BAC Information

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BAC

Clone NameB6Ng01-090J17
Chromosome1 (Build37)
Map Location 41,589,573 - 41,734,239
singlet/doubletdoublet
Overlap genenone
Upstream geneIl18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090J17.bB6Ng01-090J17.g
ACCDH902859DH902860
length1,1391,129
definitionDH902859|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J17, 5' end.DH902860|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,589,573 - 41,590,723)(41,733,093 - 41,734,239)
sequence
gaattctcttgagagtcagtaatggaatcggataaaggccacggttgatt
tactggtgtccctacatgttgaaatactgagtagtagtttcttaaacaac
acaatcagagatatatttgtctattgtttcactatatagagatatatttg
tctattgtttcactgattagtacactgctggacacagcagaatataaatg
cttgagaattggtttggtgaaaactagttaatgaaccacatgtataggtg
gagtgggaagtgttgtttcagccactgctctgtcactgtgtctccttacc
ctttcctgaggctatgaagctaaatatgttgacacattggattacagcag
tgttttatccacctcatataagctgatccaagatagggtccaactctgta
atcagtgaatgaaatacaaggacatacctcttacattatccactgtcttc
ctcactagaaaacaatctgaagtacatatcatcctagaaaacaattcctt
catccaggacatctttcattttgtccataaaactcagattccctcttttg
ctcttccctcagcacagagacaacagctgtatttcaatttggcaagttcc
cataggctgcctcatctcttctgcgtttcatgactcacaataagcatatg
acaaccttgtattccatccacagaagtctactcctctctctctctggtgc
cagcattctacaaatttgtcacattctgattgaagatatggaaaatgcta
gagtataattcactatacatatatttatttgagaaatatcgttctttaga
gtcgtttcatttattcccacctacaacattaaaattccgcatgatgttat
cagctcataatttttaagcaagacagtatggcttctaagctacaagagta
ctttttaaatctctttatatctattctgcaaatatgatccttaaatgtta
tcctcatttacatacttaatcaaattaatatctgatttcctgctgaatag
gatccagagatgttaatatatcagatctttcttaagtctatattctcttt
tggatactatttatttttgagagatacggaggatgagatatttgtttaag
attctgtatgcagcatggcactccatgtccttcttctct
gaattcccatgctggaagcacaaatcttccgtgaaactgcccacctgctt
ctgcctgcggtggcaatgggaagagcagcagtctggagtaccgggcagcc
atggctggagccagcttccctctaccctgtagactcgtcgagtaacatca
gaagaaagtgagtcgggatacttagaattcactgtagcaaagagaatcac
aacaacaaaagcactctcgctgatgaaattggaattttttttttaattaa
cacttctaattagaatttaacatctcactagcttcgtatgggatttttcg
cttccttaacttcacggaaacctatccgttggctctaaataggcagtcac
ataccatgcaccactcaagggtttcaattaatccccaggcctgtaactcc
gattgtgaacttgtcttttttgctcttgtgccttttccccatacagaacg
agatctgagttaaggtccctcagcaggttatgggaggctccctcaccacc
tcctactctcttgtcttcctcctgtgtctgtaggaaagcattttgcaaac
ctgacccttagtatgtagtaacaatgagtgttgcgtaatctcctctgctt
gtcccgaggatgagcgttctctgtgattctgacaagacttctgtccgagt
tggatttgaatcagtgtctaatgcacaagtgtgaaccctacagtgcttca
tccatgcgattgatcagaaacacaagtagcagatactcgtggctcgaaag
tcttgcctggtgtactttattaaactttattggcattaatgaaatagaaa
gtgattagttatttcatgtatggcagccactaggatgtaccctcagtgaa
tatgttttctccctcacacatattttggggatgctgggtatcagcgaaca
gccagcagctcacttccagtttgcatgttcctcctgaattctcaaacctg
cctcatcagcaaatgcagaatccagagactagagtactggtgggacacat
acacactgccaaaggtacccatctatgtgtcatgcttttgatattgctag
tatttggtgaaatagctacttattgcaagcaagcttgattatttctacct
ccccactttcacccttcttggagagaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41589573_41590723
seq2: B6Ng01-090J17.b_45_1183

