BAC Information

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BAC

Clone NameB6Ng01-092A01
Chromosome1 (Build37)4 (Build37)
Map Location 52,216,750 - 52,217,21322,088,120 - 22,089,220
singlet/doubletsingletsinglet
Overlap geneStat1
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634
Downstream geneGls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092A01.bB6Ng01-092A01.g
ACCDH903884DH903885
length9841,100
definitionDH903884|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A01, 5' end.DH903885|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,216,750 - 52,217,213)(22,088,120 - 22,089,220)
sequence
gaattcacaaagggcaggaacctggatgcaggagctgttgcagaggccat
agaggggtatctctttggggcttgctctccatgactttccttatagagct
caagactaccaccccgacccctacccaccccagggtgacctcagccacag
tgggttgggccttcctcatgaatcactagttaagaaaataccctacagcc
tgatcttatggagacattttattaacaatttctccttcttctctgatctc
tgtctctgtctctgtctctctctgtctctgtctctgtctctctctctctc
tctctctctctctctctctctcatgcatacacacttacatatacacatat
aggcctcctctttctttctgtatgtttaagaagcttacaaaatagtagct
ttctatatgactttttcaaacatccttaatgttagtgatcatttcctcca
cccctcacctgccctgtcatcccatgcccaacattaagaaaggttaattt
ttacggccaggcagtggtggcgcacacctttaatcccagcacttgggagg
cagaggcaggcggatttctgagttcgaggccagcctggtctacagagtga
gttccaggacagccagggctacacatagaaaccctgtctcaagaaaaaaa
aagtaaaaacaatattttaaattagagaagtaaagacaatcaggatgaga
ttaaaatgatgtctgaatgcccttaatccaatatgactagtgtctttaga
tgtagggagatatagacaccaaaagtgacaccagtcatgaatatgcacag
agaaaatgccttgtgtagaagcagccatcttaaatccccaacagagtcat
taggtgaagccattgccaccaacaccttgacctggagcctttgcctatac
aacaatgagagataaattccattgttgatcccacccagtctgtggtattt
tgttatgccagctcattaactcaaacaaaagatt
gaattccttcttaaatgccgccttagcattgcattcacctaactgtaatc
ccaccctcaactctcacagataagctaatatagaaaggtgtatctctgac
atgtacagagcaacttttgactgcttggtgttcctctctgagtttgggca
tctggtggtgacttcataatgagaaatataggaagagcagctccaatggc
gaggtgagttcctgctgagcaaatgatactggagaagaaagctcctcttt
tgctctttgtttgaataataataataataaaaaggacctataattggatt
tccttaaagacttggagaactaatatctttataactttttggattgaaag
ttagtccttttcaattctattaacttcacagcctacagtttttagaaagt
gaggttatgtcggttctgaaggaaatcagggacaatgaagtgagcaatat
ttgcattcacaagctattctgtgttggcagattgtcatcttttgtagaaa
tatcacagtttttcaaaaggaccactttgaagatgaagaattatatttaa
tcattttttttgttaataaaaatgtcattttgaatgctccctttgacaat
ctaagatcccattgccctttggtaggtgctacccacttcaggtaggcaaa
ctacaaggaagggcaccacaatcctccaatcctcaccatagggagaacaa
tagcccgcatttgtaccttgacttcttaaagtttcaaaggcattcatgtt
agcagaaaagtgacaacttacttttctagggaaactcctagcctgcaacc
taaggagatggcagctaacagctacagcagataagagttgctgcaaaccc
acagggatggagcagacccagtttgccctagcccaagcttagtctaaaat
tctaagcctcagtgtcttgttacatgggaggaagagccaggctcttcttg
gtgacagctgtataaataagatctctgaaaaatgattttccctattctag
gaatacttcaagaaatcatgcttaagatgtggtttccacgttgtaaagtg
tgggttttttttttttcgattttcggaacaaggttttcttctgttatagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52216750_52217213
seq2: B6Ng01-092A01.b_553_920 (reverse)

