BAC Information

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BAC

Clone NameB6Ng01-091A03
Chromosome1 (Build37)
Map Location 43,348,305 - 43,491,802
singlet/doubletdoublet
Overlap geneLOC100041644
Upstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644
Downstream geneNck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091A03.bB6Ng01-091A03.g
ACCDH903157DH903158
length1,1291,083
definitionDH903157|Mus musculus domesticus DNA, BAC clone: B6Ng01-091A03, 5' end.DH903158|Mus musculus domesticus DNA, BAC clone: B6Ng01-091A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,490,660 - 43,491,802)(43,348,305 - 43,349,419)
sequence
gaattcctagtctaaaacctgtgctaatttataaacagcagagtagcttc
aaagaagacagtgttgctacttaattcagattactgtgggagctgtcagc
acctatcaggttctccctatgggttcttagccagtgacattagctagact
gctcctttccttatatgctatggcctcgcatcccaagccttgcttaccat
tgttgaagcttctcttgtctataagagggtatctatctggactccagaaa
gcagtggcactaggaaagttaagcccccatgaacctaaaagcacacctat
agacaacagcctcagccttctcatgctctgtatagcaattctgaagaatg
ttctgtatctctgaaggttctccatcaggactgagcctcagctgccccta
gctgggccccctgggttgtattccttttttttctttacctattactcttc
ccctacttacttgatagtgaatgtagaacagataaggggaattgacaaca
tattgttgtgttgttctggaggctagaagtccaggtcaaggtatcatcca
tcaggcttggtccattcaaggcctctgttcttcccactgtgccctcatat
ggctcttcttgcgaacagacactcctggaatgtctttgagtttgtatatc
agtcctattgcagtagagttctgtctttaaggccaccgtttcatgcttgt
cacctatttaaaggctcagtctccaactacagtcccaccagaagttaggg
ctccagcaagcacatctgatcaagagtgtgactgagtatacagtgctttc
cagagaaccaccacgtgttcgagctttgatccttggccagcagagctagt
ttgggaagttacaggatgtcaagaactatgacctagctagtagagtgctg
gcttgggccttgaagtgataactcttcagttcctgccagagctgttccgt
caccttgtcaaagtgtgaatagctcagctacagggtttagcttgcttgcc
gtctggactgaccactcccagcttgtcatgctcctgctatgatagactat
atagccaaactgtgagcagaataactcttctcttttaatagtttctgtcc
tgtgaactgtgaaaccacagggacacact
gaattcctttggggtttccttggcctttagtttgtagagcatagatcctg
gccatttccttagaataagtcttttgtctgattatctatctatctatcaa
tcgatcaatctatctacctatctatgacctactggttctctttctctaca
catgcctgactaatttctgaatgcttcattgctcatgatgtgctctatct
gaggttacttatagacctcagtgtgtatctattagttagttttcttattg
ttgtgacaaaatataagacaagaagcaactcaagggagaaagggtttttt
gttttttgttttttttttttgcctcacagttgaagaaaatacagtttatc
attggtagagggaagtcatggtgaagactatggtagcagaaatgtatggc
taggagtctttgtattccagcagcctagaatgaaggaggagtcggaggag
gaggagtcggaggcggagacggggaggcggagacagggaggcggagtgag
agagaggcagagagaggaagacacacacatatacactgaggcagagacag
acagacagaccatgaaatatcagtcttgagtcaggaaggctctgaaccct
aagtcctgacccctagcagtccacgtactgcagagctcgctcaccttttg
aaagttccatggtctctaaaaaactgtgccatcaggagccagtgagaact
ttccccactcagacacgcatgtctccacttcaaaggaacctacaggtata
tttgagtttctgccaggaaaaaaaattcagaaggactgcacgatacaatc
ccttattacatggaccctaccctagagaggctgatttcactcaccccaga
tctgcgtcagcaccagggactctgcgctcctatggcttctgatgcaaagg
ccgaaaggagcctggtgcttcagcagggctgcattggaacctcagctgta
gatctgtaaagtcactgaacttctctagctccagattcccatgtcagaca
cagtcaaagatgccatggtgacatgactgggactgtcaacgctccagaaa
ataaaaagtagagcttactcagtacacttgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_43490660_43491802
seq2: B6Ng01-091A03.b_47_1175 (reverse)

seq1  AGTGTGTCCCTGGTGGTTTCACAG-TCACAGGGACAGAAACATATTAAAA  49
      ||||||||||| |||||||||||| ||||| |||||||||| ||||||||
seq2  AGTGTGTCCCT-GTGGTTTCACAGTTCACA-GGACAGAAAC-TATTAAAA  47

seq1  GAAGGAAGAGTTTATTCTGGCTCACAGGTTTGGCTATATAGTCTATCAAT  99
      ||  |||||| ||||||| ||||||| |||||||||||||||||||||  
seq2  GA--GAAGAG-TTATTCT-GCTCACA-GTTTGGCTATATAGTCTATCA--  90

