BAC Information

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BAC

Clone NameB6Ng01-092G03
Chromosome1 (Build37)
Map Location 162,819,877 - 162,870,532
singlet/doubletdoublet
Overlap geneEG620750, Rc3h1
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52
Downstream geneSerpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092G03.bB6Ng01-092G03.g
ACCDH904158DH904159
length1,1261,195
definitionDH904158|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G03, 5' end.DH904159|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,819,877 - 162,821,014)(162,869,324 - 162,870,532)
sequence
gaattccaagctttacgctgaaaagatatcagcaataatgatagggagat
agctcggccagtaaagagcttgctttgcaaacacaaggatcagagtttgg
ttcccagaacctatgttacagtgctggtctggtcgtggctgtatgagctt
gtagtcccagagctagtgaggcagagactggcagtcagatccaaaggaaa
ctaactgcatttctccaaattctaaaaggctgaagggacaattgactatc
catggagtccattagcataccaaagtgcattctggcctccaggctccctc
agaatcacaagtacctgttacctatttcaaagtctatgctagcatcctag
cccttctctttccctccagctcaagggcttccctccccacagctactcct
aagaaccgtgttatttctctcctttcaggctgtctctctctgtctctctt
gctctctttcttttttctctccctttcttactctcctttctctatgggaa
atcccctccctggcccctctgggctctctactctttcttctcttctctcc
tggccaggtccagtctactactttctctctgctcttgaatcttccagaaa
cctctggctattctctttctcttctctctgtctctgtctttctgtctgtc
tctgtctctgactctgtctctctctgtgtgtctgtctctctttctctctt
gctctctctctctctctctttctctgggtctcatatttacaataaaaagc
gctaccttaacaatataatggtgtagtcatgctgtcaatttacatacaag
cagagttctggggtttgctggccaatcagcagaacctactttgctgaact
ccaggctagcaatcaactgcataaataaataggtggacaggacaggacct
aagaaataacacccagagttgctttctggccttactacagacatgtatac
acacatatactaacacaacacacatacatgatacatacaaagagcattga
catgatatttaggatctccccagcaggtgagaagagcaattcaactacaa
tatctgggatgctggctaatataatgtttataccaagtagactcttcagg
ttaaaagaggaatctaagtatttaaa
gaattctctgaaaaagtatgaagccaaggttgtcaagtagaacaatgctt
gaaacagaatttaacaaaagatgagggtttgtatatttctaaggattttt
ctctatacttttagaatacccagcaagagtaagtaagcagccaaagcaac
aaactttaattacatacctggtccaaggaactggcagcccctagctctga
ctgctgcccagagattagaagagagttgctgaggattctggtgctggaga
atgagctctgtaactgtgcgttcacctaaagatcgagcagccctcatagc
acggatcctgccttcttcttccactagctggcaatgaaccagagtcacaa
gtttcctctgcattgggcgactcagaacactctgagtagtgctatttaga
cccacacctggaggagagaacaaggaagctatttctaggtttacagtgca
attttatgatccaggagcacttcctctggagtggcttctttatgggctag
ttctcggtctcattagcatatttaaagtaaataataaaccaacagtttgg
atatccacacctagcacttgagaggcaagggtagctagatctctgagttc
aaggccagcctggtctacagagtgagttccagggcagtcagagcaacaca
gagaaaccttgtctcaaaacatcaaaattaacaaacaagtaattaggtaa
ataaaaccatataacaataacatttaaaaagtaaagcaaacatatataga
taaatatcactcattatggcattcagaacactattactcattttaatcat
agaagaaaaactgacagaaaacagcaattaatccaagacccaaatactgt
tgttctaatagttctggcatattattactggtttatcttacaatagttaa
tagcagctctttctggacggtaacacaacttccattttcttaccgttttc
tacaaatacacctaactagacaaagaatcagtttatcaaatagggcgggg
atacagctgctagaatgcataacccctggcttaattcgcacacttcccaa
acgtcctctaccttggtggagacaagatgatcagaagttcaaagccatcc
tttgccataaagccacttaaagccacctgggctaatgagacccgccctcc
aggaaaaaaccaaccaaaccacccaaactgtcccaaaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162819877_162821014
seq2: B6Ng01-092G03.b_44_1169

