BAC Information

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BAC

Clone NameB6Ng01-092C21
Chromosome1 (Build37)
Map Location 93,267,458 - 93,500,103
singlet/doubletdoublet
Overlap geneBC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30
Downstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092C21.bB6Ng01-092C21.g
ACCDH904012DH904013
length624935
definitionDH904012|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C21, 5' end.DH904013|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,267,458 - 93,268,081)(93,499,181 - 93,500,103)
sequence
gaattccatgagcccttccttggtcactctcccgctcctccccggtgaat
ttgtcccatgacttttattgcttattactggtggtgtccatcctgtgtgc
ctcatttggtccatgagaacggggactgtgaccctctgcctggtacctgg
aatggaggccaggcaaagggcaggtgctctgcatcgttgggagaggtgtg
agtgaacagtgggggaggtctcagacctaagctggctttggacttcctaa
atctgctggttttgcatgtcacctatcttggtttcccatcggagaagcag
gcctttgtggccttgcatggatctggcctttcctgtctttcctcctgagg
gcccaggttcaagcactgcctcctagggatgatggctctggacctagcac
tttactgcctatggggctgagcactgaatggctgctgctgagtgcagagt
gcagctggcgagcctggggacaggctgaccctctttctgtcttgggcgca
gctccctggagactgtgatggggctggagaacagcagcgagctcttcacc
atctcagtaaatggtgtcctctatctacaggtgtgtggggctgtgctggc
catgtgggaagggggtgtaggggt
gaattcctcagtctgcctttcttagactttactctgctggctgctatagg
tgtggaatggcagaggaacgttaacctttaggcaagcgtgtatccccatc
catgccagcccctgtgaactgtgcttccttgatggctgcattcattggat
ttgagatgctgagagggtcagcacatctgaaggaggttttgtctggtcat
tccattatcccgatggataggaagcttgttccaaatcagtgtgttccaga
aggtctggaagcctacgacaagcaaacaccaagcgtcaggactcacgggg
aacaaagggttcctgagaaaggccaaccccatataaggaacaagactgga
gagaagatgagcattgtgggagggaagcctctacatcttaggcagaagcc
cgtcaccatcagcacctaggaatccaagcaccagaccaagaaacaatatc
cttccagccacagcaacactggggacattacactggaaaaccccagccca
gctccaggccctgaccagattctgaccatggtccaccaaggatgctgggc
aggggaagggcaaatgccactacagtcaactactgcacaggaagccccaa
gccagtgcccattgctgtacagagagctccactttcccagatcagatgca
cccgctctcttgctaaccccctggctctccctgctgcagtgagaaagtcc
gtcgtgcaagcatcaaacaggaaccacagagcagacggactcagcctcac
tgtcttgccattaaaaaagtcactgtgtaaatgcatctgaacgggtgctc
actttacactgcatcttttcccctgacattaacagtcaggttgacttctg
gtttcactgggggcagactaaggagtgtattaatcccctgatgcaaatct
cgcttaaaatgagaaaatataaccaaggaaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93267458_93268081
seq2: B6Ng01-092C21.b_45_668

seq1  GAATTCCATGAGCCCTTCCTTGGTCACTCTCCCGCTCCTCCCCGGTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGCCCTTCCTTGGTCACTCTCCCGCTCCTCCCCGGTGAAT  50

seq1  TTGTCCCATGACTTTTATTGCTTATTACTGGTGGTGTCCATCCTGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCATGACTTTTATTGCTTATTACTGGTGGTGTCCATCCTGTGTGC  100

seq1  CTCATTTGGTCCATGAGAACGGGGACTGTGACCCTCTGCCTGGTACCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGGTCCATGAGAACGGGGACTGTGACCCTCTGCCTGGTACCTGG  150

seq1  AATGGAGGCCAGGCAAAGGGCAGGTGCTCTGCATCGTTGGGAGAGGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGCCAGGCAAAGGGCAGGTGCTCTGCATCGTTGGGAGAGGTGTG  200

seq1  AGTGAACAGTGGGGGAGGTCTCAGACCTAAGCTGGCTTTGGACTTCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACAGTGGGGGAGGTCTCAGACCTAAGCTGGCTTTGGACTTCCTAA  250

seq1  ATCTGCTGGTTTTGCATGTCACCTATCTTGGTTTCCCATCGGAGAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGGTTTTGCATGTCACCTATCTTGGTTTCCCATCGGAGAAGCAG  300

seq1  GCCTTTGTGGCCTTGCATGGATCTGGCCTTTCCTGTCTTTCCTCCTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTGGCCTTGCATGGATCTGGCCTTTCCTGTCTTTCCTCCTGAGG  350

seq1  GCCCAGGTTCAAGCACTGCCTCCTAGGGATGATGGCTCTGGACCTAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTTCAAGCACTGCCTCCTAGGGATGATGGCTCTGGACCTAGCAC  400

seq1  TTTACTGCCTATGGGGCTGAGCACTGAATGGCTGCTGCTGAGTGCAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGCCTATGGGGCTGAGCACTGAATGGCTGCTGCTGAGTGCAGAGT  450

seq1  GCAGCTGGCGAGCCTGGGGACAGGCTGACCCTCTTTCTGTCTTGGGCGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGCGAGCCTGGGGACAGGCTGACCCTCTTTCTGTCTTGGGCGCA  500