seq1  GAATTCTCTTGAGAGTCAGTAATGGAAT-GGATAAAGGCCACGGTTGATT  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCTCTTGAGAGTCAGTAATGGAATCGGATAAAGGCCACGGTTGATT  50

seq1  TACTGGTGTCCCTACATGTTGAAATACTGAGTAGTAGTTTCTTAAACAAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGTCCCTACATGTTGAAATACTGAGTAGTAGTTTCTTAAACAAC  100

seq1  ACAATCAGAGATATATTTGTCTATTGTTTCACTATATAGAGATATATTTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAGAGATATATTTGTCTATTGTTTCACTATATAGAGATATATTTG  150

seq1  TCTATTGTTTCACTGATTAGTACACTGCTGGACACAGCAGAATATAAATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTTCACTGATTAGTACACTGCTGGACACAGCAGAATATAAATG  200

seq1  CTTGAGAATTGGTTTGGTGAAAACTAGTTAATGAACCACATGTATAGGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAATTGGTTTGGTGAAAACTAGTTAATGAACCACATGTATAGGTG  250

seq1  GAGTGGGAAGTGTTGTTTCAGCCACTGCTCTGTCACTGTGTCTCCTTACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGAAGTGTTGTTTCAGCCACTGCTCTGTCACTGTGTCTCCTTACC  300

seq1  CTTTCCTGAGGCTATGAAGCTAAATATGTTGACACATTGGATTACAGCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGAGGCTATGAAGCTAAATATGTTGACACATTGGATTACAGCAG  350

seq1  TGTTTTATCCACCTCATATAAGCTGATCCAAGATAGGGTCCAACTCTGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATCCACCTCATATAAGCTGATCCAAGATAGGGTCCAACTCTGTA  400

seq1  ATCAGTGAATGAAATACAAGGACATACCTCTTACATTATCCACTGTCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGAATGAAATACAAGGACATACCTCTTACATTATCCACTGTCTTC  450

seq1  CTCACTAGAAAACAATCTGAAGTACATATCATCCTAGAAAACAATTCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAGAAAACAATCTGAAGTACATATCATCCTAGAAAACAATTCCTT  500

seq1  CATCCAGGACATCTTTCATTTTGTCCATAAAACTCAGATTCCCTCTTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGGACATCTTTCATTTTGTCCATAAAACTCAGATTCCCTCTTTTG  550

seq1  CTCTTCCCTCAGCACAGAGACAACAGCTGTATTTCAATTTGGCAAGTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCTCAGCACAGAGACAACAGCTGTATTTCAATTTGGCAAGTTCC  600

seq1  CATAGGCTGCCTCATCTCTTCTGCGTTTCATGACTCACAATAAGCATATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCTGCCTCATCTCTTCTGCGTTTCATGACTCACAATAAGCATATG  650

seq1  ACAACCTTGTATTCCATCCACAGAAGTCTACTCCTCTCTCTCTCTGGTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTGTATTCCATCCACAGAAGTCTACTCCTCTCTCTCTCTGGTGC  700

seq1  CAGCATTCTACAAATTTGTCACATTCTGATTGAAGATATGGAAAATGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCTACAAATTTGTCACATTCTGATTGAAGATATGGAAAATGCTA  750

seq1  GAGTATAATTCACTATACATATATTTATTTGAGAAATATCGTTCTTTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAATTCACTATACATATATTTATTTGAGAAATATCGTTCTTTAGA  800

seq1  GTCGTTTCATTTATTCCCACCTACAACATTAAAATTCCGCATGATGTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTTCATTTATTCCCACCTACAACATTAAAATTCCGCATGATGTTAT  850