seq1  TGTTGGTGGCAATGGCTACACAAAACTAAACACCAACAGAAGTAAGACCA  50
      ||||||||||||||||| |||    |||                      
seq2  TGTTGGTGGCAATGGCTTCAC----CTA----------------------  24

seq1  TTTTCATGAGTACTCCATCAAGTTAAAGGGTTTTTGTTGTCT--TTTTGG  98
           |||   ||||      |||   || |||  | || ||  || |  
seq2  -----ATG---ACTC-----TGTT-GGGGATTTAAGATGGCTGCTTCTAC  60

seq1  TCATGG-ATTGAATAAAATTGTCTTTGCACATCCATTAAGGGGGCCAGCT  147
       || || |||        || ||| |||| || ||| |  || | ||  |
seq2  ACAAGGCATT--------TTCTCTGTGCATATTCATGACTGGTGTCACTT  102

seq1  TTCTTAAAGCAATTTTTCTTTTTTTTTA-----ACTA---AAATTAGATA  189
      ||  |    | || | ||  |   | ||     ||||   | ||| ||| 
seq2  TTGGT--GTCTATATCTCCCTACATCTAAAGACACTAGTCATATTGGATT  150

seq1  TAGG---TGAACTCATGTTTTTTAGTGGGCTGAACTTATCGGTTTTAGCT  236
       |||   |  |  |||  |||         | | || |||        ||
seq2  AAGGGCATTCAGACATCATTT---------TAATCTCATC--------CT  183

seq1  GGTTGTCTTAATTAGCCATAAACTTGGAGAAAGCAGTGACTTCTTGAATC  286
      | ||||||                            | ||||||  ||| 
seq2  GATTGTCT----------------------------TTACTTCTCTAAT-  204

seq1  CTTAGCCAAATATGAGTATCAGATAATTTTATTATTTTTTTTTCGAGACA  336
       |||   ||||||          |  ||||| | ||||||| | ||||||
seq2  -TTA---AAATAT----------TGTTTTTACTTTTTTTTTCTTGAGACA  240

seq1  GGGTTTCTCTGTGTAGCCCTGGCTATTCTGGAACTCACTCTGTAGATCAG  386
      |||||||| ||||||||||||||| | ||||||||||||||||||| |||
seq2  GGGTTTCTATGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAG  290

seq1  GCTGGCCTGGAACTCAGAAATCCGCCTGTCTCTGCCTCCCGAGTGCTGGG  436
      |||||||| ||||||||||||||||||| ||||||||||| |||||||||
seq2  GCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGG  340

seq1  ATTAAAGGTGTGCACCACCAATGCCTGG  464
      ||||||||||||| |||||| |||||||
seq2  ATTAAAGGTGTGCGCCACCACTGCCTGG  368

seq1: chr4_22088120_22089220
seq2: B6Ng01-092A01.g_68_1167

seq1  GAATTCCTTCTTAAATGCCGCCTTAGCATTGCATTCACCTAACTGTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTTAAATGCCGCCTTAGCATTGCATTCACCTAACTGTAATC  50

seq1  CCACCCTCAACTCTCACAGATAAGCTAATATAGAAAGGTGTATCTCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCAACTCTCACAGATAAGCTAATATAGAAAGGTGTATCTCTGAC  100

seq1  ATGTACAGAGCAACTTTTGACTGCTTGGTGTTCCTCTCTGAGTTTGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGAGCAACTTTTGACTGCTTGGTGTTCCTCTCTGAGTTTGGGCA  150

seq1  TCTGGTGGTGACTTCATAATGAGAAATATAGGAAGAGCAGCTCCAATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGTGACTTCATAATGAGAAATATAGGAAGAGCAGCTCCAATGGC  200

seq1  GAGGTGAGTTCCTGCTGAGCAAATGATACTGGAGAAGAAAGCTCCTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGTTCCTGCTGAGCAAATGATACTGGAGAAGAAAGCTCCTCTTT  250