seq1  AAGCAGGAAGGCATGAC-AGCTGGGAGTGGTCAGTCCAGGACGGCAAGCA  148
       |||||||  ||||||| |||||||||||||||||||| |||||||||||
seq2  TAGCAGGA--GCATGACAAGCTGGGAGTGGTCAGTCCA-GACGGCAAGCA  137

seq1  AGGCTAAACCCTGTAGCCTGAGCTATTCACACTTTGAC-AGGTGACGGAA  197
      | |||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  A-GCTAAACCCTGTAG-CTGAGCTATTCACACTTTGACAAGGTGACGGAA  185

seq1  CAGCTCTGGCAGGAACTGGAAGAGTTATCACCTTCAAGGCCCAAGCCAGC  247
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  CAGCTCTGGCAGGAACT-GAAGAGTTATCA-CTTCAAGGCCCAAGCCAGC  233

seq1  ACTCTACTAGCTAGGTCATAGTTCTTGACATCCTGTAACTTCCCAAACTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTAGCTAGGTCATAGTTCTTGACATCCTGTAACTTCCCAAACTA  283

seq1  GCTCTGCTGGCCAAGGATCAAAGCTCGAACACGTGGTGGTTCTCTGGAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTGGCCAAGGATCAAAGCTCGAACACGTGGTGGTTCTCTGGAAA  333

seq1  GCACTGTATACTCAGTCACACTCTTGATCAGATGTGCTTGCTGGAGCCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTATACTCAGTCACACTCTTGATCAGATGTGCTTGCTGGAGCCCT  383

seq1  AACTTCTGGTGGGACTGTAGTTGGAGACTGAGCCTTTAAATAGGTGACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGGTGGGACTGTAGTTGGAGACTGAGCCTTTAAATAGGTGACAA  433

seq1  GCATGAAACGGTGGCCTTAAAGACAGAACTCTACTGCAATAGGACTGATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAACGGTGGCCTTAAAGACAGAACTCTACTGCAATAGGACTGATA  483

seq1  TACAAACTCAAAGACATTCCAGGAGTGTCTGTTCGCAAGAAGAGCCATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTCAAAGACATTCCAGGAGTGTCTGTTCGCAAGAAGAGCCATAT  533

seq1  GAGGGCACAGTGGGAAGAACAGAGGCCTTGAATGGACCAAGCCTGATGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCACAGTGGGAAGAACAGAGGCCTTGAATGGACCAAGCCTGATGGA  583

seq1  TGATACCTTGACCTGGACTTCTAGCCTCCAGAACAACACAACAATATGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTTGACCTGGACTTCTAGCCTCCAGAACAACACAACAATATGTT  633

seq1  GTCAATTCCCCTTATCTGTTCTACATTCACTATCAAGTAAGTAGGGGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCCCCTTATCTGTTCTACATTCACTATCAAGTAAGTAGGGGAAG  683

seq1  AGTAATAGGTAAAGAAAAAAAAGGAATACAACCCAGGGGGCCCAGCTAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAGGTAAAGAAAAAAAAGGAATACAACCCAGGGGGCCCAGCTAGG  733

seq1  GGCAGCTGAGGCTCAGTCCTGATGGAGAACCTTCAGAGATACAGAACATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGAGGCTCAGTCCTGATGGAGAACCTTCAGAGATACAGAACATT  783

seq1  CTTCAGAATTGCTATACAGAGCATGAGAAGGCTGAGGCTGTTGTCTATAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAATTGCTATACAGAGCATGAGAAGGCTGAGGCTGTTGTCTATAG  833

seq1  GTGTGCTTTTAGGTTCATGGGGGCTTAACTTTCCTAGTGCCACTGCTTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTTTAGGTTCATGGGGGCTTAACTTTCCTAGTGCCACTGCTTTC  883

seq1  TGGAGTCCAGATAGATACCCTCTTATAGACAAGAGAAGCTTCAACAATGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCCAGATAGATACCCTCTTATAGACAAGAGAAGCTTCAACAATGG  933

seq1  TAAGCAAGGCTTGGGATGCGAGGCCATAGCATATAAGGAAAGGAGCAGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGGCTTGGGATGCGAGGCCATAGCATATAAGGAAAGGAGCAGTC  983

seq1  TAGCTAATGTCACTGGCTAAGAACCCATAGGGAGAACCTGATAGGTGCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAATGTCACTGGCTAAGAACCCATAGGGAGAACCTGATAGGTGCTG  1033

seq1  ACAGCTCCCACAGTAATCTGAATTAAGTAGCAACACTGTCTTCTTTGAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCCACAGTAATCTGAATTAAGTAGCAACACTGTCTTCTTTGAAG  1083

seq1  CTACTCTGCTGTTTATAAATTAGCACAGGTTTTAGACTAGGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGCTGTTTATAAATTAGCACAGGTTTTAGACTAGGAATTC  1129

seq1: chr1_43348305_43349419
seq2: B6Ng01-091A03.g_67_1149

seq1  GAATTCCTTTGGGGTTTCCTTGGCCTTTAGTTTGTAGAGCATAGATCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGGGGTTTCCTTGGCCTTTAGTTTGTAGAGCATAGATCCTG  50

