BAC Information

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BAC

Clone NameB6Ng01-090P24
Chromosome1 (Build37)
Map Location 169,096,739 - 169,298,145
singlet/doubletdoublet
Overlap geneUck2, LOC100039844, Tmco1, Aldh9a1
Upstream geneMael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik
Downstream geneMgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090P24.bB6Ng01-090P24.g
ACCDH903151DH903152
length5201,035
definitionDH903151|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P24, 5' end.DH903152|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,096,739 - 169,097,264)(169,297,131 - 169,298,145)
sequence
accaaaataccaacattatgccttacatagctagagaaagccatcctcaa
gtttctatggaggcatcaagggtctcgaacaaagaaaccctaagggggga
aaacatgctgaagacatcacaatatctgacttaaaaccatgctatcatgt
caggaggttctctatgagttcaaggccagcctggtctacataaagagttc
tacaccagccatgactacatagtgacactccacctttaaaaacaattaca
acatgcatgtacatgtgtgtgtgtgttcatttctatactgaatgcatgca
atagaagtttatccacccataaagacaaatgaaatgacatgttaacattt
gcatctgcaagtcatcttgtagttgaaataaatcagggtcggaaagacga
ctgctgcctgttttctctcattggtggagcctagattttataaagatgca
tgaaacgattccatgtgtcatgaatgtagaagcaagaatgggaaatgagt
gggaatagtggggagggaga
gaattcactctgtagaccaggctggctctaaactcagacatccacctgtc
tctgcctcccaagtgccgggattaaaggcacataccagtactgcccagct
ccaaataaaagctttaagaatttgttttttagttgtcaatgaacaaagaa
tgtatatgtactgattcaccaggaacccaggaaggaaggcctgctttaaa
gcaaactagaaagctgccattgttggtgggacaaatgtgtaggagcagag
ctgtggcctgcctatgtctgaagagtgcgcttctggggtctacatatttc
tcaggggctgggacaacaggttacctggctaccatctgaaaggcacttgt
gcacattttcaaactgggaaggtgactgtaagacagaggacaacactgac
ccgttatcacactaatgacccaaagcctggatgtaagaagctattcagtt
atgctgcctgtcaaggcagtcaactcattccacagcttggctacgccagc
aggcttccctgggtttcaaaaggctgactccacgtcgcccatctccacac
acaccgtcttcagctgagagtagtactcaatcgtcacacggccattctct
ctgccaaatcctgaaaagacacggggtcagagtgagctggccgtacagtg
gtctggagtcccagtgcatcaaaggcagactctgctggtcagggtgggga
gcaagtcctcagagcagatacttcttgcggagctgggccagtgagtgtta
ggacacttaccagccgagtacctgctttcagtgcctgccactctgtgtga
acatctgaaaagtgttcagtctttttgaaggaagcgtgctaacagcaggt
gcaatagcttcagttggtagcggtgctttgctaactaagcacaaaagctc
tggggttcaagtccttcggcacccattaggctggggcataatctcaattt
cctataaccccagcactttcacacagaatggggcaaaaggaacttcttgc
ctccactattataatgagtttcaaggctcaaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_169096739_169097264
seq2: B6Ng01-090P24.b_49_574

seq1  GAATTCACCAAAATACCAACATTATGCCTTACATAGCTAGAGAAAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAAATACCAACATTATGCCTTACATAGCTAGAGAAAGCCAT  50

seq1  CCTCAAGTTTCTATGGAGGCATCAAGGGTCTCGAACAAAGAAACCCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGTTTCTATGGAGGCATCAAGGGTCTCGAACAAAGAAACCCTAAG  100

seq1  GGGGGAAAACATGCTGAAGACATCACAATATCTGACTTAAAACCATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAAACATGCTGAAGACATCACAATATCTGACTTAAAACCATGCTA  150

seq1  TCATGTCAGGAGGTTCTCTATGAGTTCAAGGCCAGCCTGGTCTACATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCAGGAGGTTCTCTATGAGTTCAAGGCCAGCCTGGTCTACATAAA  200

seq1  GAGTTCTACACCAGCCATGACTACATAGTGACACTCCACCTTTAAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTACACCAGCCATGACTACATAGTGACACTCCACCTTTAAAAACA  250

seq1  ATTACAACATGCATGTACATGTGTGTGTGTGTTCATTTCTATACTGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAACATGCATGTACATGTGTGTGTGTGTTCATTTCTATACTGAATG  300

seq1  CATGCAATAGAAGTTTATCCACCCATAAAGACAAATGAAATGACATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATAGAAGTTTATCCACCCATAAAGACAAATGAAATGACATGTTA  350

seq1  ACATTTGCATCTGCAAGTCATCTTGTAGTTGAAATAAATCAGGGTCGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCATCTGCAAGTCATCTTGTAGTTGAAATAAATCAGGGTCGGAA  400

seq1  AGACGACTGCTGCCTGTTTTCTCTCATTGGTGGAGCCTAGATTTTATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGACTGCTGCCTGTTTTCTCTCATTGGTGGAGCCTAGATTTTATAAA  450

seq1  GATGCATGAAACGATTCCATGTGTCATGAATGTAGAAGCAAGAATGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATGAAACGATTCCATGTGTCATGAATGTAGAAGCAAGAATGGGAA  500

seq1  ATGAGTGGGAATAGTGGGGAGGGAGA  526
      ||||||||||||||||||||||||||
seq2  ATGAGTGGGAATAGTGGGGAGGGAGA  526

seq1: chr1_169297131_169298145
seq2: B6Ng01-090P24.g_69_1103 (reverse)

