BAC Information

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BAC

Clone NameB6Ng01-090J24
Chromosome1 (Build37)
Map Location 24,041,810 - 24,250,479
singlet/doubletdoublet
Overlap gene4921533L14Rik, LOC665808, Col9a1
Upstream gene4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik
Downstream geneCol19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171, Bai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090J24.bB6Ng01-090J24.g
ACCDH902873DH902874
length1,1671,120
definitionDH902873|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J24, 5' end.DH902874|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,249,309 - 24,250,479)(24,041,810 - 24,042,965)
sequence
gaattcattaatctagcagaatacaaaattaataaacagaaatcaggtgg
cctcatacatagaagtagctaccagttatgagacatggccaagaagtact
acatacagtagtaattaaaatgctaaacaaccatatgtggtctcaatgga
aatatacaagtaaaacatggaagaagctgagccttcttggtgataccaag
acttgaaaaaatgttctgaattaagataacattccaataagtagttgtca
tctctccctaagctaaatattgattacaatcccagttttaagcacactgg
aataaccacaaacttcatccaaataaagtagcatgaaggaattaatccta
ccagttatcaaccctgttatgatggtgtagtacttacccatgaggcaaaa
aggccaaataggtccaaatatgcataagacattggtttatcacaaaggtg
gcatcttgtatcttaatatttattttatcatgttctatatgtgtttctgt
gtgtatgcatgtgcacatgtgagggggctgcctgcaaacaccagaagact
gcatggaatctcttggaactggagtttcagatgcatatgatcttcctgtt
gtgggtgctgcaaattgagcaagagcagctagtgctcgtgacgtccgagc
tgtctatctagcccccagtcctaaagtgagaaatgtttagcaaagtcatc
aaatgttgaggagaagtgagaaaaatatagaactgtatattgctaaggaa
agtgagacaatagcaatcaaattacaagtggaagttccgggaattctact
ttccagaaattcattctcagaacaatcaaaaattttggaaaggaagatgg
aattagaagtagaaaaggaagtctgtgttgatattttgtatcaagatgaa
atagtcggctgctgtgggccctgagactagaaacaaagggaacatcaaag
gaaacagtcagtgaggttctaccacagagagactatacacagctcgggga
catcaccagcagctctttggaatggtctcctggacatactgtcaaatgaa
aaacaaatgcgtccagattgcttacttaagacatgggattcggttcctaa
gttggaccagggagtgcatgttctcagaatgtaccagcattgatgttcag
ttctttaccctagaatg
gaattcacatgagagcatcactgtactaaggacaatatccgtcaaagaga
acatgatgatttgcagcgacaacagcatataactagtcagacaacactgt
gagaagcaaagcttgcgtgctttctctttccttttttgagactgggtctt
attctgtaaccttgcacttgctttgtacttcatgttgatcaaaagctcat
ggcaagcctgactctgttatccaggcgcatggataacagacatgaactac
catgcccagctataataacctgatatagaatatccacctcaggcatggca
gcacacgcctttacttccagtattgagaggcagaagtggatctctgtgag
tacaaggccagcatgatctacatgctgagttccaggacagctagagcagc
ataggaagactgtctcaaaaaaagaaaaagaaagacgatacaaaaaactg
actaatccaactagctagctaatccccttccaaaaattcttgtaagtaaa
ggataaaaaaagaaatactaataaaaaaatacaacttgggaccttttaac
ataggaactaatattccaataattttggaagaataggatgcttgtatgtt
caggttgagtttatctaaactttgtaataattctatcattaggaaagggc
taaattacaggtattactctaaagaaagtagaaaaatcatgaattacata
aattttccaagtaaaagttaaaataatttaaaagaaaaaaatgccttaga
aagtacgttattggcaattaaagtttctttggacagctatattcaggaaa
atgctatgtatgtttttgaatgcttacatataaagttatttataattaca
gtaaaagccaaagtctgttcaaaccttgtaaaaaataaaacaaaaactat
ttagaaaatatcctttaataacttaacattcatagtcacagttgtattaa
aagaatataatagttagagagtagtatatctttaaaatgcagacaacttt
tacatcactgtaaaatgtcaatgtggctattcaaactcttctagctaaat
gtacttaccctgtaaaatatattcgtcatcatcatcatcatcatcattca
tttggtctggtcaaactcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_24249309_24250479
seq2: B6Ng01-090J24.b_48_1214 (reverse)

