BAC Information

Click to search

BAC

Clone NameB6Ng01-090P18
Chromosome1 (Build37)
Map Location 165,357,899 - 165,467,112
singlet/doubletdoublet
Overlap genenone
Upstream geneDnm3, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
Downstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090P18.bB6Ng01-090P18.g
ACCDH903139DH903140
length1,2541,183
definitionDH903139|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P18, 5' end.DH903140|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,465,866 - 165,467,112)(165,357,899 - 165,359,085)
sequence
gaattcaggcacagacggtgcaaaagttttgtttcctgcagaaaaatgtc
acaagtaaaattcaaagaaagaaaaatgaattgttgcattttaaagtaag
agtctccataagtcgagaatgaaactgaagctaaggaattaaaatatgta
tcaggtcattgacaaaagaagatgttagccatttattttataagacacat
gttgtcaatggggcagaagagaagtttattcaacattactgaaaaataat
catagtagaacaatgaaatgactttaatttctgccaacttgtggattttc
gacaaatgctcacagtagcacatcacattcatgttggctcaactttgaga
agaatcatcagggaggggagcttctctctaaagctgtaaaagtgtctctg
tctttaaagtaagcccagctcatttccagacgagtgctgttcttgctcgt
gtctatcttcttggaggctgcactttacatcgatacacacagatgacagt
cttatagcccaactgtagaatgagtgagtgaggtatgattcggcacatgg
cacatggtaagacagtttattgtagtaccatagttacttctgcattggtg
tccatggactcgcataacagggtaagcagcatgtttcagagatatgtagc
actgtgatcttatctatgctaaagtatctgggtagagaaggcatttgaaa
tttgacgtgtaaagcattcactgccattccacatcaggtggaactgtaag
tatttatcttgcttggtgatcagcctaatcatttttttttccttattaag
tatatgtcagaaagacatatcaagaaaaagacatcaacattaatttttag
atataattcaacagacactatctaaaaagatcaaaggaaatagagagcct
aaaacttatcgtctttaaagcatttttttcctctagaagtagcttcttgc
atattttcctgtggacacaaactttttcacgcacattatttatgagtgac
ttggggttataatgactttcatgttcctctaagggttcatacggattgct
tccagtcaaaacgtcttccaatcacctaattatgaaataaataaaaccac
cctaaagtgaggtcttagaaaagggagaggggtgatgtcatggaaaaatt
tgtatggattggataaatctccgtgggccaagttagaccccttggaatcc
actcactgcttgcctcctcactaaggcaggaaatcatactcaaaaaagaa
tttt
gaattctggaggggaggatggccacagcttccataaacaatataaatgtt
tcaattccctcccgtggttttctagcttcttttgagctgtctttggagga
gccgagctgtgttgtctagtgccatacctgaagagtaggtcttctctgta
ggtttcatgagtggggttcaatttgggtacatatatagagaatctctatc
catggcagaaaacatgggctttattttcattattgtagtactaatactgg
accctgaggttttgtacataagtgctttgagaccaagctacaccccactc
caatattgttcgtgcatcctttatttatggggatttaacatgtttagtaa
gccataaagcacttctgttattataaggctgcatacagcctccactgtta
tctggcatataccatctaccatccatctggccatgatggcatctttattt
gaatgacatcattaactaagttctacaattagcaacatccaaaatcttca
gcaatcatctacagcctttgtgtgttcttatactttgaagagcagtggtt
gtagtgatataaagttgagaatcctttgattgtttttttattatttgggg
atcataactgcaccttgttattaatgacaaattctcttgaactgatcaga
aatccagttgcagctaagacctcaagacttaccatttatgtgggctttca
gggttatgcagattattttgaattggtctatattgcctaaagaaaagtgt
tttttctcttttgtgtgatttttttaaaaaacaacaaatatattataatg
aggagctacttgaagaaatgagtacaaaaacattgagcaaatggccaagg
gatgcaaagaaacaaaaacatagtggatgacttcatagcagaagacacca
gatccttgatgtaagtagtaattactttattcttatagaaaagctcaata
catcagtacagacacacatatgtaaaaggtcaaaggaagactgtgtcaaa
aaaaatcttccattatgcttatgtaaatgacaaagagaaagacagcagaa
ggcatggttcactcatgcctgtaatccagccactcaacatagtctcttca
tgcagtctggttaggagaaagggagactgttatcaggcaaccgacaaacc
acaccttagacaatgtactggcctagtttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165465866_165467112
seq2: B6Ng01-090P18.b_49_1302 (reverse)