seq1  GAATTCCAAGCTTTACGCTGAAAAGATATCAGCAATAATGATAGGGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTTTACGCTGAAAAGATATCAGCAATAATGATAGGGAGAT  50

seq1  AGCTCGGCCAGTAAAGAGCTTGCTTTGCAAACACAAGGATCAGAGTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGGCCAGTAAAGAGCTTGCTTTGCAAACACAAGGATCAGAGTTTGG  100

seq1  TTCCCAGAACCTATGTTACAGTGCTGGTCTGGTCGTGGCTGTATGAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAACCTATGTTACAGTGCTGGTCTGGTCGTGGCTGTATGAGCTT  150

seq1  GTAGTCCCAGAGCTAGTGAGGCAGAGACTGGCAGTCAGATCCAAAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCCAGAGCTAGTGAGGCAGAGACTGGCAGTCAGATCCAAAGGAAA  200

seq1  CTAACTGCATTTCTCCAAATTCTAAAAGGCTGAAGGGACAATTGACTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGCATTTCTCCAAATTCTAAAAGGCTGAAGGGACAATTGACTATC  250

seq1  CATGGAGTCCATTAGCATACCAAAGTGCATTCTGGCCTCCAGGCTCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGTCCATTAGCATACCAAAGTGCATTCTGGCCTCCAGGCTCCCTC  300

seq1  AGAATCACAAGTACCTGTTACCTATTTCAAAGTCTATGCTAGCATCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACAAGTACCTGTTACCTATTTCAAAGTCTATGCTAGCATCCTAG  350

seq1  CCCTTCTCTTTCCCTCCAGCTCAAGGGCTTCCCTCCCCACAGCTACTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCTTTCCCTCCAGCTCAAGGGCTTCCCTCCCCACAGCTACTCCT  400

seq1  AAGAACCGTGTTATTTCTCTCCTTTCAGGCTGTCTCTCTCTGTCTCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCGTGTTATTTCTCTCCTTTCAGGCTGTCTCTCTCTGTCTCTCTT  450

seq1  GCTCTCTTTCTTTTTTCTCTCCCTTTCTTACTCTCCTTTCTCTATGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTTCTTTTTTCTCTCCCTTTCTTACTCTCCTTTCTCTATGGGAA  500

seq1  ATCCCCTCCCTGGCCCCTCTGGGCTCTCTACTCTTTCTTCTCTTCTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCCCTGGCCCCTCTGGGCTCTCTACTCTTTCTTCTCTTCTCTCC  550

seq1  TGGCCAGGTCCAGTCTACTACTTTCTCTCTGCTCTTGAATCTTCCAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGTCCAGTCTACTACTTTCTCTCTGCTCTTGAATCTTCCAGAAA  600

seq1  CCTCTGGCTATTCTCTTTCTCTTCTCTCTGTCTCTGTCTTTCTGTCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCTATTCTCTTTCTCTTCTCTCTGTCTCTGTCTTTCTGTCTGTC  650

seq1  TCTGTCTCTGACTCTGTCTCTCTCTGTGTGTCTGTCTCTCTTTCTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTGACTCTGTCTCTCTCTGTGTGTCTGTCTCTCTTTCTCTCTT  700

seq1  GCTCTCTCTCTCTCTCTCTTTCTCTGGGTCTCATATTTACAATAAAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTCTCTCTCTCTCTTTCTCTGGGTCTCATATTTACAATAAAAAGC  750

seq1  GCTACCTTAACAATATAATGGTGTAGTCATGCTGTCAATTTACATACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTAACAATATAATGGTGTAGTCATGCTGTCAATTTACATACAAG  800