seq1  CATTCTTATGGTAAAGACCTGACAATCAATGCTGTGTACA-TCTGGGGAC  49
      ||||| || |||||||| ||||  |||||||||| ||||| |||| | ||
seq2  CATTC-TAGGGTAAAGAACTGAACATCAATGCTG-GTACATTCTGAGAAC  48

seq1  ATGCACTCCCTGTGTCC-ACTTATGAACAGAATCACATTGTTCTTTAGTA  98
      |||||||||||| |||| ||||| |||| ||||| |||   |||| ||||
seq2  ATGCACTCCCTG-GTCCAACTTAGGAACCGAATCCCAT--GTCTTAAGTA  95

seq1  AGCAATCTGGACCGCATTTGTTTTTCATTTGACAGTATGTCCAGGAGACC  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTGGA-CGCATTTGTTTTTCATTTGACAGTATGTCCAGGAGACC  144

seq1  ATTCCAAAGAGCTGCTGGTGATGTTCCCGAGCTGTGTTATAGTCTCTTCT  198
      |||||||||||||||||||||||| ||||||||||| ||||||||| |||
seq2  ATTCCAAAGAGCTGCTGGTGATGTCCCCGAGCTGTG-TATAGTCTC-TCT  192

seq1  GTGGTAGAACCTCACTGACTGTTTCCCTTTGATGTTCCCTTTGTTTCTAG  248
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGGTAGAACCTCACTGACTGTTT-CCTTTGATGTTCCCTTTGTTTCTAG  241

seq1  TCTTCAGGGCCCACAGCAGCCGACTATTTCATCTTGATACAAAATATCAA  298
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TCAGGGCCCACAGCAGCCGACTATTTCATCTTGATACAAAATATCAA  290

seq1  CACAGACTTCC-TTTCTACTTCTAATTCCATCTTCC-TTCCAAAATTTTT  346
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  CACAGACTTCCTTTTCTACTTCTAATTCCATCTTCCTTTCCAAAATTTTT  340

seq1  GATTGTTCTGAGAATGAATTTCTGG-AAGTAGAATTCCCGGAACTTCCAC  395
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATTGTTCTGAGAATGAATTTCTGGAAAGTAGAATTCCCGGAACTTCCAC  390

seq1  TTGTAATTTGATTGCTATTGTCTCACTTTCCTTAGCAATATACAGTTCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTGATTGCTATTGTCTCACTTTCCTTAGCAATATACAGTTCTA  440

seq1  TATTTTTCTCACTTCTCCTCAACATTTGATGAC-TTGCTAAACATTTCTC  494
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATTTTTCTCACTTCTCCTCAACATTTGATGACTTTGCTAAACATTTCTC  490

seq1  ACTTTAGGACTGGGGGCTAGATAGACAGCTCGGACGTCACGAGCACTAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGACTGGGGGCTAGATAGACAGCTCGGACGTCACGAGCACTAGC  540

seq1  TGCTCTTGCTCAATTTGCAGCACCCACAACAGGAAGATCATATGCATCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTGCTCAATTTGCAGCACCCACAACAGGAAGATCATATGCATCTG  590

seq1  AAACTCCAGTTCCAAGAGATTCCATGCAGTCTTCTGGTGTTTGCAGGCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAGTTCCAAGAGATTCCATGCAGTCTTCTGGTGTTTGCAGGCAG  640

seq1  CCCCCTCACATGTGCACATGCATACACACAGAAACACATATAGAACATGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCACATGTGCACATGCATACACACAGAAACACATATAGAACATGA  690