seq1  AAAATTCTCTTTTTTGTATTGATTTCCTTGGCTTTATGTAGGAGGCAAGC  50
      |||||||| ||||  ||| |||||||||  || |||   |||||||||||
seq2  AAAATTCTTTTTTGAGTA-TGATTTCCT--GCCTTAGTGAGGAGGCAAGC  47

seq1  AGTGAGATGGAATCCAA-GAGTCTGACATTG-CCACAGAGATTTATCCAA  98
      |||||| |||| ||||| | |||| || | | |||| |||||||||||||
seq2  AGTGAG-TGGATTCCAAGGGGTCTAACTTGGCCCACGGAGATTTATCCAA  96

seq1  T-CATACAAATTCTTCATTGACATCA--CCTCTCCC-TCTCTAAGACCTC  144
      | |||||||||| |||  ||||||||  |||||||| | |||||||||||
seq2  TCCATACAAATTTTTCCATGACATCACCCCTCTCCCTTTTCTAAGACCTC  146

seq1  ACTTTAGAGTGGTTT--ATTATTTCAT-ATTA-GTGATTGGAAGACGTTT  190
      ||||||| |||||||   ||||||||| |||| |||||||||||||| ||
seq2  ACTTTAGGGTGGTTTTATTTATTTCATAATTAGGTGATTGGAAGACG-TT  195

seq1  TTGACTGGAAGCAAACCGTATGAACCCTTAGAGGAACATGAAAGTCATTA  240
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGACTGGAAGCAATCCGTATGAACCCTTAGAGGAACATGAAAGTCATTA  245

seq1  TAA-CCCAAGTCACTCATAAATAATGTGCGTGAAAAAGTTTGTGTCCACA  289
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCAAGTCACTCATAAATAATGTGCGTGAAAAAGTTTGTGTCCACA  295

seq1  GGAAAATATGCAAGAAGCTACTTCTAGAGGAAAAAAATGCTTTAAAGACG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATATGCAAGAAGCTACTTCTAGAGGAAAAAAATGCTTTAAAGACG  345

seq1  ATAAGTTTTAGGCTCTCTATTTCCTTTGATCTTTTTAGATAGTGTCTGTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTTAGGCTCTCTATTTCCTTTGATCTTTTTAGATAGTGTCTGTT  395

seq1  GAATTATATCTAAAAATTAATGTTGATGTCTTTTTCTTGATATGTCTTTC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATATCTAAAAATTAATGTTGATGTCTTTTTCTTGATATGTCTTTC  445

seq1  TGACATATACTTAATAAGG-AAAAAAAATGATTAGGCTGATCACCAAGCA  488
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGACATATACTTAATAAGGAAAAAAAAATGATTAGGCTGATCACCAAGCA  495

seq1  AGATAAATACTTACAGTTCCACCTGATGTGGAATGGCAGTGAATGCTTTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATACTTACAGTTCCACCTGATGTGGAATGGCAGTGAATGCTTTA  545

seq1  CACGTCAAATTTCAAATGCCTTCTCTACCCAGATACTTTAGCATAGATAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCAAATTTCAAATGCCTTCTCTACCCAGATACTTTAGCATAGATAA  595

seq1  GATCACAGTGCTACATATCTCTGAAACATGCTGCTTACCCTGTTATGCGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGTGCTACATATCTCTGAAACATGCTGCTTACCCTGTTATGCGA  645

seq1  GTCCATGGACACCAATGCAGAAGTAACTATGGTACTACAATAAACTGTCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGACACCAATGCAGAAGTAACTATGGTACTACAATAAACTGTCT  695

