BAC Information

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BAC

Clone NameB6Ng01-090L06
Chromosome1 (Build37)
Map Location 114,368,879 - 114,501,425
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090L06.bB6Ng01-090L06.g
ACCDH902933DH902934
length1,0021,083
definitionDH902933|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L06, 5' end.DH902934|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,500,434 - 114,501,425)(114,368,879 - 114,369,963)
sequence
gaattcttttcctttgctgggttacacagggtcagtttctgatccaccaa
cattcccagaagcttcatagtataaatttttataaaactgcttttttgtt
taataatgaattttcaagtaatttgttttccaaaagttacatgtacatat
aaacataaaaatagtatgagattgggcagtttttttttatgagatactta
gcatggttaatttattaagccctgtaaatatttataaaaaatctttgtga
aaacaaactcctgtcaaaatttaataggagtctcaaatgcagaaagagaa
ggaccttagagaaagcaaacatcaaaacaaaaagttccttcttaacatgt
aactaaatattttataaaagtacataatgctccaacttgggaacaccata
atgccgtaaaagatatctttacattaatgtttattgcaacattttttaat
tgttttttttaattaggtatttttctcatttacatttccaatgctgtcca
aaaagtcccccataccctccccccgaccccactacccacccactcccact
ttttggccctggcgttctcctgtactgggccatataaagtttgcaagtcc
aatgggcctctctttccagagatggccaactaggccatctttttgataca
tatgcagctagagtcaagagctccggggtactggttagttcataatgttg
tttccacctatagggttgcagatccctttagctccttgggtatttttctc
tagctcctccattgagggccctgtgaccccatccaatagctgacatgtca
tgtccattgttctacatttgtgacctccaatactttttctttagagtcca
gtttaatgattgttgattttgcaatgatatttgaatttctcttgtaaatg
taacacttgccattttttaaaattttcctcatattaggaattgaaactaa
aatcatggaaatactgaaaccagtattcccccccaattcaatatatctaa
ag
gaattccatatgaggaattgttcaatttttcttgtgttgctgtctactat
aatgctaaatactggatgccaaggtctcattgccctcagggaaaaagggg
gaaaagagacccttatatcaaggatatatatatatatatatatatccttg
cttcttaacttaaaattgttgtttaagtaatgatgcctacagtctgtagc
tgggcacaacaggggtactcacagcttcagttccagagcagaggagagaa
aaaagagagaggacgatgccatggggtagatagatcatgagaacatgacc
atgaggcctgaaaagttgaagtaagaaagaccatggcagaacatggccaa
ttatatctcggtgttaatgacaggaagatggacaaaataaatagatgatt
gatatctgcccaggtctaatggtattaatgcttttatttcaacaatttca
gaactaaatgatcaaaggtatggtaaaaatactcaccaatatttatgaca
aagaataagcaaacgttttaagataattagacagaatccatttcgatgac
aacccctgtctcttctgtgatcagtgttaggagacacagtggaaatttct
aagtggcacttaaatcaagtaaaaaaattttgagacaagaaagaatttat
tatcttgctgtgctgtgcattcatagtgaagtgtaacatagccctctttg
accagttatataacttttcttttgcaaaatccagaatttcagttttaaga
attatttttagaatgcagttttctagtttaaaagccaggtgataatttac
gtaaacaaggagatttatgtacagaaatgaatgtaatagaattattctag
ccagctgagataacaagtatgtattgagagtagaattgcctcagttgaat
aaaagcatttcatacttgaaagaagccagctaagtaactcatgctgcttt
tcatagtcttttacacaagattcctttatcaacatttttagtttctgagg
acttgaaaactgaaaactgtccatttcatgtgtcatgaaatgtcaccacc
agaactctccttctttctctttttatctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114500434_114501425
seq2: B6Ng01-090L06.b_43_1044 (reverse)

seq1  CTTTAGATAT-TTGGCTTGGGGTGGAATACTGG-TTCAGAATCTGCCAGA  48
      |||||||||| |||  |||||| |||||||||| ||||| || | |  ||
seq2  CTTTAGATATATTGAATTGGGGGGGAATACTGGTTTCAGTATTTCCATGA  50

seq1  TTCTAGATTCAATTCCTAATATGAGAAAATTTTTAAAAAATGGCAACTGT  98
      || ||| |||||||||||||||||| ||| |||||||||||||||| |||
seq2  TTTTAGTTTCAATTCCTAATATGAGGAAAATTTTAAAAAATGGCAAGTGT  100

