BAC Information

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BAC

Clone NameB6Ng01-090I02
Chromosome1 (Build37)
Map Location 195,843,622 - 195,970,351
singlet/doubletdoublet
Overlap genenone
Upstream geneSyt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090I02.bB6Ng01-090I02.g
ACCDH902787DH902788
length1,132768
definitionDH902787|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I02, 5' end.DH902788|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(195,843,622 - 195,844,805)(195,969,558 - 195,970,351)
sequence
gaattcccctacactggggcatagagtcttcccaggaccaaggtcctttc
ctcccattgatgtccgacaaggccatcctttgcaacatatgtggctgggg
ccatgggtcgctccatgtgttctctttggttggtggtttagtccctggga
gctccagggaggtctggttggttgatattgttgttcttcctatggggttg
caaacctcttcatctccttcagtcctttctctaattcctcctttgagaac
ccctggcttagttcaatggttggctgcaagcatctgcctctgtgtatttg
taaggctctggcagagcatctcaggaaacagctaagtcaggctcctttca
gcaagcatttcttagcatcgtagtttggtgtctgtatttgggatggatcc
tcaggtggggcagtctctggatggcctttccttcagtctctgctccacac
tatgaagctggatgacttactcttcatttagaacccactggaaccttcag
aactcaatggtggaagacgcaggatttacctggttctgaccacataatct
tataattttttacctcattgtccaattgggctttgtctcttttgatattc
atattttttactagcttatctgctaagcaatttcttgcaattctacctcc
tggatcttccctaattaccttatttaaaactctgatttacccactccatt
ccttctcactcctgtctgagcctcattttgcttcatgattttgtttttag
tttttgtcctgttttactgtagcacctatcatcaacatatgatataatgt
ttgtagatggaattcatttatatttttctactatttttttctttttgtgc
tagaatgtaagttttatttattttaaaaaaaaatgttgggttttaggagc
taattctccttcccaaagaagaaggtatcagtaccttaaagactgcacta
cttatttcttctatatttttccttcctatttattttcctcggatattcca
ccatttgtttctgctttctatgtgctacaaattccatcattctctatgat
gtcgattgattaggtgcattcactgggtctcaggtgtcaaccatgtccag
aactcttccgtgcatctttccctctctctttc
gaattctttgctctggggagatagatcaataagtaaagtgcttacttcac
aaatacaaggacctgagtttgattctcagaagccatgttataaaaagcca
gacctaatatcatatacctgtaatctcagcactgggaatgtgggtcaacc
agatctcttaggtacctaagattatcccctctggcttctgcatgtgtata
cacacacacacactcacactcacacacacacacacacacacacacagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagaggcttaggtttaattctgatttcaccaaacatttgtctgtgacctt
aagaaacccaattttaaagaagctcaacttcttccactgtggaagatgag
tgctacagagggttatggtgaaaaatatccaatgagagctgtctggtaga
acatcagccctgccatagtagttgctcaatgaaccacatctgggtctgat
gttctagagctcaattactctcttagtctaccacctggctgcttcccaag
cctcctgtctccatgttgaatcagaggccttctctgactagttctaattc
tggtgagcttgactcacactgtcctctgtgtgtacctcatctgatcgctt
gcttctgagtcactcatctatgctgtgttaggtacatactacacacacac
tatgctcaccaatggcacaaccttaccatcagcttatcagtcaccacagc
ctctctagagtcagatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195843622_195844805
seq2: B6Ng01-090I02.b_44_1175

seq1  GAATTCCCCTACACTGGGGCATAGAGTCTTCCCAGGACCAAGGTCCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTACACTGGGGCATAGAGTCTTCCCAGGACCAAGGTCCTTTC  50

seq1  CTCCCATTGATGTCCGACAAGGCCATCCTTTGCAACATATGTGGCTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTGATGTCCGACAAGGCCATCCTTTGCAACATATGTGGCTGGGG  100

seq1  CCATGGGTCGCTCCATGTGTTCTCTTTGGTTGGTGGTTTAGTCCCTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTCGCTCCATGTGTTCTCTTTGGTTGGTGGTTTAGTCCCTGGGA  150

seq1  GCTCCAGGGAGGTCTGGTTGGTTGATATTGTTGTTCTTCCTATGGGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGGAGGTCTGGTTGGTTGATATTGTTGTTCTTCCTATGGGGTTG  200