seq1  TAAAATAAATATTAAGATACAAGATGCCACCTTTGTGATAAACCAATGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATATTAAGATACAAGATGCCACCTTTGTGATAAACCAATGTC  740

seq1  TTATGCATATTTGGACCTATTTGGCCTTTTTGCCTCATGGGTAAGTACTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATATTTGGACCTATTTGGCCTTTTTGCCTCATGGGTAAGTACTA  790

seq1  CACCATCATAACAGGGTTGATAACTGGTAGGATTAATTCCTTCATGCTAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCATAACAGGGTTGATAACTGGTAGGATTAATTCCTTCATGCTAC  840

seq1  TTTATTTGGATGAAGTTTGTGGTTATTCCAGTGTGCTTAAAACTGGGATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGGATGAAGTTTGTGGTTATTCCAGTGTGCTTAAAACTGGGATT  890

seq1  GTAATCAATATTTAGCTTAGGGAGAGATGACAACTACTTATTGGAATGTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAATATTTAGCTTAGGGAGAGATGACAACTACTTATTGGAATGTT  940

seq1  ATCTTAATTCAGAACATTTTTTCAAGTCTTGGTATCACCAAGAAGGCTCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATTCAGAACATTTTTTCAAGTCTTGGTATCACCAAGAAGGCTCA  990

seq1  GCTTCTTCCATGTTTTACTTGTATATTTCCATTGAGACCACATATGGTTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCCATGTTTTACTTGTATATTTCCATTGAGACCACATATGGTTG  1040

seq1  TTTAGCATTTTAATTACTACTGTATGTAGTACTTCTTGGCCATGTCTCAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATTTTAATTACTACTGTATGTAGTACTTCTTGGCCATGTCTCAT  1090

seq1  AACTGGTAGCTACTTCTATGTATGAGGCCACCTGATTTCTGTTTATTAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTAGCTACTTCTATGTATGAGGCCACCTGATTTCTGTTTATTAAT  1140

seq1  TTTGTATTCTGCTAGATTAATGAATTC  1171
      |||||||||||||||||||||||||||
seq2  TTTGTATTCTGCTAGATTAATGAATTC  1167

seq1: chr1_24041810_24042965
seq2: B6Ng01-090J24.g_70_1189

seq1  GAATTCACATGAGAGCATCACTGTACTAAGGACAATATCCGTCAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGAGAGCATCACTGTACTAAGGACAATATCCGTCAAAGAGA  50

seq1  ACATGATGATTTGCAGCGACAACAGCATATAACTAGTCAGACAACACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGATTTGCAGCGACAACAGCATATAACTAGTCAGACAACACTGT  100

seq1  GAGAAGCAAAGCTTGCGTGCTTTCTCTTTCCTTTTTTGAGACTGGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAAGCTTGCGTGCTTTCTCTTTCCTTTTTTGAGACTGGGTCTT  150

seq1  ATTCTGTAACCTTGCACTTGCTTTGTACTTCATGTTGATCAAAAGCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAACCTTGCACTTGCTTTGTACTTCATGTTGATCAAAAGCTCAT  200

seq1  GGCAAGCCTGACTCTGTTATCCAGGCGCATGGATAACAGACATGAACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCCTGACTCTGTTATCCAGGCGCATGGATAACAGACATGAACTAC  250

seq1  CATGCCCAGCTATAATAACCTGATATAGAATATCCACCTCAGGCATGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCAGCTATAATAACCTGATATAGAATATCCACCTCAGGCATGGCA  300

seq1  GCACACGCCTTTACTTCCAGTATTGAGAGGCAGAAGTGGATCTCTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGCCTTTACTTCCAGTATTGAGAGGCAGAAGTGGATCTCTGTGAG  350

seq1  TACAAGGCCAGCATGATCTACATGCTGAGTTCCAGGACAGCTAGAGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGCCAGCATGATCTACATGCTGAGTTCCAGGACAGCTAGAGCAGC  400

