BAC Information

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BAC

Clone NameB6Ng01-092G12
Chromosome1 (Build37)
Map Location 114,301,288 - 114,413,032
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092G12.bB6Ng01-092G12.g
ACCDH904176DH904177
length1,2151,096
definitionDH904176|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G12, 5' end.DH904177|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,411,803 - 114,413,032)(114,301,288 - 114,302,400)
sequence
gaattcactctgtagactagacagaccttgaatgcagagttctgcctgcc
tctacttctgcctcttgaatgctgggataaagggtatgctccaccaccaa
ctagcatagacttgacccattaaaatggccctctggttgtgtctgcatag
aggtagacaagtgtataggatttcaacatgtggcagaagtactgatgaat
aagtgctggcagatatgttgctggttgtggtaggcaaaatagttggtgga
gactgaatcttgttttctagattagtgtttcttgatgggaacaaaaataa
catttaaccttatcacagtgaaaaatgaatttacaagttgttgtagacat
agggaattttttttccagagtaataaaatgtagggatgggaaatttctac
ttggtatacagggctaggaatagttcattggtacggagggacagcaaata
ccaacttgactcatagagacagaaaatacctgttatgcagaaataggaag
tatgcatttggctgcagacatcaagaaaatttagtgtgatttcttggcaa
aaaaatttaaattgaattaaaaagtgaacagatatatgggctgaaattct
gtatgctaaagatgcttaaataaatggttctgtgtatggagtcatagcta
gcttcacccagggcacagtctgttaattctggaactgtataatgtttcct
ttcctttttgaagcaggataaatgtcacttactatgggttgattgtacaa
atagtttggtaacttgctgtggtcctaggatgccatttctgtgatggaga
aaatctacagggagcaaatcttccaagaacactgtctcatcgatattggc
ctcagggctccacagcctgtacacattcatctctttcttgtcccatgtca
ctttcaagagtgaagtatgccatggggctgaaagagatacaatttcaaga
tgaatcaatgtccttataggccaagtgctctgcctttaagaagacagaac
aattattatccaacacactgcccctttcttttttcaagacagtagaattg
aattcctaataggcttgcaatttaaaatatgctttattcgtagtgctcct
ctgccacatcctccccacacttgctgtggctcatcaatgtactttgtagc
caggacataagaacaactgtctatcctctaggttaactgagttagggatg
gcattgcccttatgc
gaattcattaatccatggtttcttcctggaaatgtatgtccaggtcctcg
aaactataatcaccatttgcactgtctttattccaacttctcagcccatt
tgctttcccttcattttctgtctcaatcttcttaattatgtgatttctaa
agaataaaagaatttaagttaatgtatcaaacttgaaagcttaaaatata
tactctgttaattattgtttccctcctaagtacaagaaaggtaaaccatc
aacattatatttgtttgaacaaaggataattcttgttcaaactaaagaca
tgaacattttctttcttttcttgtttttcatctttttttttttaaaatag
ggtctaaattgcctactacttaaatggactctttaaaaaaaacaaacaaa
caaacaaacaaaaaaaaaaccatgaaatagagtttatttagggcctgggg
aggggagttagcagcgtagaagaggcagagaaaggcagagaaaaggagag
agtaaagaagtaaaggccggccaagaccatgtggagagagtcgggaaggg
actggggagagagagggcaagctagaagcaagagtaagagagacaagaaa
agcaagagggcaagagttaaatggccttctattgacatttatcaagtact
aaaattaaaagcacatacaggcatgcccactggtgttctataactttctc
taaaagattcatgagaacctatcatctctaacataggagttgtcatctat
ttattatgtgaataacatttgcttttcataaaatgaacaatagttttccc
tgagtctctgctcctgattttacatttgctttttatataagccattttct
aacacattaaacccaataccacaacatataggattgaagacagccagggc
tatacagagaaaccctgtctcaaaagaccaaaccaaaaaaaaagatacca
aatattagaccaatatagattaaaatagtattactgcatctttttcttct
cacttctactatggggagtagtggctaaagagattaaggagttttagctt
atgattaaacaaagcagtgatttttgtttttgttttaaatcttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114411803_114413032
seq2: B6Ng01-092G12.b_44_1258 (reverse)

