BAC Information

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BAC

Clone NameB6Ng01-091P01
Chromosome1 (Build37)
Map Location 162,430,324 - 162,539,358
singlet/doubletdoublet
Overlap geneRabgap1l, Gpr52
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091P01.bB6Ng01-091P01.g
ACCDH903836DH903837
length1,0851,062
definitionDH903836|Mus musculus domesticus DNA, BAC clone: B6Ng01-091P01, 5' end.DH903837|Mus musculus domesticus DNA, BAC clone: B6Ng01-091P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,430,324 - 162,431,414)(162,538,288 - 162,539,358)
sequence
gaattccacagaaagactgggatggagaaggccatgagagcatgaaatgg
tatgctggccaacttctttccttggacaatactgtctctgagagcaagaa
atgtgtttgtgttcaccatataaatctccaaggcctggtaaagggtatca
taactatttggtgcacaaacaataaaagagaacagtaaagaagcagagtg
ctagtgttccacaacttaaatgttgacttcgttcatcatgaaaacaacca
gtgagttctaaagactgaagaattatgttcttggcagaactgagtctgta
ggggctgacgagatggttcagcgtgtgatggctcagtgaggagatgtgct
cagtgtcaagcctgacatcttgagttcaatttggggaacccataaagtgg
gttgttgttctccaaactccacatgtgcactttgtatgcaccccccacac
acacacacacacaattattttgaaaagagcctgtaagttatattccttta
tgctctacaaaagacgaggaataaataaaacaggccaagtaccacatata
ttactaatggaaaagttactgtggtgccttgaataatggcccccataggc
tcgtagatttcaatgcttggtcaccagggagtggcactatttgaaagtgt
ggcattgttggagaaagtgtattatgtggagtgagctttggggtttcaaa
agctcaattctggccttgtgtctctcttgctgttgcctgcagatctggat
gtagaactctcagctacaatgtctgccatcatgttccctgtcacgtgaat
accagactaaaactctgagtctataagcacagtccaactaaatgcttttt
aaaatccatgagttgtcatggtcatggtgtccttcatagcaacaggatgc
caaccaagacagttagctaatccagacaatattatttaaaagaaatactt
tgtagaggaaaattccatgccattctcactccacacacttgttagctgct
acatggtttcttagtactaacagtgaggtctgactgcagctattttcatt
ctttggtgctgtgctgtactctctcccccacctct
gaattcttgggacagtgaggtgacttagtgggtaaagggacttgctgtca
agcctggtgacttgagttcagtactatgatcctacctggttcaaagcgag
aactgagtcctgccagttgccctttgacctacaaatgtgtactctctgcc
aataaaatgtaatagtgacaggtacttaaaaaatggctatgaatttgtaa
tagaacaaagagggctctagggaagggtttggagtgagcacagtgaaggg
agaaatgtgtttataatataatctcaaaaatagaaaagtaaagagaaaaa
ccgaaaactgcgtattagtattgtttactagctccccctatatttactgt
ttgttatctagacccacagctaatccatcagttatgtttctaataggcac
atggtattccatttttacatgcaagcatttttgtttctgagtgatagaaa
gacaagtagcagttgttcagaacagctctgttcccgagttagaatgtcag
gctctgcacacctcttccttgagagagaactttaattgtactggtgtcag
aagaattcaatcacttctaccctgtaagaggctgatctttgacatgttta
tggaaactgcttaatcttttaatagatgactaatttttttgaagacagtg
ctgagaagcttttaccttgatatctgcaaaaccagtgttaaaaaggaaca
attttcatttgactcttaaaaatttttccagtctcaatatgtaaaagtag
aatgaaggttgtggatggaaaactaatttttctaatctatgtaattcata
tttaggtattctaagtaagtttttattttatagtgactaatttattctaa
gtttcttactttacaagaccttcagatttttttttttcttttttttttta
tccctataatttttaaaaagtccagccattgcccccgcccagtccccctc
ctacattcctctcctatctcttcccccttgctcaggagatgtcccctcca
tccccttacctcaccccccacttcctggaactaagctcttcttgaggcat
ctccccactgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162430324_162431414
seq2: B6Ng01-091P01.b_44_1128

seq1  GAATTCCACAGAAAGACTGGGATGGAGAAGGCCATGAGAGCATGAAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAAAGACTGGGATGGAGAAGGCCATGAGAGCATGAAATGG  50

seq1  TATGCTGGCCAACTTCTTTCCTTGGACAATACTGTCTCTGAGAGCAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGCCAACTTCTTTCCTTGGACAATACTGTCTCTGAGAGCAAGAA  100

seq1  ATGTGTTTGTGTTCACCATATAAATCTCCAAGGCCTGGTAAAGGGTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTGTGTTCACCATATAAATCTCCAAGGCCTGGTAAAGGGTATCA  150