seq1  ATAGGAAGACTGTCTCAAAAAAAGAAAAAGAAAGACGATACAAAAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGACTGTCTCAAAAAAAGAAAAAGAAAGACGATACAAAAAACTG  450

seq1  ACTAATCCAACTAGCTAGCTAATCCCCTTCCAAAAATTCTTGTAAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCCAACTAGCTAGCTAATCCCCTTCCAAAAATTCTTGTAAGTAAA  500

seq1  GGATAAAAAAAGAAATACTAATAAAAAAATACAACTTGGGACCTTTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAAAAAGAAATACTAATAAAAAAATACAACTTGGGACCTTTTAAC  550

seq1  ATAGGAACTAATATTCCAATAATTTTGGAAGAATAGGATGCTTGTATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAACTAATATTCCAATAATTTTGGAAGAATAGGATGCTTGTATGTT  600

seq1  CAGGTTGAGTTTATCTAAACTTTGTAATAATTCTATCATTAGGAAAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGAGTTTATCTAAACTTTGTAATAATTCTATCATTAGGAAAGGGC  650

seq1  TAAATTACAGGTATTACTCTAAAGAAAGTAG-AAAATCATGAATTACATA  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAAATTACAGGTATTACTCTAAAGAAAGTAGAAAAATCATGAATTACATA  700

seq1  AATTTTCCAAGTAAAAGTTAAAATAATTTAAAAGAAAAAAATGCCTTAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCAAGTAAAAGTTAAAATAATTTAAAAGAAAAAAATGCCTTAGA  750

seq1  AAGTACGTTATTGGCAATTAAAGTTTACTTTGGACAGCTATATTCAGGAA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGTACGTTATTGGCAATTAAAGTTT-CTTTGGACAGCTATATTCAGGAA  799

seq1  AATGCTATGTATGTTTTTGAATGCTTACATATAAAAGTTATTTATAATTA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATGCTATGTATGTTTTTGAATGCTTACATAT-AAAGTTATTTATAATTA  848

seq1  CAGTAAAAGCCAAAGTCTGTTCAAACCTTGTAAAAAATAAAACAAAAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAAGCCAAAGTCTGTTCAAACCTTGTAAAAAATAAAACAAAAACT  898

seq1  ATTTAGAAAATATTCCTTAATAACTTAACATTCATAGTCACAGTTGTATT  949
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAAATATCCTTTAATAACTTAACATTCATAGTCACAGTTGTATT  948

seq1  AAAAGAATATTAAATAGTTTTAGAGAGTAGTATATCTTTAAAAATGCAAG  999
      ||||||||||  |||||  |||||||||||||||||||| ||||||| ||
seq2  AAAAGAATAT--AATAG--TTAGAGAGTAGTATATCTTT-AAAATGC-AG  992

seq1  ACAAACTTTTTACATCACTGTAAAAATGTCAATGTGGCTATTTCAAACTC  1049
      ||||   |||||||||||||| |||||||||||||||||| |||||||||
seq2  ACAA--CTTTTACATCACTGT-AAAATGTCAATGTGGCTA-TTCAAACTC  1038

seq1  TTCCTAGGACATAAATTGTACCTACACTGTTAAAATATTAATTCGTTCAT  1099
      || ||||    |||| ||||| ||| ||| ||||||||  |||||     
seq2  TT-CTAG---CTAAA-TGTACTTACCCTG-TAAAATAT--ATTCG-----  1075

seq1  TCATTCATTCATTCATTCATTCATTCATTCATTTTTGGTGTCTTGGGTCA  1149
      ||| ||| ||| ||| ||| ||| ||||||||||     ||||  |||||
seq2  TCA-TCA-TCA-TCA-TCA-TCA-TCATTCATTT----GGTCT--GGTCA  1113

seq1  AACTCAG  1156
      |||||||
seq2  AACTCAG  1120