BAC Information

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BAC

Clone NameB6Ng01-090O11
Chromosome1 (Build37)
Map Location 112,494,494 - 112,638,686
singlet/doubletdoublet
Overlap geneEG626652
Upstream geneEG666508, Cdh7, LOC100041429
Downstream geneCdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090O11.bB6Ng01-090O11.g
ACCDH903081DH903082
length1,249888
definitionDH903081|Mus musculus domesticus DNA, BAC clone: B6Ng01-090O11, 5' end.DH903082|Mus musculus domesticus DNA, BAC clone: B6Ng01-090O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,494,494 - 112,495,770)(112,638,130 - 112,638,686)
sequence
gaattccaggtccaggaagcaggagtgggtatgttcgggagcagggagag
ggcagagtggatatgggacttttggagaggaaactaggaaagaggataac
atttgaaatgtaaataaagaaaatatctaataaaaataaaataaaaataa
aactcaggaagctaatatatcaacaaaatgcaaagaagcaaataaatatc
ataagattaaccaagatataaagtagtgtacaggtgcaacaaagattatg
agtatgttatatatacaagtgtatacataaaattatattgatttaaatat
ccaatttttaacaagattcattattcaggacagaattagcattcagttat
atgaagtaatataaaaattggccagatatactgaagacatttttatacat
tctgaaaattcagtgatacattaatgcaataattcaagaactagttttta
ctaccaatgattaaaatgtgtacaaaattaggacttagaagactccataa
agatgtttctattccttccttagttgaatatacaagatgatgtatctaaa
atgtagttaatctaggttgaattttctaaaatttcaagaacctttcaaag
cattcctaggtgctatatagatcagtaatctgtatggaaattcagtgtca
gtgatggaaacatgtatatccttacataagagataatggtaaccacattg
ccttaggcactgtaataggttttatacttggcacaacttgatgatagtta
tgcacaaccttttcattttcttttgtgtcctccatcattctggaatttaa
ttttaaaataaattcttaatcataagttatcaaatttttatatttcttgg
cagttattctagctctgggctggaattcaaagattcattccttaacagta
agagaaatgtttcaaaagcactgtcatacatgtcaaataactcttacatt
tgtctccactgttcttatgcaaagtggcagatgatgttcttatagttcta
aataccacacattaaaattctcattacattgttcctaatctagatctcca
cgttatttggtagaatgttttgtaactataaactagatggcactgtggtc
agtacatgctatttttttcacaaatatgtagcaagctaatttaaataaaa
taatttctactagctggggctctccaatattccggagttaagcgaatcta
cttactccgtcacacgttatgtgtatcagggaaattgtcctttgaaaac
gaattcagtttggcaggtcctcagaaaactgaagttcatgcttttaaagt
tagacctaattattctctgaatttcctcagtgtcagtttctatatctccc
ctttcatttctgattttggaaacacttttgtgccttttagttagttgggt
taagtgttggcttatcgtttttgattttctcaaactagctcttgcattac
ctgattctttgtaaagttctctttgtttaatattaattgatttctgcact
gagttaagtatttccttctgtctttggttctaggccttccaggtgggtgt
gctgttaagttgctactctatctcttttttttcctttttcttttttcatt
atttatttatttctattttttattaatgtttttattggatgttttattta
tttacatttcaagtgctatcacctttcctgattcaccgccccccatatga
cccctatctcattccccctccttctgcttctatggggttgtaccaaggat
agccttgtcctttatttatttatttatttatttatttatttatttaaaaa
atttttaatgaaggtacttaatgctatggattttcctcctggcttttatt
gtatctcatgcattgggcatgttgtgccttaaatttttgggttttttttg
tttgtttgttttttttaattctagaatggctttgttttatctcttcattg
gacaatttgagctttagtaatcattcttttaataaggcggttgcccttgc
atttggtggataaatgtacagaattgagacatcatcctggtggaccaatt
tcttttatggtgtcttctacatcatactactgtttgcttctgttggtggt
agtactgtgtatgtaagtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112494494_112495770
seq2: B6Ng01-090O11.b_50_1298

seq1  GAATTCCAGGTCCAGGAAGCAGGAGTGGGTATGTTCGGGAGCAGGGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCCAGGAAGCAGGAGTGGGTATGTTCGGGAGCAGGGAGAG  50