seq1  CAGAGTTCTGGGGTTTGCTGGCCAATCAGCAGAACCTACTTTGCTGAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCTGGGGTTTGCTGGCCAATCAGCAGAACCTACTTTGCTGAACT  850

seq1  CCAGGCTAGCAATCAACTGCATAAATAAATAGGTGGACAGGACAGGACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTAGCAATCAACTGCATAAATAAATAGGTGGACAGGACAGGACCT  900

seq1  AAGAAATAACACCCAGAGTTGCTTTCTGGCCTTTACTACAGACATGTATA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGAAATAACACCCAGAGTTGCTTTCTGGCC-TTACTACAGACATGTATA  949

seq1  CACACATATACTAACACAAACACACAATACATGATACATACAAAGAGCAA  1000
      ||||||||||||||||| ||||||| |||||||||||||||||||||| |
seq2  CACACATATACTAACAC-AACACAC-ATACATGATACATACAAAGAGC-A  996

seq1  TTGACAATGATAATTTTAGGATCTCACCAGCAAGGTGAGAAGAGCAATTC  1050
      ||||| ||||||  ||||||||||| ||||| ||||||||||||||||||
seq2  TTGAC-ATGATA--TTTAGGATCTCCCCAGC-AGGTGAGAAGAGCAATTC  1042

seq1  AAACTAACAATATCTGGGATGCTGGCTAATATAATGTTTATACCAAGTAG  1100
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  -AACT-ACAATATCTGGGATGCTGGCTAATATAATGTTTATACCAAGTAG  1090

seq1  AACCTCATCAGGTTTAGAAGA-GTATCTAAGTATTTAAA  1138
      |  ||| ||||| ||| |||| | |||||||||||||||
seq2  A--CTCTTCAGG-TTAAAAGAGGAATCTAAGTATTTAAA  1126

seq1: chr1_162869324_162870532
seq2: B6Ng01-092G03.g_69_1263 (reverse)

seq1  -TTTTTTTTTTTGGACAGTTTTGGTTTGGTTTGGTTTGGTTTTTTTTCCT  49
       |||||||||| ||||||||| ||  |||||||||| |   |||||||| 
seq2  TTTTTTTTTTTGGGACAGTTTGGG--TGGTTTGGTTGG---TTTTTTCC-  44

seq1  TTGAAGACGGGGTCTCATTTAGCCCAGGTTGGCTTTTAAGTTGCTTTATG  99
       || ||   |||||||| |||||||||| |||| ||||||| ||||||||
seq2  -TGGAGGGCGGGTCTCA-TTAGCCCAGG-TGGC-TTTAAGTGGCTTTATG  90

seq1  GCCAAGGATAGCTTTGAACTTCTGATCATCTTGTCTCTA-CAAGGTAGA-  147
      || |||||| ||||||||||||||||||||||||||| | ||||||||| 
seq2  GCAAAGGATGGCTTTGAACTTCTGATCATCTTGTCTCCACCAAGGTAGAG  140

seq1  GACGTTTGGGAAGTGTTGCGAATTAAGCCAGGGGTTATGCATTCTAGCAG  197
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACGTTTGGGAAGTG-TGCGAATTAAGCCAGGGGTTATGCATTCTAGCAG  189

seq1  CTGTATCCCCGCTCTTATTTGATAAACTGATTCTTTGTCTAGTTTAGGTT  247
      |||||||||||| | ||||||||||||||||||||||||||| ||||| |
seq2  CTGTATCCCCGC-CCTATTTGATAAACTGATTCTTTGTCTAG-TTAGG-T  236

seq1  GTATTTGTAGAAAACGGTAAGAAAATGGAAGTTGTTGTTACCGTCCAGAA  297
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTATTTGTAGAAAACGGTAAGAAAATGGAAGTTG-TGTTACCGTCCAGAA  285

seq1  AGAGCCTGCTATTAACTATTTGTAAGATAAACCAGTAATAATATGCCAGA  347
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAG-CTGCTATTAACTA-TTGTAAGATAAACCAGTAATAATATGCCAGA  333