seq1  CAAACCTCTTCATCTCCTTCAGTCCTTTCTCTAATTCCTCCTTTGAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTCTTCATCTCCTTCAGTCCTTTCTCTAATTCCTCCTTTGAGAAC  250

seq1  CCCTGGCTTAGTTCAATGGTTGGCTGCAAGCATCTGCCTCTGTGTATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTTAGTTCAATGGTTGGCTGCAAGCATCTGCCTCTGTGTATTTG  300

seq1  TAAGGCTCTGGCAGAGCATCTCAGGAAACAGCTAAGTCAGGCTCCTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTCTGGCAGAGCATCTCAGGAAACAGCTAAGTCAGGCTCCTTTCA  350

seq1  GCAAGCATTTCTTAGCATCGTAGTTTGGTGTCTGTATTTGGGATGGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATTTCTTAGCATCGTAGTTTGGTGTCTGTATTTGGGATGGATCC  400

seq1  TCAGGTGGGGCAGTCTCTGGATGGCCTTTCCTTCAGTCTCTGCTCCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGGGCAGTCTCTGGATGGCCTTTCCTTCAGTCTCTGCTCCACAC  450

seq1  TATGAAGCTGGATGACTTACTCTTCATTTAGAACCCACTGGAACCTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCTGGATGACTTACTCTTCATTTAGAACCCACTGGAACCTTCAG  500

seq1  AACTCAATGGTGGAAGACGCAGGATTTACCTGGTTCTGACCACATAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAATGGTGGAAGACGCAGGATTTACCTGGTTCTGACCACATAATCT  550

seq1  TATAATTTTTTACCTCATTGTCCAATTGGGCTTTGTCTCTTTTGATATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTTTACCTCATTGTCCAATTGGGCTTTGTCTCTTTTGATATTC  600

seq1  ATATTTTTTACTAGCTTATCTGCTAAGCAATTTCTTGCAATTCTACCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTACTAGCTTATCTGCTAAGCAATTTCTTGCAATTCTACCTCC  650

seq1  TGGATCTTCCCTAATTACCTTATTTAAAACTCTGATTTACCCACTCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTCCCTAATTACCTTATTTAAAACTCTGATTTACCCACTCCATT  700

seq1  CCTTCTCACTCCTGTCTGAGCCTCATTTTGCTTCATGATTTTGTTTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCACTCCTGTCTGAGCCTCATTTTGCTTCATGATTTTGTTTTTAG  750

seq1  TTTTTGTCCTGTTTTACTGTAGCACCTATCATCAACATATGATATAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCCTGTTTTACTGTAGCACCTATCATCAACATATGATATAATGT  800

seq1  TTGTAGATGGAATTCATTTATATTTTACTACTA-TTTTTTCTTTTTGTGC  849
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  TTGTAGATGGAATTCATTTATATTTTTCTACTATTTTTTTCTTTTTGTGC  850

seq1  TAGAATGTAAGTTTTATT--ATTTAAAAAAAAATGTT-GGTTTTAGGAGC  896
      ||||||||||||||||||   |||||||||||||||| ||||||||||||
seq2  TAGAATGTAAGTTTTATTTATTTTAAAAAAAAATGTTGGGTTTTAGGAGC  900

seq1  TAATTCTCC-TCCCAAAGAAGAAGGTATCAGTACCTAAAAGACTGCACTA  945
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  TAATTCTCCTTCCCAAAGAAGAAGGTATCAGTACCTTAAAGACTGCACTA  950

seq1  CTTATTTCTTCTATA-TTTTCCTTCCTATTTATTTCCCTCGGATATTTCC  994
      ||||||||||||||| ||||||||||||||||||| ||||||||||| | 
seq2  CTTATTTCTTCTATATTTTTCCTTCCTATTTATTTTCCTCGGATATTCCA  1000

seq1  ACATTTGTTTTCTGCTTTCTATGTGCTACAAATATCAATCATTCTCCTAT  1044
       |||||| ||||||||||||||||||||||||| || |||||||| ||||
seq2  CCATTTG-TTTCTGCTTTCTATGTGCTACAAAT-TCCATCATTCT-CTAT  1047

seq1  GATGTCTGATTGATTATGTGCAATCACT-GGTCTCCAGTGTCAAACATGT  1093
      |||||| ||||||||| ||||| ||||| ||||||  ||||||| |||||
seq2  GATGTC-GATTGATTAGGTGCATTCACTGGGTCTCAGGTGTCAACCATGT  1096