seq1  TAACTATTTGGTGCACAAACAATAAAAGAGAACAGTAAAGAAGCAGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTTGGTGCACAAACAATAAAAGAGAACAGTAAAGAAGCAGAGTG  200

seq1  CTAGTGTTCCACAACTTAAATGTTGACTTCGTTCATCATGAAAACAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTTCCACAACTTAAATGTTGACTTCGTTCATCATGAAAACAACCA  250

seq1  GTGAGTTCTAAAGACTGAAGAATTATGTTCTTGGCAGAACTGAGTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCTAAAGACTGAAGAATTATGTTCTTGGCAGAACTGAGTCTGTA  300

seq1  GGGGCTGACGAGATGGTTCAGCGTGTGATGGCTCAGTGAGGAGATGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGACGAGATGGTTCAGCGTGTGATGGCTCAGTGAGGAGATGTGCT  350

seq1  CAGTGTCAAGCCTGACATCTTGAGTTCAATTTGGGGAACCCATAAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCAAGCCTGACATCTTGAGTTCAATTTGGGGAACCCATAAAGTGG  400

seq1  GTTGTTGTTCTCCAAACTCCACATGTGCACTTTGTATGCACCCCCCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTCTCCAAACTCCACATGTGCACTTTGTATGCACCCCCCACAC  450

seq1  ACACACACACACAATTATTTTGAAAAGAGCCTGTAAGTTATATTCCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAATTATTTTGAAAAGAGCCTGTAAGTTATATTCCTTTA  500

seq1  TGCTCTACAAAAGACGAGGAATAAATAAAACAGGCCAAGTACCACATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTACAAAAGACGAGGAATAAATAAAACAGGCCAAGTACCACATATA  550

seq1  TTACTAATGGAAAAGTTACTGTGGTGCCTTGAATAATGGCCCCCATAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATGGAAAAGTTACTGTGGTGCCTTGAATAATGGCCCCCATAGGC  600

seq1  TCGTAGATTTCAATGCTTGGTCACCAGGGAGTGGCACTATTTGAAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGATTTCAATGCTTGGTCACCAGGGAGTGGCACTATTTGAAAGTGT  650

seq1  GGCATTGTTGGAGAAAGTGTATTATGTGGAGTGAGCTTTGGGGTTTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGTTGGAGAAAGTGTATTATGTGGAGTGAGCTTTGGGGTTTCAAA  700

seq1  AGCTCAATTCTGGCCTTGTGTCTCTCTTGCTGTTGCCTGCAGATCTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAATTCTGGCCTTGTGTCTCTCTTGCTGTTGCCTGCAGATCTGGAT  750

seq1  GTAGAACTCTCAGCTACAATGTCTGCCATCATGTTCCCTGTCACGTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTCTCAGCTACAATGTCTGCCATCATGTTCCCTGTCACGTGAAT  800

seq1  ACCAGACTAAAACTCTGAGTCTATAAGCACAGTCCAACTAAATGCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACTAAAACTCTGAGTCTATAAGCACAGTCCAACTAAATGCTTTTT  850

seq1  AAAATCCATGAGTTGTCATGGTCATGGTGTCCTTCATAGCAACAGGATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCATGAGTTGTCATGGTCATGGTGTCCTTCATAGCAACAGGATGC  900

seq1  CAACCAAGACAGTTAGCTAATCCAGACAATATTATTTAAAAAGAAATACT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAACCAAGACAGTTAGCTAATCCAGACAATATTATTT-AAAAGAAATACT  949

seq1  TTGTAGAGGAAAATTCCATGCCATTCTCACCTCCACACAACTTGTTAGCT  1000
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  TTGTAGAGGAAAATTCCATGCCATTCTCA-CTCCACAC-ACTTGTTAGCT  997

seq1  GCTAACATGGTTTCTTAGGTACTAACAGTGAGGTCTGAACTGCAGCTATT  1050
      ||| ||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  GCT-ACATGGTTTCTTA-GTACTAACAGTGAGGTCTG-ACTGCAGCTATT  1044

seq1  TTCATTTCTTTGGTGCTGTGCTGTACTCTCT-CCCCACCTCT  1091
      |||| |||||||||||||||||||||||||| ||||||||||
seq2  TTCA-TTCTTTGGTGCTGTGCTGTACTCTCTCCCCCACCTCT  1085

seq1: chr1_162538288_162539358
seq2: B6Ng01-091P01.g_69_1130 (reverse)

seq1  CTCAGT-GGGAGATGCCCTCAAG-AGAGCTTAAGGTCCCAGGAAGT-GGG  47
      |||||| |||||||| ||||||| ||||||||  || ||||||||| |||
seq2  CTCAGTGGGGAGATG-CCTCAAGAAGAGCTTA--GTTCCAGGAAGTGGGG  47

