BAC Information

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BAC

Clone NameB6Ng01-091C06
Chromosome6 (Build37)1 (Build37)
Map Location 85,609,621 - 85,610,13685,101,716 - 85,102,296
singlet/doubletsingletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091C06.bB6Ng01-091C06.g
ACCDH903253DH903254
length1,060562
definitionDH903253|Mus musculus domesticus DNA, BAC clone: B6Ng01-091C06, 5' end.DH903254|Mus musculus domesticus DNA, BAC clone: B6Ng01-091C06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,609,621 - 85,610,136)(85,101,716 - 85,102,296)
sequence
gaattcctgatctttccaagacttttatcatgaatggatgttggattttg
tcaaatgctttctcagcatctaacgagacgatcatgtggtttttgtcttt
gagtttgtttatatactggattacattgatggatttccgtatattgaacc
atccctgcatccctgggatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcggttagcaagaactttattgaggatttttgc
atcgatattcataagggaaattggtctgaagtactctatctttgttgggt
ctttttgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagtaccttccgtttctattttgtggaatagtttgtgaagaactgg
aattgggtcttctttgaaggtatgatagaactctgcactaaacctgtctg
gtcctgggcttttattggctgggagactattaatgactgcttctatttct
ttaggggttataggactgttgagatctttaacccgatcttgatttagctt
tggtacccggtatctgtctagaaacttgtccatttcatccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggatgctttccctgtgccctctagtgagtctggctaagggtttatcta
tcttgttgattttctcaaagaaccagctccttgattggttgattctttga
atagttcttctgtttccacttggttgatttcacccctgagtttgattatt
tcctgccttctactcctcttgggtgaattggcttccttttcttctagacc
ttttaggtgtgttgtcagctgctaatgtgtgctctctctagttcttttgg
aggcactcagagctatgagttttccttttaggatgtttcattgtgtccca
taggtttgggaatgtgtggctcattcataactccaaaagtccttatttct
ttctttattc
cacagacagtgcaagggtagcaaagattaatgcagccatccctacgcctg
tcagattgataaccacaacaaaaatgtcttcaaagacagaaactgcaaac
actcagagacagatacctccacctgcttatatgaaaggcactgagccagt
gattaaccaccctatttattcccaaaagacacagcacactgttggtatca
ctagtggacttgaccaaatgtcacaggagaaatggtgctttcttaggaca
tctgcaggagcagaagtagccctgactgagtccctgttgggggcatcaca
ccttcctctcatcttttctatttttattttgaattatgtatgtatgagtc
tgtctcagtgtgcttcctgcacgcaagtacagtgtccatggaaggcagaa
aaggctgtatgatctggagttggcatgagaggcagttggaagccctagga
taggtgctggggacccaacccatgcccactactagggcaatacgagtgct
taaacctgggccatctctcctatcgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85609621_85610136
seq2: B6Ng01-091C06.b_601_1105 (reverse)

seq1  GAATAAAGAAAGAAATTAAGGACTTTTTGGAGTTTAATGAAAATGAAGCC  50
      ||||||||||||||| ||||||| ||||||||||  |||  |||| ||||
seq2  GAATAAAGAAAGAAA-TAAGGAC-TTTTGGAGTT--ATG--AATG-AGCC  43

seq1  ACAACATACCCAAACTTATGGGACACAATGAAAGCATTCCTAAGAGGAAA  100
      || |||| ||||||| ||||||||||||||||| || |||||| ||||||
seq2  AC-ACATTCCCAAACCTATGGGACACAATGAAA-CA-TCCTAAAAGGAAA  90

seq1  ACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACATTA  150
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  ACTCATAGCTCTGAGTGCCTCCAAAA--GAACTAGAGAGAGCACACATTA  138

seq1  GCAGCTTGACAACACACCTAAAAGCTCTAGATCAAAAGGAAGCAAATTCA  200
      ||||| |||||||||||||||||| ||||||  |||||||||| ||||||
seq2  GCAGC-TGACAACACACCTAAAAGGTCTAGAAGAAAAGGAAGCCAATTCA  187