seq1  GCATAAGAGCAATGCCATCACTAACTCAGTTTACCTTTAAAGATAGGACA  50
      ||||||| ||||||||||| ||||||||||| ||| |  | |||| ||||
seq2  GCATAAGGGCAATGCCATCCCTAACTCAGTTAACC-TAGAGGATA-GACA  48

seq1  GTTTGTTTCTTTTATGTCCTTGCTACAAAGTACATTGGATGAGCAACAGC  100
      | ||||   | ||||||||| ||||||||||||||| ||||||| |||||
seq2  G-TTGT---TCTTATGTCCTGGCTACAAAGTACATT-GATGAGCCACAGC  93

seq1  AAGTGTGTGTGGAGGATGGTTGTGCAGAGGAAGCACTACAGAATAAAGCA  150
      ||  ||||| ||||||||  || ||||||| |||||||| ||||||||||
seq2  AA--GTGTGGGGAGGATG--TG-GCAGAGG-AGCACTAC-GAATAAAGCA  136

seq1  TATTTTAAATTGCAGGCCTATGAGGAATTCAATTCTACTTGTCCTTGAAA  200
      |||||||||||||| |||||| |||||||||||||||| ||| |||||||
seq2  TATTTTAAATTGCAAGCCTATTAGGAATTCAATTCTAC-TGT-CTTGAAA  184

seq1  AAAGGAAGGGGCAGTGTGTTGGATAATAATTGTTCTGTCTTCCTTAAAGG  250
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAGAAAGGGGCAGTGTGTTGGATAATAATTGTTCTGTCTT-CTTAAAGG  233

seq1  CAGAGCACTTGGCCTAT-AGGACATTGATTCATCTTGAAATTGTATCTCT  299
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGAGCACTTGGCCTATAAGGACATTGATTCATCTTGAAATTGTATCTCT  283

seq1  TTCAGCCCCATGGCATACTTCACTCTTGAAAGTGACATGGGACAAG-AAG  348
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCAGCCCCATGGCATACTTCACTCTTGAAAGTGACATGGGACAAGAAAG  333

seq1  AGATGAATGTGTACAGGCTGTGGAGCCCTGAGGCCAATATCGATGAGACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATGTGTACAGGCTGTGGAGCCCTGAGGCCAATATCGATGAGACA  383

seq1  GTGTTCTTGGAAGATTTGCTCCCTGTAGATTTTCTCCATCACAGAAATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTGGAAGATTTGCTCCCTGTAGATTTTCTCCATCACAGAAATGG  433

seq1  CATCCTAGGACCACAGCAAGTTACCAAACTATTTGTACAATCAACCCATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAGGACCACAGCAAGTTACCAAACTATTTGTACAATCAACCCATA  483

seq1  GTAAGTGACATTTATCCTGCTTCAAAAAGGAAAGGAAACATTATACAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGACATTTATCCTGCTTCAAAAAGGAAAGGAAACATTATACAGTT  533

seq1  CCAGAATTAACAGACTGTGCCCTGGGTGAAGCTAGCTATGACTCCATACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTAACAGACTGTGCCCTGGGTGAAGCTAGCTATGACTCCATACA  583

seq1  CAGAACCATTTATTTAAGCATCTTTAGCATACAGAATTTCAGCCCATATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCATTTATTTAAGCATCTTTAGCATACAGAATTTCAGCCCATATA  633

seq1  TCTGTTCACTTTTTAATTCAATTTAAATTTTTTTGCCAAGAAATCACACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCACTTTTTAATTCAATTTAAATTTTTTTGCCAAGAAATCACACT  683