seq1  AGGG-TGAGCCTTG-AACTCACTAT-ATAGTGGA-GCA--GAGTTCCTTT  44
      |||| ||||||||| |||||| ||| |||||||| |||   |||||||||
seq2  AGGGTTGAGCCTTGAAACTCATTATAATAGTGGAGGCAAGAAGTTCCTTT  50

seq1  TGCCCCA-TCTGTGTG-AAGTGCTGGGGTTATAGGAATGTGAGACTATG-  91
      ||||||| |||||||| ||||||||||||||||||||  ||||| |||| 
seq2  TGCCCCATTCTGTGTGAAAGTGCTGGGGTTATAGGAAATTGAGATTATGC  100

seq1  CCCAGGCTAAT-GGTGCCG-AGGAC-TGAA-CCCAGGGC-TTTGTGCTT-  135
      ||||| ||||| ||||||| ||||| |||| ||||| || ||||||||| 
seq2  CCCAGCCTAATGGGTGCCGAAGGACTTGAACCCCAGAGCTTTTGTGCTTA  150

seq1  GGTAGGCAAGCA-CGCTACCAACTG-AGCTATTGCACCTGCTGTTAGCAC  183
      | |||  ||||| |||||||||||| ||||||||||||||||||||||||
seq2  GTTAGCAAAGCACCGCTACCAACTGAAGCTATTGCACCTGCTGTTAGCAC  200

seq1  GCTTCCTTC-AAAAGACTGAACACTTTTCAGATGTTCACACAGAGTGGCA  232
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTCAAAAAGACTGAACACTTTTCAGATGTTCACACAGAGTGGCA  250

seq1  GGCACTG-AAGCAGGTACTCGGCTGGTAAGTGTCCTAACACTCACTGGCC  281
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGAAAGCAGGTACTCGGCTGGTAAGTGTCCTAACACTCACTGGCC  300

seq1  CAGCTCCGC-AGAAGTATCTGCTCTGAGGACTTGCTCCCCACCCTGACCA  330
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCGCAAGAAGTATCTGCTCTGAGGACTTGCTCCCCACCCTGACCA  350

seq1  GCAGAGTCTGCCTTTGATGCACTGGGACTCCAGACCACTGTACGGCCAGC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCTGCCTTTGATGCACTGGGACTCCAGACCACTGTACGGCCAGC  400

seq1  TCACTCTGACCCCGTGTCTTTTCAGGATTTGGCAGAGAGAATGGCCGTGT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGACCCCGTGTCTTTTCAGGATTTGGCAGAGAGAATGGCCGTGT  450

seq1  GACGATTGAGTACTACTCTCAGCTGAAGACGGTGTGTGTGGAGATGGGCG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATTGAGTACTACTCTCAGCTGAAGACGGTGTGTGTGGAGATGGGCG  500

seq1  ACGTGGAGTCAGCCTTTTGAAACCCAGGGAAGCCTGCTGGCGTAGCCAAG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGAGTCAGCCTTTTGAAACCCAGGGAAGCCTGCTGGCGTAGCCAAG  550

seq1  CTGTGGAATGAGTTGACTGCCTTGACAGGCAGCATAACTGAATAGCTTCT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAATGAGTTGACTGCCTTGACAGGCAGCATAACTGAATAGCTTCT  600

seq1  TACATCCAGGCTTTGGGTCATTAGTGTGATAACGGGTCAGTGTTGTCCTC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCAGGCTTTGGGTCATTAGTGTGATAACGGGTCAGTGTTGTCCTC  650

seq1  TGTCTTACAGTCACCTTCCCAGTTTGAAAATGTGCACAAGTGCCTTTCAG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTACAGTCACCTTCCCAGTTTGAAAATGTGCACAAGTGCCTTTCAG  700

seq1  ATGGTAGCCAGGTAACCTGTTGTCCCAGCCCCTGAGAAATATGTAGACCC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGCCAGGTAACCTGTTGTCCCAGCCCCTGAGAAATATGTAGACCC  750

seq1  CAGAAGCGCACTCTTCAGACATAGGCAGGCCACAGCTCTGCTCCTACACA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCGCACTCTTCAGACATAGGCAGGCCACAGCTCTGCTCCTACACA  800

seq1  TTTGTCCCACCAACAATGGCAGCTTTCTAGTTTGCTTTAAAGCAGGCCTT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCACCAACAATGGCAGCTTTCTAGTTTGCTTTAAAGCAGGCCTT  850

seq1  CCTTCCTGGGTTCCTGGTGAATCAGTACATATACATTCTTTGTTCATTGA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGGGTTCCTGGTGAATCAGTACATATACATTCTTTGTTCATTGA  900

seq1  CAACTAAAAAACAAATTCTTAAAGCTTTTATTTGGAGCTGGGCAGTACTG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAAAAACAAATTCTTAAAGCTTTTATTTGGAGCTGGGCAGTACTG  950

seq1  GTATGTGCCTTTAATCCCGGCACTTGGGAGGCAGAGACAGGTGGATGTCT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCCTTTAATCCCGGCACTTGGGAGGCAGAGACAGGTGGATGTCT  1000

seq1  GAGTTTAGAGCCAGCCTGGTCTACAGAGTGAATTC  1015
      |||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGAGCCAGCCTGGTCTACAGAGTGAATTC  1035