seq1  TGCTCTTTGTTTGAATAATAATAATAATAAAAAGGACCTATAATTGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTGTTTGAATAATAATAATAATAAAAAGGACCTATAATTGGATT  300

seq1  TCCTTAAAGACTTGGAGAACTAATATCTTTATAACTTTTTGGATTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAGACTTGGAGAACTAATATCTTTATAACTTTTTGGATTGAAAG  350

seq1  TTAGTCCTTTTCAATTCTATTAACTTCACAGCCTACAGTTTTTAGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCTTTTCAATTCTATTAACTTCACAGCCTACAGTTTTTAGAAAGT  400

seq1  GAGGTTATGTCGGTTCTGAAGGAAATCAGGGACAATGAAGTGAGCAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTATGTCGGTTCTGAAGGAAATCAGGGACAATGAAGTGAGCAATAT  450

seq1  TTGCATTCACAAGCTATTCTGTGTTGGCAGATTGTCATCTTTTGTAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCACAAGCTATTCTGTGTTGGCAGATTGTCATCTTTTGTAGAAA  500

seq1  TATCACAGTTTTTCAAAAGGACCACTTTGAAGATGAAGAATTATATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGTTTTTCAAAAGGACCACTTTGAAGATGAAGAATTATATTTAA  550

seq1  TCATTTTTTTTGTTAATAAAAATGTCATTTTGAATGCTCCCTTTGACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTTTGTTAATAAAAATGTCATTTTGAATGCTCCCTTTGACAAT  600

seq1  CTAAGATCCCATTGCCCTTTGGTAGGTGCTACCCACTTCAGGTAGGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATCCCATTGCCCTTTGGTAGGTGCTACCCACTTCAGGTAGGCAAA  650

seq1  CTACAAGGAAGGGCACCACAATCCTCCAATCCTCACCATAGGGAGAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGGAAGGGCACCACAATCCTCCAATCCTCACCATAGGGAGAACAA  700

seq1  TAGCCCGCATTTGTACCTTGACTTCTTAAAGTTTCAAAGGCATTCATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCGCATTTGTACCTTGACTTCTTAAAGTTTCAAAGGCATTCATGTT  750

seq1  AGCAGAAAAGTGACAACTTACTTTTCTAGGGAAACTCCTAGCCTGCAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAAGTGACAACTTACTTTTCTAGGGAAACTCCTAGCCTGCAACC  800

seq1  TAAGGAGATGGCAGCTAACAGCTACAGCAGATAAGAGTTGCTGCAAACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGATGGCAGCTAACAGCTACAGCAGATAAGAGTTGCTGCAAACCC  850

seq1  ACAGGGATGGAGCAGACCCAGTTTGCCCTAGCCCAAGCTTAGTCTAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGATGGAGCAGACCCAGTTTGCCCTAGCCCAAGCTTAGTCTAAAAT  900

seq1  TCTAAGCCTCAGTGTCTTGTTACATGGGAGGAAGAGCCAGGCTCTTCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCCTCAGTGTCTTGTTACATGGGAGGAAGAGCCAGGCTCTTCTTG  950

seq1  GTGACAGCTGTATAAATAAGATCTCTGAAAAAATGATTTTCCCTATTCTA  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGACAGCTGTATAAATAAGATCTCTG-AAAAATGATTTTCCCTATTCTA  999

seq1  GGAATACTTCAAGAAATCATGCTTAGATTGTGGTTT-CACGTTTGTAAAG  1049
      |||||||||||||||||||||||||   |||||||| |||| ||||||||
seq2  GGAATACTTCAAGAAATCATGCTTAAGATGTGGTTTCCACG-TTGTAAAG  1048

seq1  TTGTGGGTTTTTTTTTTTTCCGGTTTTTCGAGAC-AGGTTTTC-TCTG-T  1096
       |||||||||||||||||||  | ||||||  || |||||||| |||| |
seq2  -TGTGGGTTTTTTTTTTTTC--GATTTTCGGAACAAGGTTTTCTTCTGTT  1095

seq1  ATAGC  1101
      |||||
seq2  ATAGC  1100