seq1  CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGACGAAATCAA  250
      ||||||||||||||| ||||||||||||||||||||||||  ||||||||
seq2  CCCAAGAGGAGTAGAAGGCAGGAAATAATCAAACTCAGGGGTGAAATCAA  237

seq1  CCAAGTGGAAAC--AAGAACTATTCAAAGAATCAACCAATCGAGGAGCTG  298
      ||||||||||||  ||||||||||||||||||||||||||| ||||||||
seq2  CCAAGTGGAAACAGAAGAACTATTCAAAGAATCAACCAATCAAGGAGCTG  287

seq1  GTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTA  348
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTA  337

seq1  GAGGGCACAGGGAAAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCACAGGGAAAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGA  387

seq1  GATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTA  448
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTA  437

seq1  CAAAAGGCTATACTCATCAAAACTGGAGAACCTGGATGAAATGGACACGT  498
      |||||||||||||||| |||||||||| ||||||||||||||||||| ||
seq2  CAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAGT  487

seq1  TTCTAGACAGATACCAGG  516
      ||||||||||||||| ||
seq2  TTCTAGACAGATACCGGG  505

seq1: chr1_85101716_85102296
seq2: B6Ng01-091C06.g_69_636

seq1  GAATTCCACAGACAGTGCAAGGGTAGCAAAGATCAATGCAGCCATCCCTA  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCCACAGACAGTGCAAGGGTAGCAAAGATTAATGCAGCCATCCCTA  50

seq1  CGCCTGTCAGATTGATAACCACAACAAAAATGTCTTCAAAGACAGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGTCAGATTGATAACCACAACAAAAATGTCTTCAAAGACAGAAACT  100

seq1  GCAAATACTCAGAGACAGATACCTCCACCTGCTTATATGAAAGGCACTGA  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACTCAGAGACAGATACCTCCACCTGCTTATATGAAAGGCACTGA  150

seq1  GCCAGTGATTAACCACCCTATTTATTCCCAAAAGACACAGCACACTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCAGTGATTAACCACCCTATTTATTCCCAAAAGACACAGCACACTGTTG  200

seq1  GTATCACTAGTGGACTTGATCAAATGTCACAGGAGAAATGGTGCTTTCTT  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTATCACTAGTGGACTTGACCAAATGTCACAGGAGAAATGGTGCTTTCTT  250

seq1  AGGACATCTGCAGGAGCAGAAGTAGCCCTGACTGAGTCCCTGTTGGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCTGCAGGAGCAGAAGTAGCCCTGACTGAGTCCCTGTTGGGGGC  300

seq1  ATCACACACCTTCATCTCATCTTTTCTATTTTTATTTTGAATTATGCATG  350
      ||  ||||||||| |||||||||||||||||||||||||||||||| |||
seq2  AT--CACACCTTCCTCTCATCTTTTCTATTTTTATTTTGAATTATGTATG  348

seq1  TATGAGTCTGTCTCAGTGTGCTTCCTGCACGCAAGTACAGTGTCGTGTCC  400
      |||||||||||||||||||||||||||||||||||||||     ||||||
seq2  TATGAGTCTGTCTCAGTGTGCTTCCTGCACGCAAGTACA-----GTGTCC  393

seq1  ATGGAAGGCAGAAAAGGCTGTCTGATCTGGAGTTGGCATGAGAGGCAGTT  450
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGGAAGGCAGAAAAGGCTGTATGATCTGGAGTTGGCATGAGAGGCAGTT  443

seq1  GGAAGCCCTAGGATAGGTGCTGGGGACCCAACCCATGCCCACTACTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCTAGGATAGGTGCTGGGGACCCAACCCATGCCCACTACTAGGG  493

seq1  CAATACGAGTGCTTAAACCTGGGCCATCTCTCCTATCGTGTGTGTGTGTG  550
      |||||||||||||||||||||||||||||||||||||      |||||||
seq2  CAATACGAGTGCTTAAACCTGGGCCATCTCTCCTATC------GTGTGTG  537

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGAGAGA  581
      |||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGAGAGA  568