seq1  ACTATTAGAACAACAGTATTTGGGTCTTGGATTAATTGCTGTTTTCTGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAGAACAACAGTATTTGGGTCTTGGATTAATTGCTGTTTTCTGTC  383

seq1  AGTTTTTCTTCTATGATTAAAATGAGTAATAGTGTTCTGAATGCCATAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTCTTCTATGATTAAAATGAGTAATAGTGTTCTGAATGCCATAAT  433

seq1  GAGTGATATTTATCTATATATGTTTGCTTTACTTTTTAAATGTTATTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATATTTATCTATATATGTTTGCTTTACTTTTTAAATGTTATTGTT  483

seq1  ATATGGTTTTATTTACCTAATTACTTGTTTGTTAATTTTGATGTTTTGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTTTATTTACCTAATTACTTGTTTGTTAATTTTGATGTTTTGAG  533

seq1  ACAAGGTTTCTCTGTGTTGCTCTGACTGCCCTGGAACTCACTCTGTAGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTTTCTCTGTGTTGCTCTGACTGCCCTGGAACTCACTCTGTAGAC  583

seq1  CAGGCTGGCCTTGAACTCAGAGATCTAGCTACCCTTGCCTCTCAAGTGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTTGAACTCAGAGATCTAGCTACCCTTGCCTCTCAAGTGCT  633

seq1  AGGTGTGGATATCCAAACTGTTGGTTTATTATTTACTTTAAATATGCTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGATATCCAAACTGTTGGTTTATTATTTACTTTAAATATGCTAA  683

seq1  TGAGACCGAGAACTAGCCCATAAAGAAGCCACTCCAGAGGAAGTGCTCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCGAGAACTAGCCCATAAAGAAGCCACTCCAGAGGAAGTGCTCCT  733

seq1  GGATCATAAAATTGCACTGTAAACCTAGAAATAGCTTCCTTGTTCTCTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATAAAATTGCACTGTAAACCTAGAAATAGCTTCCTTGTTCTCTCC  783

seq1  TCCAGGTGTGGGTCTAAATAGCACTACTCAGAGTGTTCTGAGTCGCCCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGTGGGTCTAAATAGCACTACTCAGAGTGTTCTGAGTCGCCCAA  833

seq1  TGCAGAGGAAACTTGTGACTCTGGTTCATTGCCAGCTAGTGGAAGAAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGAAACTTGTGACTCTGGTTCATTGCCAGCTAGTGGAAGAAGAA  883

seq1  GGCAGGATCCGTGCTATGAGGGCTGCTCGATCTTTAGGTGAACGCACAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGATCCGTGCTATGAGGGCTGCTCGATCTTTAGGTGAACGCACAGT  933

seq1  TACAGAGCTCATTCTCCAGCACCAGAATCCTCAGCAACTCTCTTCTAATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCTCATTCTCCAGCACCAGAATCCTCAGCAACTCTCTTCTAATC  983

seq1  TCTGGGCAGCAGTCAGAGCTAGGGGCTGCCAGTTCCTTGGACCAGGTATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCAGCAGTCAGAGCTAGGGGCTGCCAGTTCCTTGGACCAGGTATG  1033

seq1  TAATTAAAGTTTGTTGCTTTGGCTGCTTACTTACTCTTGCTGGGTATTCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAGTTTGTTGCTTTGGCTGCTTACTTACTCTTGCTGGGTATTCT  1083

seq1  AAAAGTATAGAGAAAAATCCTTAGAAATATACAAACCCTCATCTTTTGTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATAGAGAAAAATCCTTAGAAATATACAAACCCTCATCTTTTGTT  1133

seq1  AAATTCTGTTTCAAGCATTGTTCTACTTGACAACCTTGGCTTCATACTTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGTTTCAAGCATTGTTCTACTTGACAACCTTGGCTTCATACTTT  1183

seq1  TTCAGAGAATTC  1209
      ||||||||||||
seq2  TTCAGAGAATTC  1195