seq1  AAATTTTCTTGATGTCTGCAGCCAAATGCATACTTCCTATTTCTGCATAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTTGATGTCTGCAGCCAAATGCATACTTCCTATTTCTGCATAA  733

seq1  CAGGTATTTTCTGTCTCTATGAGTCAAGTTGGTATTTGCTGTCCCTCCGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTTTCTGTCTCTATGAGTCAAGTTGGTATTTGCTGTCCCTCCGT  783

seq1  ACCAATGAACTATTCCTAGCCCTGTATACCAAGTAGAAATTTCCCATCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGAACTATTCCTAGCCCTGTATACCAAGTAGAAATTTCCCATCCC  833

seq1  TACATTTTATTACTCTGGAAAAAAAATTCCCTATGTCTACAACAACTTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTATTACTCTGGAAAAAAAATTCCCTATGTCTACAACAACTTGT  883

seq1  AAATTCATTTTTCACTGTGATAAGGTTAAATGTTATTTTTGTTCCCATCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTTTTCACTGTGATAAGGTTAAATGTTATTTTTGTTCCCATCA  933

seq1  AGAAACACTAATCTAGAAAACAAGATTCAGTCTCCACCAACTATTTTGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACTAATCTAGAAAACAAGATTCAGTCTCCACCAACTATTTTGCC  983

seq1  TACCACAACCAGCAACATATCTGCCAGCACTTATTCATCAGTACTTCTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAACCAGCAACATATCTGCCAGCACTTATTCATCAGTACTTCTGC  1033

seq1  CACATGTTGAAATCCTATACACTTGTCTACCTCTATGCAGACACAACCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTGAAATCCTATACACTTGTCTACCTCTATGCAGACACAACCAG  1083

seq1  AGGGCCATTTTAATGGGTCAAGTCTATGCTAGTTGGTGGTGGAGCATACC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATTTTAATGGGTCAAGTCTATGCTAGTTGGTGGTGGAGCATACC  1133

seq1  CTTTATCCCAGCATTCAAGAGGCAGAAGTAGAGGCAGGCAGAACTCTGCA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCCAGCATTCAAGAGGCAGAAGTAGAGGCAGGCAGAACTCTGCA  1183

seq1  TTCAAGGTCTGTCTAGTCTACAGAGTGAATTC  1230
      ||||||||||||||||||||||||||||||||
seq2  TTCAAGGTCTGTCTAGTCTACAGAGTGAATTC  1215

seq1: chr1_114301288_114302400
seq2: B6Ng01-092G12.g_68_1163

seq1  GAATTCATTAATCCATGGTTTCTTCCTGGAAATGTATGTCCAGGTCCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATCCATGGTTTCTTCCTGGAAATGTATGTCCAGGTCCTCG  50

seq1  AAACTATAATCACCATTTGCACTGTCTTTATTCCAACTTCTCAGCCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAATCACCATTTGCACTGTCTTTATTCCAACTTCTCAGCCCATT  100

seq1  TGCTTTCCCTTCATTTTCTGTCTCAATCTTCTTAATTATGTGATTTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCCTTCATTTTCTGTCTCAATCTTCTTAATTATGTGATTTCTAA  150

seq1  AGAATAAAAGAATTTAAGTTAATGTATCAAACTTGAAAGCTTAAAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAGAATTTAAGTTAATGTATCAAACTTGAAAGCTTAAAATATA  200

seq1  TACTCTGTTAATTATTGTTTCCCTCCTAAGTACAAGAAAGGTAAACCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTTAATTATTGTTTCCCTCCTAAGTACAAGAAAGGTAAACCATC  250

seq1  AACATTATATTTGTTTGAACAAAGGATAATTCTTGTTCAAACTAAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATATTTGTTTGAACAAAGGATAATTCTTGTTCAAACTAAAGACA  300

seq1  TGAACATTTTCTTTCTTTTCTTGTTTTTCATCTTTTTTTTTTTAAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTTCTTTCTTTTCTTGTTTTTCATCTTTTTTTTTTTAAAATAG  350