seq1  TACCATGTGCCATGTGCCGAATCATACCTCACTCACTCATTCTACAGTTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTGCCATGTGCCGAATCATACCTCACTCACTCATTCTACAGTTG  745

seq1  GGCTATAAGACTGTCATCTGTGTGTATCGATGTAAAGTGCAGCCTCCAAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAAGACTGTCATCTGTGTGTATCGATGTAAAGTGCAGCCTCCAAG  795

seq1  AAGATAGACACGAGCAAGAACAGCACTCGTCTGGAAATGAGCTGGGCTTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGACACGAGCAAGAACAGCACTCGTCTGGAAATGAGCTGGGCTTA  845

seq1  CTTTAAAGACAGAGACACTTTTACAGCTTTAGAGAGAAGCTCCCCTCCCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGACAGAGACACTTTTACAGCTTTAGAGAGAAGCTCCCCTCCCT  895

seq1  GATGATTCTTCTCAAAGTTGAGCCAACATGAATGTGATGTGCTACTGTGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTCTTCTCAAAGTTGAGCCAACATGAATGTGATGTGCTACTGTGA  945

seq1  GCATTTGTCGAAAATCCACAAGTTGGCAGAAATTAAAGTCATTTCATTGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTCGAAAATCCACAAGTTGGCAGAAATTAAAGTCATTTCATTGT  995

seq1  TCTACTATGATTATTTTTCAGTAATGTTGAATAAACTTCTCTTCTGCCCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTATGATTATTTTTCAGTAATGTTGAATAAACTTCTCTTCTGCCCC  1045

seq1  ATTGACAACATGTGTCTTATAAAATAAATGGCTAACATCTTCTTTTGTCA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAACATGTGTCTTATAAAATAAATGGCTAACATCTTCTTTTGTCA  1095

seq1  ATGACCTGATACATATTTTAATTCCTTAGCTTCAGTTTCATTCTCGACTT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGATACATATTTTAATTCCTTAGCTTCAGTTTCATTCTCGACTT  1145

seq1  ATGGAGACTCTTACTTTAAAATGCAACAATTCATTTTTCTTTCTTTGAAT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACTCTTACTTTAAAATGCAACAATTCATTTTTCTTTCTTTGAAT  1195

seq1  TTTACTTGTGACATTTTTCTGCAGGAAACAAAACTTTTGCACCGTCTGTG  1238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGTGACATTTTTCTGCAGGAAACAAAACTTTTGCACCGTCTGTG  1245

seq1  CCTGAATTC  1247
      |||||||||
seq2  CCTGAATTC  1254

seq1: chr1_165357899_165359085
seq2: B6Ng01-090P18.g_66_1248

seq1  GAATTCTGGAGGGGAGGATGGCCACAGCTTCCATAAACAATATAAATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGGGGAGGATGGCCACAGCTTCCATAAACAATATAAATGTT  50

seq1  TCAATTCCCTCCCGTGGTTTTCTAGCTTCTTTTGAGCTGTCTTTGGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCTCCCGTGGTTTTCTAGCTTCTTTTGAGCTGTCTTTGGAGGA  100

seq1  GCCGAGCTGTGTTGTCTAGTGCCATACCTGAAGAGTAGGTCTTCTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGCTGTGTTGTCTAGTGCCATACCTGAAGAGTAGGTCTTCTCTGTA  150

seq1  GGTTTCATGAGTGGGGTTCAATTTGGGTACATATATAGAGAATCTCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATGAGTGGGGTTCAATTTGGGTACATATATAGAGAATCTCTATC  200

seq1  CATGGCAGAAAACATGGGCTTTATTTTCATTATTGTAGTACTAATACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGAAAACATGGGCTTTATTTTCATTATTGTAGTACTAATACTGG  250

seq1  ACCCTGAGGTTTTGTACATAAGTGCTTTGAGACCAAGCTACACCCCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGGTTTTGTACATAAGTGCTTTGAGACCAAGCTACACCCCACTC  300

seq1  CAATATTGTTCGTGCATCCTTTATTTATGGGGATTTAACATGTTTAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTGTTCGTGCATCCTTTATTTATGGGGATTTAACATGTTTAGTAA  350