seq1  CAGCTCATAATTTTTAAGCAAGACAGTATGGCTTCTAAGCTACAAGAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATAATTTTTAAGCAAGACAGTATGGCTTCTAAGCTACAAGAGTA  900

seq1  CTTTTTAAAATCTCTTTAATATCCTATTCTGCAAATATGATCCTTAAATG  949
      |||||| |||||||||| |||| |||||||||||||||||||||||||||
seq2  CTTTTT-AAATCTCTTT-ATAT-CTATTCTGCAAATATGATCCTTAAATG  947

seq1  TTATCCTCATTTACATACTTAAATCAAAATTAATATCTGAATTTCCTGCT  999
      |||||||||||||||||||| |||| ||||||||||||| ||||||||||
seq2  TTATCCTCATTTACATACTT-AATC-AAATTAATATCTG-ATTTCCTGCT  994

seq1  GAAATAGAATCCAGAGATGGTAA-ATATTATCCAGATC-TTCTTATAGTC  1047
      | ||||| ||||||||||| ||| ||||    |||||| |||||| ||||
seq2  G-AATAGGATCCAGAGATGTTAATATAT----CAGATCTTTCTTA-AGTC  1038

seq1  TTATTAATCTCTCTTGGATACTATTTTATTTATGAGAGATACAGAAGAAA  1097
      |   || ||||| |||||||||| ||||||| |||||||||| || |  |
seq2  T--ATATTCTCTTTTGGATACTA-TTTATTTTTGAGAGATACGGAGG--A  1083

seq1  TGAAGATAATTGTTTAAGATTCTG-ATGCAGCCATTGGGCAACTCCA---  1143
      || ||||| ||||||||||||||| |||||| |||  ||| ||||||   
seq2  TG-AGATATTTGTTTAAGATTCTGTATGCAG-CAT--GGC-ACTCCATGT  1128

seq1  ---TCTTCTCT  1151
         ||||||||
seq2  CCTTCTTCTCT  1139

seq1: chr1_41733093_41734239
seq2: B6Ng01-090J17.g_67_1195 (reverse)

seq1  ACCTCTCTC--AGGAGGGTGAAAGTGGAGAGTTAGAAAAAATGATCTAAA  48
      |||||||||  || ||||||||||||| ||| |||||| ||     | ||
seq2  ACCTCTCTCCAAGAAGGGTGAAAGTGGGGAGGTAGAAATAA-----TCAA  45

seq1  GCTTGCCTTGCATATAAAGTAAGACTATATCACAAAAATACTAAGCAAAT  98
      ||||| |||||| || |||||   |||| ||||  ||||||| ||| |||
seq2  GCTTG-CTTGCA-AT-AAGTA--GCTATTTCAC-CAAATACT-AGC-AAT  87

seq1  ATCAAAAAGCATTGACACATAGATGGGGTACCTTTGGCAGTGTGTATGTG  148
      ||| ||||||| |||||||||||| |||||||||||||||||||||||||
seq2  ATC-AAAAGCA-TGACACATAGAT-GGGTACCTTTGGCAGTGTGTATGTG  134

seq1  TCCCACCAGTACTCTAAGTCTTCTGGATTTCTGCATTTGCTGATTGAGGC  198
      ||||||||||||||| |||| |||||| ||||||||||||||| ||||||
seq2  TCCCACCAGTACTCT-AGTC-TCTGGA-TTCTGCATTTGCTGA-TGAGGC  180

seq1  AGGTTTGAG-ATTCAGGAGGAACATGCAAACTTGGAAGTGAGCTGCTGGC  247
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  AGGTTTGAGAATTCAGGAGGAACATGCAAAC-TGGAAGTGAGCTGCTGGC  229

seq1  TGTTCGCTGATACCCAGCATTCCCAAAATATGTGTTGAGGAGAAAACATA  297
      |||||||||||||||||||| ||||||||||||||   ||||||||||||
seq2  TGTTCGCTGATACCCAGCATCCCCAAAATATGTGTGAGGGAGAAAACATA  279