seq1  GGTCTAAATTGCCTACTACTTAAATGGACTCTTTAAAAAAAACAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAATTGCCTACTACTTAAATGGACTCTTTAAAAAAAACAAACAAA  400

seq1  CAAACAAACAAAAAAAAAACCATGAAATAGAGTTTATTTAGGGCCTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAAAAAAACCATGAAATAGAGTTTATTTAGGGCCTGGGG  450

seq1  AGGGGAGTTAGCAGCGTAGAAGAGGCAGAGAAAGGCAGAGAAAAGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGTTAGCAGCGTAGAAGAGGCAGAGAAAGGCAGAGAAAAGGAGAG  500

seq1  AGTAAAGAAGTAAAGGCCGGCCAAGACCATGTGGAGAGAGTCGGGAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAAGTAAAGGCCGGCCAAGACCATGTGGAGAGAGTCGGGAAGGG  550

seq1  ACTGGGGAGAGAGAGGGCAAGCTAGAAGCAAGAGTAAGAGAGACAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAGAGAGAGGGCAAGCTAGAAGCAAGAGTAAGAGAGACAAGAAA  600

seq1  AGCAAGAGGGCAAGAGTTAAATGGCCTTCTATTGACATTTATCAAGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGGGCAAGAGTTAAATGGCCTTCTATTGACATTTATCAAGTACT  650

seq1  AAAATTAAAAGCACATACAGGCATGCCCACTGGTGTTCTATAACTTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAAGCACATACAGGCATGCCCACTGGTGTTCTATAACTTTCTC  700

seq1  TAAAAGATTCATGAGAACCTATCATCTCTAACATAGGAGTTGTCATCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATTCATGAGAACCTATCATCTCTAACATAGGAGTTGTCATCTAT  750

seq1  TTATTATGTGAATAACATTTGCTTTTCATAAAATGAACAATAGTTTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTGAATAACATTTGCTTTTCATAAAATGAACAATAGTTTTCCC  800

seq1  TGAGTCTCTGCTCCTGATTTTACATTTGCTTTTTATATAAGCCATTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTCTGCTCCTGATTTTACATTTGCTTTTTATATAAGCCATTTTCT  850

seq1  AACACATTAAACCCAATACCACAACATATAGGATTGAAGACAGCCAGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTAAACCCAATACCACAACATATAGGATTGAAGACAGCCAGGGC  900

seq1  TATACAGAGAAACCCTGTCTCAAAAAGACCAAACCAAAAAAAAAAAGATA  950
      ||||||||||||||||||||| |||||||||||||  |||||||||||||
seq2  TATACAGAGAAACCCTGTCTC-AAAAGACCAAACC--AAAAAAAAAGATA  947

seq1  CCAAATAATTAGACCAAATAATAAGAATTAAAATAGTAATTACTGCAATC  1000
      |||||| ||||||||    ||||   ||||||||||| |||||||| |||
seq2  CCAAAT-ATTAGACC----AATATAGATTAAAATAGT-ATTACTGC-ATC  990

seq1  TTTTTCTTCTTCACTTCTACCTAT-GTGAGTAAGGTGCTATAGAGAATTA  1049
      ||||||||| ||||||||| |||| | |||| ||  |||| |||||  | 
seq2  TTTTTCTTC-TCACTTCTA-CTATGGGGAGT-AGTGGCTAAAGAGA--TT  1035

seq1  AAGGAGTTTTTAGCTATTGATTATACAAAGCAGTGA-TTTTGTTTTTGTT  1098
      |||||| ||||||||  |||||| |||||||||||| |||||||||||||
seq2  AAGGAG-TTTTAGCTTATGATTAAACAAAGCAGTGATTTTTGTTTTTGTT  1084

seq1  TTTAACATTCTTAGA  1113
      || ||   |||||||
seq2  TTAAA---TCTTAGA  1096