seq1  GGCAGAGTGGATATGGGACTTTTGGAGAGGAAACTAGGAAAGAGGATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTGGATATGGGACTTTTGGAGAGGAAACTAGGAAAGAGGATAAC  100

seq1  ATTTGAAATGTAAATAAAGAAAATATCTAATAAAAATAAAATAAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATGTAAATAAAGAAAATATCTAATAAAAATAAAATAAAAATAA  150

seq1  AACTCAGGAAGCTAATATATCAACAAAATGCAAAGAAGCAAATAAATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGAAGCTAATATATCAACAAAATGCAAAGAAGCAAATAAATATC  200

seq1  ATAAGATTAACCAAGATATAAAGTAGTGTACAGGTGCAACAAAGATTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTAACCAAGATATAAAGTAGTGTACAGGTGCAACAAAGATTATG  250

seq1  AGTATGTTATATATACAAGTGTATACATAAAATTATATTGATTTAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTATATATACAAGTGTATACATAAAATTATATTGATTTAAATAT  300

seq1  CCAATTTTTAACAAGATTCATTATTCAGGACAGAATTAGCATTCAGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTTAACAAGATTCATTATTCAGGACAGAATTAGCATTCAGTTAT  350

seq1  ATGAAGTAATATAAAAATTGGCCAGATATACTGAAGACATTTTTATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTAATATAAAAATTGGCCAGATATACTGAAGACATTTTTATACAT  400

seq1  TCTGAAAATTCAGTGATACATTAATGCAATAATTCAAGAACTAGTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATTCAGTGATACATTAATGCAATAATTCAAGAACTAGTTTTTA  450

seq1  CTACCAATGATTAAAATGTGTACAAAATTAGGACTTAGAAGACTCCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAATGATTAAAATGTGTACAAAATTAGGACTTAGAAGACTCCATAA  500

seq1  AGATGTTTCTATTCCTTCCTTAGTTGAATATACAAGATGATGTATCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTCTATTCCTTCCTTAGTTGAATATACAAGATGATGTATCTAAA  550

seq1  ATGTAGTTAATCTAGGTTGAATTTTCTAAAATTTCAAGAACCTTTCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTAATCTAGGTTGAATTTTCTAAAATTTCAAGAACCTTTCAAAG  600

seq1  CATTCCTAGGTGCTATATAGATCAGTAATCTGTATGGAAATTCAGTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTAGGTGCTATATAGATCAGTAATCTGTATGGAAATTCAGTGTCA  650

seq1  GTGATGGAAACATGTATATCCTTACATAAGAGATAATGGTAACCACATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGAAACATGTATATCCTTACATAAGAGATAATGGTAACCACATTG  700

seq1  CCTTAGGCACTGTAATAGGTTTTATACTTGGCACAACTTGATGATAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGCACTGTAATAGGTTTTATACTTGGCACAACTTGATGATAGTTA  750

seq1  TGCACAACCTTTTCATTTTCTTTTGTGTCCTCCATCATTCTGGAATTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAACCTTTTCATTTTCTTTTGTGTCCTCCATCATTCTGGAATTTAA  800

seq1  TTTTAAAATAAATTCTTAATCATAAGTTATCAAATTTTTATATTTCTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATAAATTCTTAATCATAAGTTATCAAATTTTTATATTTCTTGG  850

seq1  CAGTTATTCTAGCTCTGGGCTGGAATTCAAAGATTCATTCCTTAACAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTCTAGCTCTGGGCTGGAATTCAAAGATTCATTCCTTAACAGTA  900

seq1  AGAGAAATGTTTCAAAAGCACTGTCATACATGTCAAATAACTCTTACATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATGTTTCAAAAGCACTGTCATACATGTCAAATAACTCTTACATT  950

seq1  TGTCTCCACTGTTCTTATGCAAAAGTGGCAGATGATGTTCTTATAGTTCT  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTCTCCACTGTTCTTATGC-AAAGTGGCAGATGATGTTCTTATAGTTCT  999