seq1  GGTGAGGGTAGGGGGATGGGAGGGGACATCCTCTTGGAGACAAGGGGGAG  97
      ||||| |||| |||||| ||||||||||||  ||  ||| ||||||||| 
seq2  GGTGA-GGTAAGGGGAT-GGAGGGGACATCTCCT--GAG-CAAGGGGGAA  92

seq1  GAGGAATAGGAAGAGGAAATGTAGGAGGGGGACTGGGCGGGGGCAATGGC  147
      |||  ||||| ||||| |||||||||||||||||||||||||||||||||
seq2  GAG--ATAGG-AGAGG-AATGTAGGAGGGGGACTGGGCGGGGGCAATGGC  138

seq1  TGGACTTTTTAAAAATTATAGGGATAAAAAAAAAAAG-AAAAAAAAAATC  196
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGACTTTTTAAAAATTATAGGGATAAAAAAAAAAAGAAAAAAAAAAATC  188

seq1  TGAAGGTCTTGTAAAGTAAGAAACTTAAGAATAAATTAGTCACTATAAAA  246
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAAGGTCTTGTAAAGTAAGAAACTT-AGAATAAATTAGTCACTATAAAA  237

seq1  TAAAAACTTACTTAGAATACCTAAATATGAATTACATAGATTAGAAAAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTTACTTAGAATACCTAAATATGAATTACATAGATTAGAAAAAT  287

seq1  TAGTTTTCCATCCACAACCTTCATTCTACTTTTACATATTGAGACTGGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCCATCCACAACCTTCATTCTACTTTTACATATTGAGACTGGAA  337

seq1  AAATTTTTAAGAGTCAAATGAAAATTGTTCCTTTTTAACACTGGTTTTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAAGAGTCAAATGAAAATTGTTCCTTTTTAACACTGGTTTTGC  387

seq1  AGATATCAAGGTAAAAGCTTCTCAGCACTGTCTTCAAAAAAATTAGTCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAAGGTAAAAGCTTCTCAGCACTGTCTTCAAAAAAATTAGTCAT  437

seq1  CTATTAAAAGATTAAGCAGTTTCCATAAACATGTCAAAGATCAGCCTCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAAGATTAAGCAGTTTCCATAAACATGTCAAAGATCAGCCTCTT  487

seq1  ACAGGGTAGAAGTGATTGAATTCTTCTGACACCAGTACAATTAAAGTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTAGAAGTGATTGAATTCTTCTGACACCAGTACAATTAAAGTTCT  537

seq1  CTCTCAAGGAAGAGGTGTGCAGAGCCTGACATTCTAACTCGGGAACAGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAGGAAGAGGTGTGCAGAGCCTGACATTCTAACTCGGGAACAGAG  587

seq1  CTGTTCTGAACAACTGCTACTTGTCTTTCTATCACTCAGAAACAAAAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGAACAACTGCTACTTGTCTTTCTATCACTCAGAAACAAAAATG  637

seq1  CTTGCATGTAAAAATGGAATACCATGTGCCTATTAGAAACATAACTGATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGTAAAAATGGAATACCATGTGCCTATTAGAAACATAACTGATG  687

seq1  GATTAGCTGTGGGTCTAGATAACAAACAGTAAATATAGGGGGAGCTAGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCTGTGGGTCTAGATAACAAACAGTAAATATAGGGGGAGCTAGTA  737

seq1  AACAATACTAATACGCAGTTTTCGGTTTTTCTCTTTACTTTTCTATTTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACTAATACGCAGTTTTCGGTTTTTCTCTTTACTTTTCTATTTTT  787

seq1  GAGATTATATTATAAACACATTTCTCCCTTCACTGTGCTCACTCCAAACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTATATTATAAACACATTTCTCCCTTCACTGTGCTCACTCCAAACC  837

seq1  CTTCCCTAGAGCCCTCTTTGTTCTATTACAAATTCATAGCCATTTTTTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTAGAGCCCTCTTTGTTCTATTACAAATTCATAGCCATTTTTTAA  887

seq1  GTACCTGTCACTATTACATTTTATTGGCAGAGAGTACACATTTGTAGGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGTCACTATTACATTTTATTGGCAGAGAGTACACATTTGTAGGTC  937

seq1  AAAGGGCAACTGGCAGGACTCAGTTCTCGCTTTGAACCAGGTAGGATCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCAACTGGCAGGACTCAGTTCTCGCTTTGAACCAGGTAGGATCAT  987

seq1  AGTACTGAACTCAAGTCACCAGGCTTGACAGCAAGTCCCTTTACCCACTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGAACTCAAGTCACCAGGCTTGACAGCAAGTCCCTTTACCCACTA  1037

seq1  AGTCACCTCACTGTCCCAAGAATTC  1071
      |||||||||||||||||||||||||
seq2  AGTCACCTCACTGTCCCAAGAATTC  1062