BAC Information

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BAC

Clone NameB6Ng01-092K05
Chromosome1 (Build37)
Map Location 145,472,527 - 145,650,311
singlet/doubletdoublet
Overlap geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5
Upstream geneLOC545369
Downstream geneRgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21, Rgs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092K05.bB6Ng01-092K05.g
ACCDH904344DH904345
length1,2091,145
definitionDH904344|Mus musculus domesticus DNA, BAC clone: B6Ng01-092K05, 5' end.DH904345|Mus musculus domesticus DNA, BAC clone: B6Ng01-092K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,472,527 - 145,473,742)(145,649,165 - 145,650,311)
sequence
gaattccagttcagccctgcttacacagaaggtcaaggttagtctgtact
tttcaaaacctaaaataagcaactcacaataactaagtagaacacttatt
cacattcactaatataaagaaaaatactaaaaaggatatatcaccaaata
cttaaagtataagattgaagtgggttggaaaagatgagatttatttattt
tatgtacattaacatgaggcatgtattcattagaacaaatgtagcatgaa
tgtgtgtagtcatcctaagaagaaaatgggaagcagctactaaactttcc
aaaaggctacatgcttgtgaattaaaacaggacatacatttcatttgttc
tttttaaggtttcacttctacgtacatcaaatgtctgtgccccagtctct
aatagggctgcatcctcctgctagggaggtccatataaaggaccagactt
gttttagaagctccttaaggtctccagataaagtcaaaatatagcaattg
cttttaaaaacctgacagtatcctacccttcacataagagcttcatctaa
aagtttctgtaactgtctctaaagcaactgctctcaaccactctaatgct
gcaatcctttagtacaattctcttgttgtgacctcacgcttaaaatcatt
tccattgctacttcataactgcaattttgctactgttctgaatcacaatg
taaatatctgtgttcccgtggtctgagagagctcttgggaggacctacag
aattcatgtaatagactataattttgtaaacttttacttagttttcctta
aattgttttctcccaattaacaaatgttcaatgagcctttccttctagtc
tattgctattcctttgtgtcaccatccacaagccccaggaatatttttct
acctgggacctccagtggccacacctggctgtgaccagggattctggtct
ccattacaatcgctgcagtctcactgtcagtgacagacagcttgtttgca
agagcatccacccagctcaccttcattccatggggattcttcatggtgca
gactcagcctcgagctttgttccccctaccccttcatttctagctataag
tacaaatgggatgtctccatcatacctgtcacctcagctagggatgtatt
gtggggaaggaacttgaaaatttaagcttgagtgacgatgactcccagaa
ctggtcttc
gaattcaaatctcagtattattttatatttatagtatgaaatatctggga
caaaatgtatgtttgctttgtacactttaaaatcaataagaaaaatatac
ctaccatgtattcttgtctttaaattaatggtccaaatttttatttgcct
agtagtgtcttctcaaagtgtttctcaaaatgtggtacacagatcagttg
cattagaatcacttgggaaacttattaaagattctttcccctacatgaga
atatctggggagggggccaggtaacatgtaatttaaagagcatccagaga
tggtcattttcagaaatgctgatttacaatataaacgtataaacaattta
actgtaactcatttattccttgaatattttattaagtgcttaacactgaa
gaataaatcttagaaatcagaattttccacttatttgttagttatccctc
agtgggaaggattctagattaggaataagaaacctgtgtgctagccaaac
tattcttttatccccatcaatgtccattctagttctaaatcctggtatca
aggcaaaattttacaaaattagctaaggaaaaaaacttattatttcagtt
attaacaataaaaatttatttttgtttaaagaaaaaaactgttttaatac
agaacaacctgtgttgtaaacattaagaattatgggctgatacagtagtg
gggcgatacctgtttttgttttaaagtaccaggctacattacttctctta
caattcaaaacagcaggcaaaagaataaaactacaaaatacaaaacccta
ggcaaaaaataactacacaatgcaaaacactaagcaaaagaataaatcta
caaaagccccagatattttacctccattcatgttcataacaatgatggac
tggggagaccctaacctagcttgaatagtcaccaagaaaccacttacctt
ttccacaagtggaattactgctggtgctcagctaaggtctttaacaattc
cataatgaaaggcaagtaattatgcttccttctgatatttttcaatctgg
aaaataaaccacattttctggattctatcattcctatcattcatttaaaa
tcctcattctcataaccggatgagggatagatatgatccctcccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_145472527_145473742
seq2: B6Ng01-092K05.b_42_1250

seq1  GAATTCCAGTTCAGCCCTGCTTACACAGAAGGTCAAGGTTAGTCTGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTCAGCCCTGCTTACACAGAAGGTCAAGGTTAGTCTGTACT  50

seq1  TTTCAAAACCTAAAATAAGCAACTCACAATAACTAAGTAGAACACTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAACCTAAAATAAGCAACTCACAATAACTAAGTAGAACACTTATT  100

seq1  CACATTCACTAATATAAAGAAAAATACTAAAAAGGATATATCACCAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCACTAATATAAAGAAAAATACTAAAAAGGATATATCACCAAATA  150

seq1  CTTAAAGTATAAGATTGAAGTGGGTTGGAAAAGATGAGATTTATTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTATAAGATTGAAGTGGGTTGGAAAAGATGAGATTTATTTATTT  200