seq1  TACATTTACAAGAGAAATTC-ACTATCATTTGCAAAATCAAC-ATCAATA  146
      |||||||||||||||||||| | ||||| ||||||||||||| |||| ||
seq2  TACATTTACAAGAGAAATTCAAATATCA-TTGCAAAATCAACAATCATTA  149

seq1  AACTGGACTCTAAAG-AAAAGTATTTGAGGTCA-AAATGTAGAACAATGG  194
      ||||||||||||||| ||||||||| ||||||| ||||||||||||||||
seq2  AACTGGACTCTAAAGAAAAAGTATTGGAGGTCACAAATGTAGAACAATGG  199

seq1  ACATGA-ATGTCAGCTATTGGAT-GGGTCACAGGGCCCTCAATGGAGGAG  242
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  ACATGACATGTCAGCTATTGGATGGGGTCACAGGGCCCTCAATGGAGGAG  249

seq1  CTAGAG-AAAATACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGG  291
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAAATACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGG  299

seq1  -AACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGC  340
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGC  349

seq1  ATATGTATC-AAAAGATGGCCTAGTTGGCCATCTCTGGAAAGAGAGGCCC  389
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATCAAAAAGATGGCCTAGTTGGCCATCTCTGGAAAGAGAGGCCC  399

seq1  ATTGGACTTGCAAACTTTATATGGCCCAGTACAGGAGAACGCCAGGGCCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACTTGCAAACTTTATATGGCCCAGTACAGGAGAACGCCAGGGCCA  449

seq1  AAAAGTGGGAGTGGGTGGGTAGTGGGGTCGGGGGGAGGGTATGGGGGACT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGGAGTGGGTGGGTAGTGGGGTCGGGGGGAGGGTATGGGGGACT  499

seq1  TTTTGGACAGCATTGGAAATGTAAATGAGAAAAATACCTAATTAAAAAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGACAGCATTGGAAATGTAAATGAGAAAAATACCTAATTAAAAAAA  549

seq1  ACAATTAAAAAATGTTGCAATAAACATTAATGTAAAGATATCTTTTACGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAAAAAATGTTGCAATAAACATTAATGTAAAGATATCTTTTACGG  599

seq1  CATTATGGTGTTCCCAAGTTGGAGCATTATGTACTTTTATAAAATATTTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGGTGTTCCCAAGTTGGAGCATTATGTACTTTTATAAAATATTTA  649

seq1  GTTACATGTTAAGAAGGAACTTTTTGTTTTGATGTTTGCTTTCTCTAAGG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATGTTAAGAAGGAACTTTTTGTTTTGATGTTTGCTTTCTCTAAGG  699

seq1  TCCTTCTCTTTCTGCATTTGAGACTCCTATTAAATTTTGACAGGAGTTTG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTTTCTGCATTTGAGACTCCTATTAAATTTTGACAGGAGTTTG  749

seq1  TTTTCACAAAGATTTTTTATAAATATTTACAGGGCTTAATAAATTAACCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAAAGATTTTTTATAAATATTTACAGGGCTTAATAAATTAACCA  799

seq1  TGCTAAGTATCTCATAAAAAAAAACTGCCCAATCTCATACTATTTTTATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTATCTCATAAAAAAAAACTGCCCAATCTCATACTATTTTTATG  849

seq1  TTTATATGTACATGTAACTTTTGGAAAACAAATTACTTGAAAATTCATTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGTACATGTAACTTTTGGAAAACAAATTACTTGAAAATTCATTA  899

seq1  TTAAACAAAAAAGCAGTTTTATAAAAATTTATACTATGAAGCTTCTGGGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAAAAAGCAGTTTTATAAAAATTTATACTATGAAGCTTCTGGGA  949

seq1  ATGTTGGTGGATCAGAAACTGACCCTGTGTAACCCAGCAAAGGAAAAGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGTGGATCAGAAACTGACCCTGTGTAACCCAGCAAAGGAAAAGAA  999

seq1  TTC  992
      |||
seq2  TTC  1002

seq1: chr1_114368879_114369963
seq2: B6Ng01-090L06.g_70_1152

seq1  GAATTCCATATGAGGAATTGTTCAATTTTTCTTGTGTTGCTGTCTACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGAGGAATTGTTCAATTTTTCTTGTGTTGCTGTCTACTAT  50

seq1  AATGCTAAATACTGGATGCCAAGGTCTCATTGCCCTCAGGGAAAAAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAAATACTGGATGCCAAGGTCTCATTGCCCTCAGGGAAAAAGGGG  100