seq1  AAATACCAACACATTAAAATTCTCATTACAATTGTTCCTAATCTAGAATC  1050
      ||||||| ||||||||||||||||||||| |||||||||||||||| |||
seq2  AAATACC-ACACATTAAAATTCTCATTAC-ATTGTTCCTAATCTAG-ATC  1046

seq1  TCAACGTTATTTGGTAG-ATG-TTTGTAACTATAAAACTAAGATGGCACT  1098
      || |||||||||||||| ||| ||||||||||| ||||| ||||||||||
seq2  TCCACGTTATTTGGTAGAATGTTTTGTAACTAT-AAACT-AGATGGCACT  1094

seq1  GT-GTCAGTAACATTGCTA-TTTTTTCACAAATTATGTAGCTATGCTTAA  1146
      || |||||| ||| ||||| |||||||||||| |||||||| | || |||
seq2  GTGGTCAGT-ACA-TGCTATTTTTTTCACAAA-TATGTAGC-AAGC-TAA  1139

seq1  TTTTAATATTAAATAATTTTCTACTAGGTCTGTGGTCTCTCCAAATTATT  1196
      ||| ||||  |||||| ||||||||||  ||| || ||||||||  ||||
seq2  TTTAAATA--AAATAA-TTTCTACTAG--CTG-GGGCTCTCCAA--TATT  1181

seq1  CAGTAGTATAAAAAGCAGAATATCTACTTTAACTTCGGTCACACACTGTA  1246
      | | |||     |||| ||  ||||||||  ||| ||    |||||  ||
seq2  CCGGAGT----TAAGC-GA--ATCTACTT--ACTCCG---TCACACGTTA  1219

seq1  TGTGTATCAAGTGAAATTTTGCTTTGAAAAC  1277
      |||||||| || |||||| | ||||||||||
seq2  TGTGTATC-AGGGAAATTGTCCTTTGAAAAC  1249

seq1: chr1_112638130_112638686
seq2: B6Ng01-090O11.g_400_956 (reverse)

seq1  ACACACACACACACACACACACTTACATACACAGTACTACCACCAACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACTTACATACACAGTACTACCACCAACAGA  50

seq1  AGCAAACAGTAGTATGATGTAGAAGACACCATAAAAGAAATTGGTCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAGTAGTATGATGTAGAAGACACCATAAAAGAAATTGGTCCACC  100

seq1  AGGATGATGTCTCAATTCTGTACATTTATCCACCAAATGCAAGGGCAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATGTCTCAATTCTGTACATTTATCCACCAAATGCAAGGGCAACC  150

seq1  GCCTTATTAAAAGAATGATTACTAAAGCTCAAATTGTCCAATGAAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATTAAAAGAATGATTACTAAAGCTCAAATTGTCCAATGAAGAGAT  200

seq1  AAAACAAAGCCATTCTAGAATTAAAAAAAACAAACAAACAAAAAAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGCCATTCTAGAATTAAAAAAAACAAACAAACAAAAAAAACCC  250

seq1  AAAAATTTAAGGCACAACATGCCCAATGCATGAGATACAATAAAAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAAGGCACAACATGCCCAATGCATGAGATACAATAAAAGCCAG  300

seq1  GAGGAAAATCCATAGCATTAAGTACCTTCATTAAAAATTTTTTAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATCCATAGCATTAAGTACCTTCATTAAAAATTTTTTAAATAAA  350

seq1  TAAATAAATAAATAAATAAATAAATAAAGGACAAGGCTATCCTTGGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAAATAAAGGACAAGGCTATCCTTGGTACA  400

seq1  ACCCCATAGAAGCAGAAGGAGGGGGAATGAGATAGGGGTCATATGGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATAGAAGCAGAAGGAGGGGGAATGAGATAGGGGTCATATGGGGGG  450

seq1  CGGTGAATCAGGAAAGGTGATAGCACTTGAAATGTAAATAAATAAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAATCAGGAAAGGTGATAGCACTTGAAATGTAAATAAATAAAACAT  500

seq1  CCAATAAAAACATTAATAAAAAATAGAAATAAATAAATAATGAAAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAAACATTAATAAAAAATAGAAATAAATAAATAATGAAAAAAGA  550

seq1  AAAAGGA  557
      |||||||
seq2  AAAAGGA  557