seq1  TTCACTGAGGGTACAT-CTAGTGGCTTGCCATACATGAAATAACTAATCA  346
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  TTCACTGAGGGTACATCCTAGTGGC-TGCCATACATGAAATAACTAATCA  328

seq1  CTTTCTATTTCATTAATGCCAATAAAGTTTAATAAAGTACACCAGGCAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATTTCATTAATGCCAATAAAGTTTAATAAAGTACACCAGGCAAG  378

seq1  ACTTTCGAGCCACGAGTATCTGCTACTTGTGTTTCTGATCAATCGCATGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCGAGCCACGAGTATCTGCTACTTGTGTTTCTGATCAATCGCATGG  428

seq1  ATGAAGCACTGTAGGGTTCACACTTGTGCATTAGACACTGATTCAAATCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCACTGTAGGGTTCACACTTGTGCATTAGACACTGATTCAAATCC  478

seq1  AACTCGGACAGAAGTCTTGTCAGAATCACAGAGAACGCTCATCCTCGGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGGACAGAAGTCTTGTCAGAATCACAGAGAACGCTCATCCTCGGGA  528

seq1  CAAGCAGAGGAGATTACGCAACACTCATTGTTACTACATACTAAGGGTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAGGAGATTACGCAACACTCATTGTTACTACATACTAAGGGTCA  578

seq1  GGTTTGCAAAATGCTTTCCTACAGACACAGGAGGAAGACAAGAGAGTAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCAAAATGCTTTCCTACAGACACAGGAGGAAGACAAGAGAGTAGG  628

seq1  AGGTGGTGAGGGAGCCTCCCATAACCTGCTGAGGGACCTTAACTCAGATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTGAGGGAGCCTCCCATAACCTGCTGAGGGACCTTAACTCAGATC  678

seq1  TCGTTCTGTATGGGGAAAAGGCACAAGAGCAAAAAAGACAAGTTCACAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTGTATGGGGAAAAGGCACAAGAGCAAAAAAGACAAGTTCACAAT  728

seq1  CGGAGTTACAGGCCTGGGGATTAATTGAAACCCTTGAGTGGTGCATGGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTTACAGGCCTGGGGATTAATTGAAACCCTTGAGTGGTGCATGGTA  778

seq1  TGTGACTGCCTATTTAGAGCCAACGGATAGGTTTCCGTGAAGTTAAGGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGCCTATTTAGAGCCAACGGATAGGTTTCCGTGAAGTTAAGGAA  828

seq1  GCGAAAAATCCCATACGAAGCTAGTGAGATGTTAAATTCTAATTAGAAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAAAATCCCATACGAAGCTAGTGAGATGTTAAATTCTAATTAGAAGT  878

seq1  GTTAATTAAAAAAAAAATTCCAATTTCATCAGCGAGAGTGCTTTTGTTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTAAAAAAAAAATTCCAATTTCATCAGCGAGAGTGCTTTTGTTGT  928

seq1  TGTGATTCTCTTTGCTACAGTGAATTCTAAGTATCCCGACTCACTTTCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCTCTTTGCTACAGTGAATTCTAAGTATCCCGACTCACTTTCTT  978

seq1  CTGATGTTACTCGACGAGTCTACAGGGTAGAGGGAAGCTGGCTCCAGCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTACTCGACGAGTCTACAGGGTAGAGGGAAGCTGGCTCCAGCCA  1028

seq1  TGGCTGCCCGGTACTCCAGACTGCTGCTCTTCCCATTGCCACCGCAGGCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCCGGTACTCCAGACTGCTGCTCTTCCCATTGCCACCGCAGGCA  1078

seq1  GAAGCAGGTGGGCAGTTTCACGGAAGATTTGTGCTTCCAGCATGGGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGTGGGCAGTTTCACGGAAGATTTGTGCTTCCAGCATGGGAATT  1128

seq1  C  1147
      |
seq2  C  1129