BAC Information

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BAC

Clone NameB6Ng01-092A06
Chromosome1 (Build37)4 (Build37)
Map Location 111,353,709 - 111,354,06474,720,881 - 74,721,565
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092A06.bB6Ng01-092A06.g
ACCDH903891DH903892
length6131,142
definitionDH903891|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A06, 5' end.DH903892|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,353,709 - 111,354,064)(74,720,881 - 74,721,565)
sequence
gaattcttttacttgcagacatccatccagttagagcagcaccatttagc
tttggtttctttgtcaaaaatcttctattttattaatcaacctgtctgtc
tctggtccaataccatgtgatttttatcaccattgctctgtagtacagct
tgaagttagggatagttattcttccagaagttcttttatttttcagaatt
gtcttggcttttttcttcaaccaaagtatggatacagcaaatgtagttca
tttccacaacagaatactattcagctatgaaaaacaaggacactgtaaat
tttgcagggaagtgaatggaactagaaaataccaccctgagttagataga
ctagatccaaaaggacatgcattttatatattcactgataagtggatatt
agtcaaaaagtatagaaaaaccataatacagcacagactcaaagaaatta
aataaaaagtgtccaagtgatgatgtttaaattccacttagaagggggaa
caaaataatcatagaaagtcagaagttaggagggatctgggtggaagagg
gttggggaaggaaaaagagggcaacatcaggtatgggcagagatagaaaa
gtggcccaaaggg
gaattcagtctttgagggatgctgtcaatgaagacctagcggcaatagag
aagtccattgacgctttagaaaaatctctgacctccctgtctgaggtagt
tttacagaacaggagaggtcttgatttgttgttcctaaaggaaggaggac
tgtgtgctgcccttaaagaagagtgctgcttctatgcagatcatacagga
atagttagagactctatgcagaaactgagagaaagattagagcgaaggaa
acgggaacgggatgctcaacgggggtggtttgagtcgtggtttgaatcac
gaccatcttggataacttctttaatttccgctgtagccggaccaatcctt
atgatatgcttagctttagttttcggcccttgtataataaatagaggaat
ggctttcatccagagtaaaattgatacagtaaaactcatggttcttcaaa
ggcaatatcaacctatagttcaggtagatgaagagttaggggacaccaat
ctctaagattctatgattagaattagtctaaacagaagaagaggggagtg
aaaggaaataaaactgtaattcatgtaatgtatgttaaatagcccaaaga
gttgtttgtgagctttgaaacctggggctgagaacacagcagaacagacc
aggacatgcccgggcaagcccatcgcctccctagctcccacccctctgac
ctaagttaaatgttacagactgctgatgtttaaatggaccaatcatgtga
aaccgcgccaattcctcccccagccccactccttttctataaaaacccct
agcttccaagcctcggggtcgaatccactgtctcctgttatgtgagatac
gtttcgacccggagctccgccattaaaaacctcttgttgttacatcaagg
tgttgtgttctattcgtgattcttgggtgcacgccgatcgggagctgagt
gggggtttccccactgaattctttcacctatcacacaaaagcattcatgt
gttatggttgaataacaaagagaataaattttattcaaagtgactcttgc
tcctcattttttctagaaaggtgtttgaatttggttccagtcgtatctga
gaacgagttgacagttcctcactagattctgttctgagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111353709_111354064
seq2: B6Ng01-092A06.b_94_549

seq1  TTGGTTTCTTTGTCAAAA----TCAA--ATATCAAAAAATATTTGCACAT  44
      ||||||||||||||||||    || |   ||| ||  ||  | |     |
seq2  TTGGTTTCTTTGTCAAAAATCTTCTATTTTATTAATCAACCTGTCTGTCT  50

seq1  CTATATAAATACCTTGT--TTTATATCTACCTATCAATTCTGGATAGCAA  92
      ||     |||||| |||  ||| ||||  | |  |   |||| |   || 
seq2  CTGGTCCAATACCATGTGATTTTTATCACCATTGC---TCTGTAGTACAG  97

seq1  CTGAATGTT-----TAGTTTCTC---------------TATTTTTTAACA  122
      ||  | |||     |||||  ||               ||||||| |  |
seq2  CTTGAAGTTAGGGATAGTTATTCTTCCAGAAGTTCTTTTATTTTTCAGAA  147

seq1  TT-AATTAGCAGTTGT-----AACAAA----GGTGAAAGAAAA-------  155
      ||   || ||  || |     | ||||    ||  | || |||       
seq2  TTGTCTTGGCTTTTTTCTTCAACCAAAGTATGGATACAGCAAATGTAGTT  197

seq1  ------CAC---------TTATT------GTAAAAACAAAG-----GTAA  179
            |||          ||||        |||||||| |     ||||
seq2  CATTTCCACAACAGAATACTATTCAGCTATGAAAAACAAGGACACTGTAA  247

