BAC Information

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BAC

Clone NameB6Ng01-090G03
Chromosome1 (Build37)
Map Location 41,951,090 - 41,952,224
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3, Mrps9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090G03.bB6Ng01-090G03.g
ACCDH902696DH902697
length1,2531,124
definitionDH902696|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G03, 5' end.DH902697|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgtataaaaaccacaaaataatcaaataaacagagaattggt
attttcagaaggctagcgagatatgtaaacttagccaaactgagaaaaag
taagtgtgataatcagaatcaacacaattagaagtgacatgagagacatt
acaaaagataccaaggaaataagagaatgatcaagaaagtaactttaaaa
atccccatgctaccaaaatgaaaaacataaaagaaacggatgaatttata
gttttacaacctaccagagtgagatatagatgaactgaataataaaaatg
gactccattttaacctatggtatagaagctgtgattaaaaatgtcccaat
taaaataaataccagggctaaatacatttaatgcagaattctcccagacc
tttgaagaagagctaccacttaaagtccttaaattaatcctcagaatgtc
tctcagagagggacatttctaaaattcactttatgaagccaatatttccc
tgatatcaaaaccaatcaaaagttcatcaaagtgtaaaatgatagggaaa
tatatctagtggacataagtgaaatctcaataaagtacttgaaaacaatt
tcaagaacaagtaaaaatttggtccatcttggtcaagcagcttaatgcca
gagcttcggtgatagttcagtatatgcaaatcaataaacatagtcaccat
attaatagatggaagaacaaaaagtataaaatcattttactagatacctt
tgacattattttagataactttgacatttcattaggtacctttgacaatt
cattagattcctttgacaatcatttcattagataccttcattaaagacct
ttgacaaaattcaacatccatccataataaaagtgctagagaaaacagga
atagaatgaatatatctcaacacaataaggtaatataaagaaagaccaag
acttgcatcaccttaaatggagaaaactcaaaacgtttccaccaaaatga
gaaacaggctagatgtcatttccccttcttgttgatagttgcatctagag
gtaggcaagaagagatgaaaggatacactagaaagatgcagtcagcatct
tattgaagatgatataactctttaaagacccacggacaaccttattcgga
tgcatccccccaccacagaaggattcagaattcggaaatctactcactac
tcaatacttgggaaagagttataaaaagttaaggaatatcctcagtgaaa
act
gaattccacatgtacatacataaggagtgtccctctcagtgagggctgct
acaggcagaggttactctcacctatttcatttagcaatgttaagcatcaa
caatgaaagggcgaattgaagacttctgaactttcctggcttagatttct
gtaagatcatgtgattgacgggccaaactttcatctgttcaatattgtat
tatttaagaactgctaccatggtgtcactccctgctccatcaattcccaa
acaagagacaatttataaaacaagcaatgagagtcaagtgcctgtctcct
tttctttttaggcaatgctctatctcagtcaaaaccagagtggcttcctt
tctcagtgattactatggtaagacctggacttcagtgggcatgtttatca
gcttctttaagggcaaacctacatgagagtttcacatctcctgtatttga
ggcaacacttactgagagtcctgttacatgcataaaatgaaaagagcagg
cagacctgagtctgtgcagagcacccgatgttctggcatgttttgccatg
taagacacagaagcagatcttgttgggcaagcatagcttccaaaggagaa
atgattcagccctaaatactttgaaagaagccttctctacaggaagatta
gtttaagggctggaaaaaatgttttctgattcaatgattagtaaagggag
aacatatttgaaagtctatttttcatttaacactattaaacggtccagct
tcatgcatctcatgtttaatttgaaagcttccggtatttgagatgtgatg
gcccaaggattgacacctactgccaacctttggacatgcctacatttcag
gacaagaggaaattatagcccatcactttagtgagcagaaagagcccatt
agttgaggagaaaagaaaagatcaaatttagttgaattactttcttgggg
taaatattgtgcccaaaccatcatatttgaccatttcctcaacaacagag
tgtcttgagatgaagcctctgtagaccctgtgctcatctgtcatttctga
tgctcatgagacccaagtggcatgtaccagaaacactatatggtcactgg
tcctcaaagaatctctagctactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41951090_41952224
seq2: B6Ng01-090G03.g_69_1192

seq1  GAATTCCACATGTACATACATAAGGAGTGTCCCTCTCAGTGAGGGCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATGTACATACATAAGGAGTGTCCCTCTCAGTGAGGGCTGCT  50

seq1  ACAGGCAGAGGTTACTCTCACCTATTTCATTTAGCAATGTTAAGCATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGAGGTTACTCTCACCTATTTCATTTAGCAATGTTAAGCATCAA  100

seq1  CAATGAAAGGGCGAATTGAAGACTTCTGAACTTTCCTGGCTTAGATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAGGGCGAATTGAAGACTTCTGAACTTTCCTGGCTTAGATTTCT  150