seq1  CCAG-ACTCTCTCCTTCCCTTCCTTT--CTCTCTCTTTTCCCCACTCCCC  1140
      |||| ||||| ||| | | |  ||||  ||||||||||            
seq2  CCAGAACTCT-TCCGTGCAT--CTTTCCCTCTCTCTTTC-----------  1132

seq1  TCTCCTCCCCTTCCCTGCCCTCCCCTATCCTTCCTCTCTCTTTC  1184
                                                  
seq2  --------------------------------------------  1132

seq1: chr1_195969558_195970351
seq2: B6Ng01-090I02.g_69_836 (reverse)

seq1  GGATCTGAACTTCCTAGAGAGGGCTTGTGGGTGAACTGATAAGGCCTGAT  50
      ||||||| |||  |||||||||   ||| |||| |||||||||  |||||
seq2  GGATCTG-ACT--CTAGAGAGG--CTGT-GGTG-ACTGATAAG--CTGAT  41

seq1  GGTAAAGGGTTGTGGCCATTGGTGAGCATAGTGTTTTGTGTAGTATGTAC  100
      |||||  |||||| ||||||||||||||||||| | ||||||||||||| 
seq2  GGTAA--GGTTGT-GCCATTGGTGAGCATAGTG-TGTGTGTAGTATGTA-  86

seq1  CCTAACACAGCATTAGATGAGTGACTCAGAAGCAAGGCGATCAGATGAGG  150
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  CCTAACACAGCA-TAGATGAGTGACTCAGAAGCAA-GCGATCAGATGAGG  134

seq1  TACAACAACAAGAGGACAGTGTGAGTCCAAGCTCACCCAGAAATTAGAAC  200
      ||| |||   |||||||||||||||| |||||||| |||| |||||||||
seq2  TAC-ACA--CAGAGGACAGTGTGAGT-CAAGCTCA-CCAG-AATTAGAAC  178

seq1  TAGTCAGAGAAGGGCCCTCTGATTCAAACATGGAGACAGGAGGCTTGGGG  250
      |||||||||||||  |||||||||| |||||||||||||||||||| |||
seq2  TAGTCAGAGAAGG--CCTCTGATTC-AACATGGAGACAGGAGGCTT-GGG  224

seq1  AAGCAGCCAGGTGGTAGACTAAGAGAGTAATTGAGCTCTAGAACATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCAGGTGGTAGACTAAGAGAGTAATTGAGCTCTAGAACATCAGA  274

seq1  CCCAGATGTGGTTCATTGAGCAACTACTATGGCAGGGCTGATGTTCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGTGGTTCATTGAGCAACTACTATGGCAGGGCTGATGTTCTACC  324

seq1  AGACAGCTCTCATTGGATATTTTTCACCATAACCCTCTGTAGCACTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTCTCATTGGATATTTTTCACCATAACCCTCTGTAGCACTCATC  374

seq1  TTCCACAGTGGAAGAAGTTGAGCTTCTTTAAAATTGGGTTTCTTAAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGTGGAAGAAGTTGAGCTTCTTTAAAATTGGGTTTCTTAAGGTC  424

seq1  ACAGACAAATGTTTGGTGAAATCAGAATTAAACCTAAGCCTCTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAATGTTTGGTGAAATCAGAATTAAACCTAAGCCTCTCTCTCTC  474

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG  524

seq1  TGTGTGTGTGTGTGTGTGTGTGTGAGTGTGAGTGTGTGTGTGTGTATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGAGTGTGAGTGTGTGTGTGTGTATACA  574

seq1  CATGCAGAAGCCAGAGGGGATAATCTTAGGTACCTAAGAGATCTGGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGAAGCCAGAGGGGATAATCTTAGGTACCTAAGAGATCTGGTTGA  624

seq1  CCCACATTCCCAGTGCTGAGATTACAGGTATATGATATTAGGTCTGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATTCCCAGTGCTGAGATTACAGGTATATGATATTAGGTCTGGCTT  674

seq1  TTTATAACATGGCTTCTGAGAATCAAACTCAGGTCCTTGTATTTGTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACATGGCTTCTGAGAATCAAACTCAGGTCCTTGTATTTGTGAAG  724

seq1  TAAGCACTTTACTTATTGATCTATCTCCCCAGAGCAAAGAATTC  794
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTTTACTTATTGATCTATCTCCCCAGAGCAAAGAATTC  768