seq1  GAAAAGAGACCCTTATATCAAGGATATATATATATATATATATATCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGACCCTTATATCAAGGATATATATATATATATATATATCCTTG  150

seq1  CTTCTTAACTTAAAATTGTTGTTTAAGTAATGATGCCTACAGTCTGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAACTTAAAATTGTTGTTTAAGTAATGATGCCTACAGTCTGTAGC  200

seq1  TGGGCACAACAGGGGTACTCACAGCTTCAGTTCCAGAGCAGAGGAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAACAGGGGTACTCACAGCTTCAGTTCCAGAGCAGAGGAGAGAA  250

seq1  AAAAGAGAGAGGACGATGCCATGGGGTAGATAGATCATGAGAACATGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGAGGACGATGCCATGGGGTAGATAGATCATGAGAACATGACC  300

seq1  ATGAGGCCTGAAAAGTTGAAGTAAGAAAGACCATGGCAGAACATGGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCCTGAAAAGTTGAAGTAAGAAAGACCATGGCAGAACATGGCCAA  350

seq1  TTATATCTCGGTGTTAATGACAGGAAGATGGACAAAATAAATAGATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTCGGTGTTAATGACAGGAAGATGGACAAAATAAATAGATGATT  400

seq1  GATATCTGCCCAGGTCTAATGGTATTAATGCTTTTATTTCAACAATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTGCCCAGGTCTAATGGTATTAATGCTTTTATTTCAACAATTTCA  450

seq1  GAACTAAATGATCAAAGGTATGGTAAAAATACTCACCAATATTTATGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAATGATCAAAGGTATGGTAAAAATACTCACCAATATTTATGACA  500

seq1  AAGAATAAGCAAACGTTTTAAGATAATTAGACAGAATCCATTTCGATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAGCAAACGTTTTAAGATAATTAGACAGAATCCATTTCGATGAC  550

seq1  AACCCCTGTCTCTTCTGTGATCAGTGTTAGGAGACACAGTGGAAATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTGTCTCTTCTGTGATCAGTGTTAGGAGACACAGTGGAAATTTCT  600

seq1  AAGTGGCACTTAAATCAAGTAAAAAAATTTTGAGACAAGAAAGAATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCACTTAAATCAAGTAAAAAAATTTTGAGACAAGAAAGAATTTAT  650

seq1  TATCTTGCTGTGCTGTGCATTCATAGTGAAGTGTAACATAGCCCTCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCTGTGCTGTGCATTCATAGTGAAGTGTAACATAGCCCTCTTTG  700

seq1  ACCAGTTATATAACTTTTCTTTTGCAAAATCCAGAATTTCAGTTTTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTATATAACTTTTCTTTTGCAAAATCCAGAATTTCAGTTTTAAGA  750

seq1  ATTATTTTTAGAAATGCAGTTTTCTAGTTTAAAAGCCAGGTGATAATTTA  800
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTAG-AATGCAGTTTTCTAGTTTAAAAGCCAGGTGATAATTTA  799

seq1  CGTAAACAAGGAGATTTATGTACAGAAATGAATGTAATAGAATTATTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAACAAGGAGATTTATGTACAGAAATGAATGTAATAGAATTATTCTA  849

seq1  GCCAGCTGAGATAACAAGTATGTATTGAGAGTAGAATTG-CTCAGTTGAA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCCAGCTGAGATAACAAGTATGTATTGAGAGTAGAATTGCCTCAGTTGAA  899

seq1  TAAAAGCATTTCATACTTGAAAGAGCCAAGCTAAGTAACTCATGCTGCTT  949
      ||||||||||||||||||||||||  | ||||||||||||||||||||||
seq2  TAAAAGCATTTCATACTTGAAAGAAGCCAGCTAAGTAACTCATGCTGCTT  949

seq1  TTCATAGTCTTTTAACACAAAGATTCCTTTATCAACATTTTTAGTTTCTG  999
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  TTCATAGTCTTTT-ACAC-AAGATTCCTTTATCAACATTTTTAGTTTCTG  997

seq1  AAGGACTTGAAAACTGAAAACTGTCCATTTCAATGTGTCAATGAAATGTT  1049
       |||||||||||||||||||||||||||||| ||||||| |||||||| |
seq2  -AGGACTTGAAAACTGAAAACTGTCCATTTC-ATGTGTC-ATGAAATG-T  1043

seq1  CACACACAGAACTCTCTCTCTTTCTC----TCTCTCTCTC  1085
      |||   ||||||||||  ||||||||    | ||||||||
seq2  CACCACCAGAACTCTCCTTCTTTCTCTTTTTATCTCTCTC  1083