seq1  GCCATAAAGCACTTCTGTTATTATAAGGCTGCATACAGCCTCCACTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAAGCACTTCTGTTATTATAAGGCTGCATACAGCCTCCACTGTTA  400

seq1  TCTGGCATATACCATCTACCATCCATCTGGCCATGATGGCATCTTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATATACCATCTACCATCCATCTGGCCATGATGGCATCTTTATTT  450

seq1  GAATGACATCATTAACTAAGTTCTACAATTAGCAACATCCAAAATCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACATCATTAACTAAGTTCTACAATTAGCAACATCCAAAATCTTCA  500

seq1  GCAATCATCTACAGCCTTTGTGTGTTCTTATACTTTGAAGAGCAGTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATCTACAGCCTTTGTGTGTTCTTATACTTTGAAGAGCAGTGGTT  550

seq1  GTAGTGATATAAAGTTGAGAATCCTTTGATTGTTTTTTTATTATTTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATATAAAGTTGAGAATCCTTTGATTGTTTTTTTATTATTTGGGG  600

seq1  ATCATAACTGCACCTTGTTATTAATGACAAATTCTCTTGAACTGATCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAACTGCACCTTGTTATTAATGACAAATTCTCTTGAACTGATCAGA  650

seq1  AATCCAGTTGCAGCTAAGACCTCAAGACTTACCATTTATGTGGGCTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGTTGCAGCTAAGACCTCAAGACTTACCATTTATGTGGGCTTTCA  700

seq1  GGGTTATGCAGATTATTTTGAATTGGTCTATATTGCCTAAAGAAAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATGCAGATTATTTTGAATTGGTCTATATTGCCTAAAGAAAAGTGT  750

seq1  TTTTTCTCTTTTGTGTGATTTTTTTAAAAAACAACAAATATATTATAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTTTTGTGTGATTTTTTTAAAAAACAACAAATATATTATAATG  800

seq1  AGGAGCTACTTGAAGAAATGAGTACAAAAACATTGAGCAAATGGCCAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTACTTGAAGAAATGAGTACAAAAACATTGAGCAAATGGCCAAGG  850

seq1  GATGCAAAGAAACAAAAACATAGTGGATGACTTCATAGCAGAAGACACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAGAAACAAAAACATAGTGGATGACTTCATAGCAGAAGACACCA  900

seq1  GATCCTTGATGTAAGTAGTAATTACTTTATTCTTATAGAAAAGCTCAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTGATGTAAGTAGTAATTACTTTATTCTTATAGAAAAGCTCAATA  950

seq1  CATCAGTACAAGACACACATATGTAAAAGGTCAAAGGAAGACTGTGTCAA  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAC-AGACACACATATGTAAAAGGTCAAAGGAAGACTGTGTCAA  999

seq1  AAAAAATC-TCCA-TATGCTTATGTAAAATGACAAAGAGAAAGACAGCAG  1048
      |||||||| |||| ||||||||||| ||||||||||||||||||||||||
seq2  AAAAAATCTTCCATTATGCTTATGT-AAATGACAAAGAGAAAGACAGCAG  1048

seq1  AAGGCATGG-TCACTCATGCCTGTAATCCAG-CACTCAACATAAGTCTCT  1096
      ||||||||| ||||||||||||||||||||| |||||||||| |||||||
seq2  AAGGCATGGTTCACTCATGCCTGTAATCCAGCCACTCAACAT-AGTCTCT  1097

seq1  TCATTGCAAGTTCTGGGTTAGAGAGAGGAAGACCTTGTATCAAGCAAACA  1146
      ||| ||||   ||||| |  |||| ||| ||| ||  ||||| || ||| 
seq2  TCA-TGCA--GTCTGGTTAGGAGAAAGGGAGA-CTGTTATCAGGC-AACC  1142

seq1  GACAAACAAACACTAAGACAATGTACTGG-CTAGTTTTGTGT  1187
      ||||||| |   || |||||||||||||| |||| |||||||
seq2  GACAAACCACACCTTAGACAATGTACTGGCCTAG-TTTGTGT  1183