seq1  GTAAGATCATGTGATTGACGGGCCAAACTTTCATCTGTTCAATATTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATCATGTGATTGACGGGCCAAACTTTCATCTGTTCAATATTGTAT  200

seq1  TATTTAAGAACTGCTACCATGGTGTCACTCCCTGCTCCATCAATTCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGAACTGCTACCATGGTGTCACTCCCTGCTCCATCAATTCCCAA  250

seq1  ACAAGAGACAATTTATAAAACAAGCAATGAGAGTCAAGTGCCTGTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGACAATTTATAAAACAAGCAATGAGAGTCAAGTGCCTGTCTCCT  300

seq1  TTTCTTTTTAGGCAATGCTCTATCTCAGTCAAAACCAGAGTGGCTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTAGGCAATGCTCTATCTCAGTCAAAACCAGAGTGGCTTCCTT  350

seq1  TCTCAGTGATTACTATGGTAAGACCTGGACTTCAGTGGGCATGTTTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGATTACTATGGTAAGACCTGGACTTCAGTGGGCATGTTTATCA  400

seq1  GCTTCTTTAAGGGCAAACCTACATGAGAGTTTCACATCTCCTGTATTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTAAGGGCAAACCTACATGAGAGTTTCACATCTCCTGTATTTGA  450

seq1  GGCAACACTTACTGAGAGTCCTGTTACATGCATAAAATGAAAAGAGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACACTTACTGAGAGTCCTGTTACATGCATAAAATGAAAAGAGCAGG  500

seq1  CAGACCTGAGTCTGTGCAGAGCACCCGATGTTCTGGCATGTTTTGCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGAGTCTGTGCAGAGCACCCGATGTTCTGGCATGTTTTGCCATG  550

seq1  TAAGACACAGAAGCAGATCTTGTTGGGCAAGCATAGCTTCCAAAGGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACAGAAGCAGATCTTGTTGGGCAAGCATAGCTTCCAAAGGAGAA  600

seq1  ATGATTCAGCCCTAAATACTTTGAAAGAAGCCTTCTCTACAGGAAGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCAGCCCTAAATACTTTGAAAGAAGCCTTCTCTACAGGAAGATTA  650

seq1  GTTTAAGGGCTGGAAAAAATGTTTTCTGATTCAATGATTAGTAAAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGGGCTGGAAAAAATGTTTTCTGATTCAATGATTAGTAAAGGGAG  700

seq1  AACATATTTGAAAGTCTATTTTTCATTTAACACTATTAAACGGTCCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTTGAAAGTCTATTTTTCATTTAACACTATTAAACGGTCCAGCT  750

seq1  TCATGCATCTCATGTTTAATTTGAAAGCTTCCGGTATTTGAGATGTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATCTCATGTTTAATTTGAAAGCTTCCGGTATTTGAGATGTGATG  800

seq1  GCCCAAGGATTGACACCTACTGCCAACCTTTGGACATGCCTACATTTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGGATTGACACCTACTGCCAACCTTTGGACATGCCTACATTTCAG  850

seq1  GACAAGAGGAAA-TATAGCCCATCACTTTAGTGAGCAGGAAAGAGCCCAT  899
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  GACAAGAGGAAATTATAGCCCATCACTTTAGTGAGCA-GAAAGAGCCCAT  899

seq1  TAGTTGAGGAGAAAAGAAAAAGATCAAATTTAGTTGAATTACTTTCTTGG  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGTTGAGGAGAAAAG-AAAAGATCAAATTTAGTTGAATTACTTTCTTGG  948

seq1  GGTAAAATATTGTGCCCAAACCATCATATTTGACCATTTCCTCAACAACA  999
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGT-AAATATTGTGCCCAAACCATCATATTTGACCATTTCCTCAACAACA  997

seq1  GAGTGTCCTGAAGAAGGAAGCCTCTGTAGACCCTGTGCTCAATTCTGTCA  1049
      ||||||| |||   | |||||||||||||||||||||||||  |||||||
seq2  GAGTGTCTTGA--GATGAAGCCTCTGTAGACCCTGTGCTCA--TCTGTCA  1043

seq1  TTTCTGATGCTCATGAGACCCCAGGTGGCATGTACACAGGAAACACTATA  1099
      |||||||||||||||||| |||| ||||||||||| || |||||||||||
seq2  TTTCTGATGCTCATGAGA-CCCAAGTGGCATGTAC-CA-GAAACACTATA  1090

seq1  GGGTTCACTGGTCCTCAGAGAGATCTCTAGCTACTC  1135
       || ||||||||||||| ||| ||||||||||||||
seq2  TGG-TCACTGGTCCTCAAAGA-ATCTCTAGCTACTC  1124