BAC Information

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BAC

Clone NameB6Ng01-090I13
Chromosome1 (Build37)
Map Location 36,552,852 - 36,741,313
singlet/doubletdoublet
Overlap geneCnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l
Downstream geneCox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090I13.bB6Ng01-090I13.g
ACCDH902805DH902806
length1,0541,186
definitionDH902805|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I13, 5' end.DH902806|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,552,852 - 36,553,907)(36,740,100 - 36,741,313)
sequence
gaattctctcctttggagcaggcttcaagtccaatcagaaatgcctggtt
accttgaatagtcgactgctgttgcagccggggacacatcttggctggca
ggctgcttcagcagggccagtgatggttaagccgctgctgccctctcttc
ccggtagtctactttacatggcatatcagcagtacagaaactctgaaatg
actaactctggcatgctgcttctcatgtctgcagcccgtctccttccctc
tctgtctctgcagctgagtggatgaagaggagtagagtgagaggaggccg
ctggcttcatctgagccttgctaactgaaaggacagaatggagctgtctt
gagcagagaagagaaagactgtggggtcatgagctagctcctagccctgt
caggttccaggtgttgaggcttttagcttacagttggatagaagatttga
ggacacagaagaaggctacaaaattttacttagagtctgggaatatagca
caatattcgagtgcctgcctaacctgcacacagccttgatttgggatagc
ggtgctctctgatgtgggcaggacggtgcagaccctataaccccatgcac
ttgggaggtagtggcgggagggtcaggggctcagctccacagggagcttc
agaaagttcagctacatgagaccctgccttgaagcaacagattttttttt
ttttaatttgagctatcttgacacttgtctatttaagtcactagcaagga
ctcagctctccagcattaagaggtcagggaggaaccaaggatagtaacac
acctctacacacttgtaattcaagcccttaaaaactaagtcagtcgggag
gttcatggagttcaaggtcagcacaagctacagaagacaaatctggctgc
tcacaactactgtcactccagttcagttctggagatctgacacctctgct
ggcttcaggggcactagagtacgtacatgtggtacacggagtgcatccag
ggaacacacacacatttttttattaaaaaagaaggagaaggaaggagaag
gaaa
gaattcaaatgtcctaaagacacaaaacacggggagtccctaaacagaat
ggaatcccttacggggaaagacgggccagtagaaacagccccagggtcaa
gctgggctctcagaagcctatacagtagctctgggcccagcaggtggccc
tagagcctgtttcttatctggaaactggtcaggttaccagcaccctctag
cgggctgcagacagctaacgcgcggttccgtttctggaaacagtttatcc
actgagttatcctttgtgttctcatttggttgggcttggctccgtgcctt
tctattaaactttcaaatggtgctctttaatagaaacccgcccaaacatt
taagatggcctgcgctttccaaagaacagtaaggagttcagagaggaccg
ggctgattccttgagtaaacccagctcttcataaggctgaggcaggagaa
tcagatattttaattggagtttgaggtcagcctgtggtacacagtgacta
cctgtctcaaaaacaattaatgaaattaaaagtaaaaatgcttgttgcaa
ctggaagtcggatgaattgactagaccattaaaagaaaagaggaagactc
ctccagcatactaggacagctgtgatcctgcccataccatcctggtcacc
aaagaagggctccctccagagacagaatttgctaaaattccagagtcggg
ctggcaaaattcagctctactgccctcttgcctggagaacagggccaaca
gatcattaattagctacaagtaatgcctaattaagtactggttcctcaag
tgtgtagggcacagattttcatggaagacaggtctggctgaggctaaatc
aaaatgacgcatataagtggcctctctcaatgttagttattgggccaggg
ctcaaccagtgttggctgtcatccgcaggtgacatcccttaagctgcctc
tccttcacgcttgcatactcacacagagacgcccagaacaggttctcaaa
gcagctcgtgcacattcaacagcgaaaggcgtagagctatgcacacttac
tgcggcgcctcgacttggaaagttccgtcgtagacggctgacgttaactg
cgcattccgagttcaatctcctgctcttgttcttgggccacaagcagagc
ctccgcatccgcactggaaacaggctgctgaattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_36552852_36553907
seq2: B6Ng01-090I13.b_49_1102

