGAATGTCACTCTCCCACCCTGGAGACTTCCTGTCCTAGACTCACAGGC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTCACTCTCCCACCCTGGAGACTTCCTGTCCTAGACTCACAGGC  789

seq1  TGATGGTACCTTCTATGTTCCGCTGCTGAGCCCATGCTCCGTCCTGCTTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTACCTTCTATGTTCCGCTGCTGAGCCCATGCTCCGTCCTGCTTG  839

seq1  CCTCTAGGGCTCCTGCAGGAAACCACTAGCAGCCATGTGCAGGCTGCAGG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGGGCTCCTGCAGGAAACCACTAGCAGCCATGTGCAGGCTGCAGG  889

seq1  CTTGTCTCCTAGGAGACCTGCTGTGAGCACCACTCCTGGGCTGGGCAATC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCCTAGGAGACCTGCTGTGAGCACCACTCCTGGGCTGGGCAATC  939

seq1  CTACTGAGATAGTCCATCCACGTGCTCTGCTCATCCTCCCAAGCAGACCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAGATAGTCCATCCACGTGCTCTGCTCATCCTCCCAAGCAGACCT  989

seq1  CAGGACTCTACCTGTGTAAGGTGAGCCTGTCTATACATCTGCTTGCTCAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCTACCTGTGTAAGGTGAGCCTGTCTATACATCTGCTTGCTCAA  1039

seq1  GCTTCAAGGCCATTGGGATATCAATAGGTTGGGGTGTGTTCATGGGTCTA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAGGCCATTGGGATATCAATAGGTTGGGGTGTGTTCATGGGTCTA  1089

seq1  GCTCATTTTAGACCCTTACCTCTGCTACCTTTGGCACCAAGGTGACGTGG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTTAGACCCTTACCTCTGCTACCTTTGGCACCAAGGTGACGTGG  1139

seq1  CTTTCTTGGATTGAGGGATCTGGGAAGAATTC  1169
      ||||||||||||||||||||||||||||||||
seq2  CTTTCTTGGATTGAGGGATCTGGGAAGAATTC  1171