seq1  A----------ATGTCTCTTTAACCATA-------ACCC--AGTCA----  206
      |          | ||   |  ||| | |       ||||  ||| |    
seq2  ATTTTGCAGGGAAGTGAATGGAACTAGAAAATACCACCCTGAGTTAGATA  297

seq1  ---------CAAAATAACACACATTGTATGATCTCACTGATAAGTGGATA  247
               |||||  |||  |||| |||    |||||||||||||||||
seq2  GACTAGATCCAAAAGGACATGCATTTTATATATTCACTGATAAGTGGATA  347

seq1  TTAGCTCAAAAGT-TTGAATACCCAAGATACAAATCAGACCACATGCGGC  296
      ||||   |||||| | ||| | |||  |||||   |||||   | |    
seq2  TTAGTCAAAAAGTATAGAAAAACCATAATACAGCACAGACTCAAAGAAAT  397

seq1  TCAAGAAGAAGGAAGAGCAAAGTGTGGATGTTTCAGTCTTTCTTAGAAGG  346
      | || || |||      | |||||  ||||||| | |    |||||||||
seq2  TAAATAAAAAG---TGTCCAAGTGATGATGTTTAAATTCCACTTAGAAGG  444

seq1  GGGA--AAAATA  356
      ||||  ||||||
seq2  GGGAACAAAATA  456

seq1: chr4_74720881_74721565
seq2: B6Ng01-092A06.g_545_1208

seq1  TGAAGAGTTAGGGGACACCAATCTCTAAGATTCTATGATTAGAATTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTTAGGGGACACCAATCTCTAAGATTCTATGATTAGAATTAGTC  50

seq1  TAAACAGAAGAAGAGGGGAGTGAAAGGAAATAAAACTGTAATTCATGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAAGAAGAGGGGAGTGAAAGGAAATAAAACTGTAATTCATGTAA  100

seq1  TGTATGTTAAATAGCCCAAAGAGTTGTTTGTGAGCTTTGAAACCTGGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTAAATAGCCCAAAGAGTTGTTTGTGAGCTTTGAAACCTGGGGC  150

seq1  TGAGAACACAGCAGAACAGACCAGGACATGCCCGGGCAAGCCCATCGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACACAGCAGAACAGACCAGGACATGCCCGGGCAAGCCCATCGCCT  200

seq1  CCCTAGCTCCCACCCCTCTGACCTAAGTTAAATGTTACAGACTGCTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCTCCCACCCCTCTGACCTAAGTTAAATGTTACAGACTGCTGATG  250

seq1  TTTAAATGGACCAATCATGTGAAACCGCGCCAATTCCTCCCCCAGCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGACCAATCATGTGAAACCGCGCCAATTCCTCCCCCAGCCCCA  300

seq1  CTCCTTTTCTATAAAAACCCCTAGCTTCCAAGCCTCGGGGTCGAATCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCTATAAAAACCCCTAGCTTCCAAGCCTCGGGGTCGAATCCAC  350

seq1  TGTCTCCTGTTATGTGAGATACGTTTCGACCCGGAGCTCCGCCATTAAAA  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTCTCCTGTTATGTGAGATACGTTTCGACCCGGAGCTCCGCCATT-AAA  399

seq1  AACCTCTTGTTGTTACATCAAGGTGTTGTGTTCTATTCGTGATTCTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTTGTTGTTACATCAAGGTGTTGTGTTCTATTCGTGATTCTTGGG  449

seq1  TGCACGCCGAATCGGGAGCTGAGTGGGGGTTTCCCCACTGAATTCTTTCA  500
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCCG-ATCGGGAGCTGAGTGGGGGTTTCCCCACTGAATTCTTTCA  498

seq1  CCTATCACACAAAAGCATTCAATGTGTTAATGGTTGAATAACAAAGGAGA  550
      |||||||||||||||||||| ||||||| |||||||||||||||| ||||
seq2  CCTATCACACAAAAGCATTC-ATGTGTT-ATGGTTGAATAACAAA-GAGA  545

seq1  TTAAATTATATTCAAAGTGACTCTTGCTCTTCAATTTTTTTCCTAGAAAG  600
       |||||| ||||||||||||||||||||| |||   ||||| ||||||||
seq2  ATAAATTTTATTCAAAGTGACTCTTGCTCCTCA---TTTTTTCTAGAAAG  592

seq1  GTGTTTGGAATTTTGTGTTCCAGTCAGTAATCTGAGAACAGAAGTTGAAA  650
      |||||| ||||||   ||||||||| || ||||||||||   |||||| |
seq2  GTGTTT-GAATTT--GGTTCCAGTC-GT-ATCTGAGAAC--GAGTTGACA  635

seq1  CTAGTCTCCTCACTAGAATACTGTTCTTGAGAAAA  685
       |    |||||||||| || |||||| ||||||||
seq2  GT----TCCTCACTAG-ATTCTGTTC-TGAGAAAA  664