seq1  GAATTCTCTCCTTTGGAGCAGGCTTCAAGTCCAATCAGAAATGCCTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTTTGGAGCAGGCTTCAAGTCCAATCAGAAATGCCTGGTT  50

seq1  ACCTTGAATAGTCGACTGCTGTTGCAGCCGGGGACACATCTTGGCTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAATAGTCGACTGCTGTTGCAGCCGGGGACACATCTTGGCTGGCA  100

seq1  GGCTGCTTCAGCAGGGCCAGTGATGGTTAAGCCGCTGCTGCCCTCTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTTCAGCAGGGCCAGTGATGGTTAAGCCGCTGCTGCCCTCTCTTC  150

seq1  CCGGTAGTCTACTTTACATGGCATATCAGCAGTACAGAAACTCTGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTAGTCTACTTTACATGGCATATCAGCAGTACAGAAACTCTGAAATG  200

seq1  ACTAACTCTGGCATGCTGCTTCTCATGTCTGCAGCCCGTCTCCTTCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTCTGGCATGCTGCTTCTCATGTCTGCAGCCCGTCTCCTTCCCTC  250

seq1  TCTGTCTCTGCAGCTGAGTGGATGAAGAGGAGTAGAGTGAGAGGAGGCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTGCAGCTGAGTGGATGAAGAGGAGTAGAGTGAGAGGAGGCCG  300

seq1  CTGGCTTCATCTGAGCCTTGCTAACTGAAAGGACAGAATGGAGCTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCATCTGAGCCTTGCTAACTGAAAGGACAGAATGGAGCTGTCTT  350

seq1  GAGCAGAGAAGAGAAAGACTGTGGGGTCATGAGCTAGCTCCTAGCCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGAAGAGAAAGACTGTGGGGTCATGAGCTAGCTCCTAGCCCTGT  400

seq1  CAGGTTCCAGGTGTTGAGGCTTTTAGCTTACAGTTGGATAGAAGATTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCAGGTGTTGAGGCTTTTAGCTTACAGTTGGATAGAAGATTTGA  450

seq1  GGACACAGAAGAAGGCTACAAAATTTTACTTAGAGTCTGGGAATATAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGAAGAAGGCTACAAAATTTTACTTAGAGTCTGGGAATATAGCA  500

seq1  CAATATTCGAGTGCCTGCCTAACCTGCACACAGCCTTGATTTGGGATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCGAGTGCCTGCCTAACCTGCACACAGCCTTGATTTGGGATAGC  550

seq1  GGTGCTCTCTGATGTGGGCAGGACGGTGCAGACCCTATAACCCCATGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTCTGATGTGGGCAGGACGGTGCAGACCCTATAACCCCATGCAC  600

seq1  TTGGGAGGTAGTGGCGGGAGGGTCAGGGGCTCAGCTCCACAGGGAGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGTAGTGGCGGGAGGGTCAGGGGCTCAGCTCCACAGGGAGCTTC  650

seq1  AGAAAGTTCAGCTACATGAGACCCTGCCTTGAAGCAACAGATTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTCAGCTACATGAGACCCTGCCTTGAAGCAACAGATTTTTTTTT  700

seq1  TTTTAATTTGAGCTATCTTGACACTTGTCTATTTAAGTCACTAGCAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTGAGCTATCTTGACACTTGTCTATTTAAGTCACTAGCAAGGA  750

seq1  CTCAGCTCTCCAGCATTAAGAGGTCAGGGAGGAACCAAGGATAGTAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCTCCAGCATTAAGAGGTCAGGGAGGAACCAAGGATAGTAACAC  800