seq1  GCTCCCTGGAGACTGTGATGGGGCTGGAGAACAGCAGCGAGCTCTTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGGAGACTGTGATGGGGCTGGAGAACAGCAGCGAGCTCTTCACC  550

seq1  ATCTCAGTAAATGGTGTCCTCTATCTACAGGTGTGTGGGGCTGTGCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTAAATGGTGTCCTCTATCTACAGGTGTGTGGGGCTGTGCTGGC  600

seq1  CATGTGGGAAGGGGGTGTAGGGGT  624
      ||||||||||||||||||||||||
seq2  CATGTGGGAAGGGGGTGTAGGGGT  624

seq1: chr1_93499181_93500103
seq2: B6Ng01-092C21.g_69_1002 (reverse)

seq1  TCATTTCC-TGGTT-TATTTTCTCATTTT-AGCGGGATTTGCATCAGGGG  47
      |||||||| ||||| |||||||||||||| |||| |||||||||||||||
seq2  TCATTTCCTTGGTTATATTTTCTCATTTTAAGCGAGATTTGCATCAGGGG  50

seq1  --TTATACACTCCTTAGTCTG-CCACAGTGAAA-CAGAAGTCAA-CTGAC  92
        | ||||||||||||||||| || |||||||| |||||||||| |||||
seq2  ATTAATACACTCCTTAGTCTGCCCCCAGTGAAACCAGAAGTCAACCTGAC  100

seq1  TGTTAATGTCAGGGG-AAAGATGCAGTGT-AAGTGAGCACCCGTTCAGAT  140
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  TGTTAATGTCAGGGGAAAAGATGCAGTGTAAAGTGAGCACCCGTTCAGAT  150

seq1  GCATTTACACAGTGACTTTTTTAATGGCAAGACAGTGAGGCTGAGTCCGT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTACACAGTGACTTTTTTAATGGCAAGACAGTGAGGCTGAGTCCGT  200

seq1  CTGCTCTGTGGTTCCTG-TTGATGCTTGCACGACGGACTTTCTCACTGCA  239
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGCTCTGTGGTTCCTGTTTGATGCTTGCACGACGGACTTTCTCACTGCA  250

seq1  GCAGGGAGAGCCAGGGGGTTAGCAAGAGAGCGGGTGCATCTGATCTGGGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGAGCCAGGGGGTTAGCAAGAGAGCGGGTGCATCTGATCTGGGA  300

seq1  AAGTGGAGCTCTCTGTACAGCAATGGGCACTGGCTTGGGGCTTCCTGTGC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGCTCTCTGTACAGCAATGGGCACTGGCTTGGGGCTTCCTGTGC  350

seq1  AGTAGTTGACTGTAGTGGCATTTGCCCTTCCCCTGCCCAGCATCCTTGGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTGACTGTAGTGGCATTTGCCCTTCCCCTGCCCAGCATCCTTGGT  400

seq1  GGACCATGGTCAGAATCTGGTCAGGGCCTGGAGCTGGGCTGGGGTTTTCC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATGGTCAGAATCTGGTCAGGGCCTGGAGCTGGGCTGGGGTTTTCC  450

seq1  AGTGTAATGTCCCCAGTGTTGCTGTGGCTGGAAGGATATTGTTTCTTGGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATGTCCCCAGTGTTGCTGTGGCTGGAAGGATATTGTTTCTTGGT  500

seq1  CTGGTGCTTGGATTCCTAGGTGCTGATGGTGACGGGCTTCTGCCTAAGAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCTTGGATTCCTAGGTGCTGATGGTGACGGGCTTCTGCCTAAGAT  550

seq1  GTAGAGGCTTCCCTCCCACAATGCTCATCTTCTCTCCAGTCTTGTTCCTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCTTCCCTCCCACAATGCTCATCTTCTCTCCAGTCTTGTTCCTT  600

seq1  ATATGGGGTTGGCCTTTCTCAGGAACCCTTTGTTCCCCGTGAGTCCTGAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGGTTGGCCTTTCTCAGGAACCCTTTGTTCCCCGTGAGTCCTGAC  650

seq1  GCTTGGTGTTTGCTTGTCGTAGGCTTCCAGACCTTCTGGAACACACTGAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGTTTGCTTGTCGTAGGCTTCCAGACCTTCTGGAACACACTGAT  700

seq1  TTGGAACAAGCTTCCTATCCATCGGGATAATGGAATGACCAGACAAAACC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACAAGCTTCCTATCCATCGGGATAATGGAATGACCAGACAAAACC  750

seq1  TCCTTCAGATGTGCTGACCCTCTCAGCATCTCAAATCCAATGAATGCAGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGATGTGCTGACCCTCTCAGCATCTCAAATCCAATGAATGCAGC  800

seq1  CATCAAGGAAGCACAGTTCACAGGGGCTGGCATGGATGGGGATACACGCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGGAAGCACAGTTCACAGGGGCTGGCATGGATGGGGATACACGCT  850

seq1  TGCCTAAAGGTTAACGTTCCTCTGCCATTCCACACCTATAGCAGCCAGCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAAGGTTAACGTTCCTCTGCCATTCCACACCTATAGCAGCCAGCA  900

seq1  GAGTAAAGTCTAAGAAAGGCAGACTGAGGAATTC  923
      ||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGTCTAAGAAAGGCAGACTGAGGAATTC  934