seq1  GCCATTTCCTTAGAATAAGTCTTTTGTCTGATTATCTATCTATCTATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCCTTAGAATAAGTCTTTTGTCTGATTATCTATCTATCTATCAA  100

seq1  TCGATCAATCTATCTACCTATCTATGACCTACTGGTTCTCTTTCTCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATCAATCTATCTACCTATCTATGACCTACTGGTTCTCTTTCTCTACA  150

seq1  CATGCCTGACTAATTTCTGAATGCTTCATTGCTCATGATGTGCTCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGACTAATTTCTGAATGCTTCATTGCTCATGATGTGCTCTATCT  200

seq1  GAGGTTACTTATAGACCTCAGTGTGTATCTATTAGTTAGTTTTCTTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTACTTATAGACCTCAGTGTGTATCTATTAGTTAGTTTTCTTATTG  250

seq1  TTGTGACAAAATATAAGACAAGAAGCAACTCAAGGGAGAAAGGGTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACAAAATATAAGACAAGAAGCAACTCAAGGGAGAAAGGGTTTTTT  300

seq1  GTTTTTTGTTTTTTTTTTTTGCCTCACAGTTGAAGAAAATACAGTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTTTTTTTTGCCTCACAGTTGAAGAAAATACAGTTTATC  350

seq1  ATTGGTAGAGGGAAGTCATGGTGAAGACTATGGTAGCAGAAATGTATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAGAGGGAAGTCATGGTGAAGACTATGGTAGCAGAAATGTATGGC  400

seq1  TAGGAGTCTTTGTATTCCAGCAGCCTAGAATGAAGGAGGAGTCGGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTCTTTGTATTCCAGCAGCCTAGAATGAAGGAGGAGTCGGAGGAG  450

seq1  GAGGAGTCGGAGGCGGAGACGGGGAGGCGGAGACAGGGAGGCGGAGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTCGGAGGCGGAGACGGGGAGGCGGAGACAGGGAGGCGGAGTGAG  500

seq1  AGAGAGGCAGAGAGAGGAAGACACACACATATACACTGAGGCAGAGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCAGAGAGAGGAAGACACACACATATACACTGAGGCAGAGACAG  550

seq1  ACAGACAGACCATGAAATATCAGTCTTGAGTCAGGAAGGCTCTGAACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACCATGAAATATCAGTCTTGAGTCAGGAAGGCTCTGAACCCT  600

seq1  AAGTCCTGACCCCTAGCAGTCCACGTACTGCAGAGCTCGCTCACCTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGACCCCTAGCAGTCCACGTACTGCAGAGCTCGCTCACCTTTTG  650

seq1  AAAGTTCCATGGTCTCTAAAAAACTGTGCCATCAGGAGCCAGTGAGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCATGGTCTCTAAAAAACTGTGCCATCAGGAGCCAGTGAGAACT  700

seq1  TTCCCCACTCAGACACGCATGTCTCCACTTCAAAGGAACCTACAGGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACTCAGACACGCATGTCTCCACTTCAAAGGAACCTACAGGTATA  750

seq1  TTTGAGTTTCTGCCAGGAAAAAAAATTCAGAAGGACTGCACGATACAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTTCTGCCAGGAAAAAAAATTCAGAAGGACTGCACGATACAATC  800

seq1  CCTTATTACATGGACCCTACCCTAGAGAGGCTGATTTCACTCACCCCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTACATGGACCCTACCCTAGAGAGGCTGATTTCACTCACCCCAGA  850

seq1  TCTGCGTCAGCACCAGGGACTCTGCGCTCCTATGGCTTCTGATGCAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGTCAGCACCAGGGACTCTGCGCTCCTATGGCTTCTGATGCAAAGG  900

seq1  CCGAAAGGAGCCTGGTGCTTCAGGCAGGGCTGCATTGGAACCTCAGCTGT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCGAAAGGAGCCTGGTGCTTCA-GCAGGGCTGCATTGGAACCTCAGCTGT  949

seq1  AGAATCTTGGTAAAGTCACTGAACTTCTCTAAGCTCCCAGATTCCCCATT  1000
      || ||||  ||||||||||||||||||||| |||| ||||||||||   |
seq2  AG-ATCT--GTAAAGTCACTGAACTTCTCT-AGCT-CCAGATTCCC--AT  992

seq1  GTCAGGACACAGTCAAAAGAATGGCCCATGGTGAACAATGACTTGGGGAA  1050
      |||| ||||||||||||   |||  |||||||||   ||||||   || |
seq2  GTCA-GACACAGTCAAA--GATG--CCATGGTGA--CATGACT---GGGA  1032

seq1  CTGTCAGAGCGGCTCCAGGAAAAATAAAAAGGTAGAGAGCCTTTTACCTC  1100
      ||||||     |||||||  |||||||||| ||||||   |||    |||
seq2  CTGTCA---ACGCTCCAG--AAAATAAAAA-GTAGAG---CTT---ACTC  1070

seq1  AGGTACACTTTGCCC  1115
      | |||||| ||||||
seq2  A-GTACAC-TTGCCC  1083