seq1  ACCTCTACACACTTGTAATTCAAGCCCTTAAAAACTAAGTCAGTCGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACACACTTGTAATTCAAGCCCTTAAAAACTAAGTCAGTCGGGAG  850

seq1  GTTCAT-GAGTTCAAGGTCAGCACAAGCTACAGAAGACAAAATCTGGCTG  899
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTCATGGAGTTCAAGGTCAGCACAAGCTACAGAAGAC-AAATCTGGCTG  899

seq1  CTCACAACTACTGTCACTCCAGTTCAGTTCTGGAGATCTGACACCCTCTG  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCACAACTACTGTCACTCCAGTTCAGTTCTGGAGATCTGACA-CCTCTG  948

seq1  CTGGCTTCCAGGGGCACTAAGAGTACGTACATGTGGTACACAGAGTGCAT  999
      ||||||| |||||||||| |||||||||||||||||||||| ||||||||
seq2  CTGGCTT-CAGGGGCACT-AGAGTACGTACATGTGGTACACGGAGTGCAT  996

seq1  CCAGGGAAACACACACACATTTTTTTTAATTAAAAA--AAAGAAAAGGAA  1047
      |||||| |||||||||||||||||||  ||||||||  || || ||||||
seq2  CCAGGG-AACACACACACATTTTTTT--ATTAAAAAAGAAGGAGAAGGAA  1043

seq1  G--AAAGGAAA  1056
      |   |||||||
seq2  GGAGAAGGAAA  1054

seq1: chr1_36740100_36741313
seq2: B6Ng01-090I13.g_66_1251 (reverse)

seq1  TGAATTTCAGCCAGCCTTGGGTTTTCCAGATGCGGATGCGGAGGGCTTGC  50
      |||| ||||| ||||||     ||||||| ||||||||||||||   |||
seq2  TGAA-TTCAG-CAGCCT----GTTTCCAG-TGCGGATGCGGAGGCTCTGC  43

seq1  TTGTGGCCCAAGATCAAAGGGAAGGCAAGGAGATTTGAACTCGGGATGCG  100
      ||||||||||||| |||   ||  || |||||| |||||||||| |||||
seq2  TTGTGGCCCAAGAACAA---GA--GC-AGGAGA-TTGAACTCGGAATGCG  86

seq1  CAGTTTAACGTTCAGCGGTCTAACGACGGGACTTTTCCAAAGTCGAGGCG  150
      ||| |||||| ||||| |||| ||||||| |||||  | |||||||||||
seq2  CAG-TTAACG-TCAGCCGTCT-ACGACGGAACTTT--CCAAGTCGAGGCG  131

seq1  CCGCAGTTAGTGGTGCATAGCTCTACGCCTTTCGCTGTTGAATGTTGGCC  200
      ||||||| ||| |||||||||||||||||||||||||||||||||    |
seq2  CCGCAGTAAGT-GTGCATAGCTCTACGCCTTTCGCTGTTGAATGT---GC  177

seq1  ACGAGCTGCTTTGAGAACCTGTTCTGGGCGTTCTTCTGTGTGAGTATGCA  250
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  ACGAGCTGCTTTGAGAACCTGTTCTGGGCGT--CTCTGTGTGAGTATGCA  225

seq1  AGCGTGAAGGAGAGGCAGCTTAAGGGATGTCAACCCTGCGGATTGACAGC  300
      ||||||||||||||||||||||||||||||||  |||||||| |||||||
seq2  AGCGTGAAGGAGAGGCAGCTTAAGGGATGTCA--CCTGCGGA-TGACAGC  272

seq1  CAACACTGGTTGAGCCCTGGCCCAATAACTAACATTGAGAGAGGCCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGGTTGAGCCCTGGCCCAATAACTAACATTGAGAGAGGCCACTT  322

seq1  ATATGCGTCATTTTGATTTAGCCTCAGCCAGACCTGTCTTCCATGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCGTCATTTTGATTTAGCCTCAGCCAGACCTGTCTTCCATGAAAAT  372

seq1  CTGTGCCCTACACACTTGAGGAACCAGTACTTAATTAGGCATTACTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCTACACACTTGAGGAACCAGTACTTAATTAGGCATTACTTGTA  422

seq1  GCTAATTAATGATCTGTTGGCCCTGTTCTCCAGGCAAGAGGGCAGTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTAATGATCTGTTGGCCCTGTTCTCCAGGCAAGAGGGCAGTAGAG  472

seq1  CTGAATTTTGCCAGCCCGACTCTGGAATTTTAGCAAATTCTGTCTCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTTGCCAGCCCGACTCTGGAATTTTAGCAAATTCTGTCTCTGGA  522

seq1  GGGAGCCCTTCTTTGGTGACCAGGATGGTATGGGCAGGATCACAGCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCCTTCTTTGGTGACCAGGATGGTATGGGCAGGATCACAGCTGTC  572

seq1  CTAGTATGCTGGAGGAGTCTTCCTCTTTTCTTTTAATGGTCTAGTCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATGCTGGAGGAGTCTTCCTCTTTTCTTTTAATGGTCTAGTCAATT  622

seq1  CATCCGACTTCCAGTTGCAACAAGCATTTTTACTTTTAATTTCATTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGACTTCCAGTTGCAACAAGCATTTTTACTTTTAATTTCATTAATT  672

seq1  GTTTTTGAGACAGGTAGTCACTGTGTACCACAGGCTGACCTCAAACTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAGACAGGTAGTCACTGTGTACCACAGGCTGACCTCAAACTCCA  722

seq1  ATTAAAATATCTGATTCTCCTGCCTCAGCCTTATGAAGAGCTGGGTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATATCTGATTCTCCTGCCTCAGCCTTATGAAGAGCTGGGTTTAC  772

seq1  TCAAGGAATCAGCCCGGTCCTCTCTGAACTCCTTACTGTTCTTTGGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAATCAGCCCGGTCCTCTCTGAACTCCTTACTGTTCTTTGGAAAG  822

seq1  CGCAGGCCATCTTAAATGTTTGGGCGGGTTTCTATTAAAGAGCACCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGCCATCTTAAATGTTTGGGCGGGTTTCTATTAAAGAGCACCATTT  872

seq1  GAAAGTTTAATAGAAAGGCACGGAGCCAAGCCCAACCAAATGAGAACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTAATAGAAAGGCACGGAGCCAAGCCCAACCAAATGAGAACACA  922

seq1  AAGGATAACTCAGTGGATAAACTGTTTCCAGAAACGGAACCGCGCGTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAACTCAGTGGATAAACTGTTTCCAGAAACGGAACCGCGCGTTAG  972

seq1  CTGTCTGCAGCCCGCTAGAGGGTGCTGGTAACCTGACCAGTTTCCAGATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCAGCCCGCTAGAGGGTGCTGGTAACCTGACCAGTTTCCAGATA  1022

seq1  AGAAACAGGCTCTAGGGCCACCTGCTGGGCCCAGAGCTACTGTATAGGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGGCTCTAGGGCCACCTGCTGGGCCCAGAGCTACTGTATAGGCT  1072

seq1  TCTGAGAGCCCAGCTTGACCCTGGGGCTGTTTCTACTGGCCCGTCTTTCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGCCCAGCTTGACCCTGGGGCTGTTTCTACTGGCCCGTCTTTCC  1122

seq1  CCGTAAGGGATTCCATTCTGTTTAGGGACTCCCCGTGTTTTGTGTCTTTA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAAGGGATTCCATTCTGTTTAGGGACTCCCCGTGTTTTGTGTCTTTA  1172

seq1  GGACATTTGAATTC  1214
      ||||||||||||||
seq2  GGACATTTGAATTC  1186