seq1  TATGTACATTAACATGAGGCATGTATTCATTAGAACAAATGTAGCATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACATTAACATGAGGCATGTATTCATTAGAACAAATGTAGCATGAA  250

seq1  TGTGTGTAGTCATCCTAAGAAGAAAATGGGAAGCAGCTACTAAACTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAGTCATCCTAAGAAGAAAATGGGAAGCAGCTACTAAACTTTCC  300

seq1  AAAAGGCTACATGCTTGTGAATTAAAACAGGACATACATTTCATTTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTACATGCTTGTGAATTAAAACAGGACATACATTTCATTTGTTC  350

seq1  TTTTTAAGGTTTCACTTCTACGTACATCAAATGTCTGTGCCCCAGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGGTTTCACTTCTACGTACATCAAATGTCTGTGCCCCAGTCTCT  400

seq1  AATAGGGCTGCATCCTCCTGCTAGGGAGGTCCATATAAAGGACCAGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGCTGCATCCTCCTGCTAGGGAGGTCCATATAAAGGACCAGACTT  450

seq1  GTTTTAGAAGCTCCTTAAGGTCTCCAGATAAAGTCAAAATATAGCAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGAAGCTCCTTAAGGTCTCCAGATAAAGTCAAAATATAGCAATTG  500

seq1  CTTTTAAAAACCTGACAGTATCCTACCCTTCACATAAGAGCTTCATCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAACCTGACAGTATCCTACCCTTCACATAAGAGCTTCATCTAA  550

seq1  AAGTTTCTGTAACTGTCTCTAAAGCAACTGCTCTCAACCACTCTAATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTGTAACTGTCTCTAAAGCAACTGCTCTCAACCACTCTAATGCT  600

seq1  GCAATCCTTTAGTACAATTCTCTTGTTGTGACCTCACGCTTAAAATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCTTTAGTACAATTCTCTTGTTGTGACCTCACGCTTAAAATCATT  650

seq1  TCCATTGCTACTTCATAACTGCAATTTTGCTACTGTTCTGAATCACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCTACTTCATAACTGCAATTTTGCTACTGTTCTGAATCACAATG  700

seq1  TAAATATCTGTGTTCCCGTGGTCTGAGAGAGCTCTTGGGAGGACCTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCTGTGTTCCCGTGGTCTGAGAGAGCTCTTGGGAGGACCTACAG  750

seq1  AATTCATGTAATAGACTATAATTTTGTAAACTTTTACTTAGTTTTCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGTAATAGACTATAATTTTGTAAACTTTTACTTAGTTTTCCTTA  800

seq1  AATTGTTTTCTCCCAATTAACAAATGTTCAATGAGCCTTTCCTTCTAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTCTCCCAATTAACAAATGTTCAATGAGCCTTTCCTTCTAGTC  850

seq1  TATTGCTATTCCTTTGTGTCACCATCCACCAAGCCCCAGGAATA-TTTTC  899
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  TATTGCTATTCCTTTGTGTCACCATCCA-CAAGCCCCAGGAATATTTTTC  899

seq1  TACCTGGGACCTCCAGTGGCCACACCTGGCTGTGACCAGGGATTCTGGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGACCTCCAGTGGCCACACCTGGCTGTGACCAGGGATTCTGGTC  949

seq1  TCCATTACAATCGCTGCAGTCTCACTGTCAGTGACAGAACAGCTTGTTTG  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCATTACAATCGCTGCAGTCTCACTGTCAGTGACAG-ACAGCTTGTTTG  998

seq1  CAAGAGCATCCACCCAGCTCACCTTCATTCCATGGGGATTCTTCATGGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCATCCACCCAGCTCACCTTCATTCCATGGGGATTCTTCATGGTG  1048

seq1  CAGACTCAG-CTC-AGCTCTGTTCCCCCTACCCTCTCCATTCTAGCTATA  1097
      ||||||||| ||| |||| ||||||||||||||  ||  |||||||||||
seq2  CAGACTCAGCCTCGAGCTTTGTTCCCCCTACCCCTTCATTTCTAGCTATA  1098

seq1  AGTCACAAATGGGATGTCTCCATCATACCTGTCACCTCAGAGCTCAGGGA  1147
      ||| ||||||||||||||||||||||||||||||||||  |||| |||||
seq2  AGT-ACAAATGGGATGTCTCCATCATACCTGTCACCTC--AGCT-AGGGA  1144

seq1  TGTA-TGTGGGAAAGGACACTGAAAAATTTTAAGCTTGAAGTGATAGATG  1196
      |||| |||||| |||||   ||||||  |||||||||| |||||  ||||
seq2  TGTATTGTGGGGAAGGAACTTGAAAA--TTTAAGCTTG-AGTGA-CGATG  1190

seq1  ACTCCAAGAAACTTGTCTTC  1216
      ||||| || |||| ||||||
seq2  ACTCCCAG-AACTGGTCTTC  1209

seq1: chr1_145649165_145650311
seq2: B6Ng01-092K05.g_71_1215 (reverse)

seq1  CGGGAGGGATCAAATCTTATTCCTCATACTGTTTATGAGAATGAAGGATT  50
      |||||||||||| ||| ||| |||||| | | ||||||||||| ||||||
seq2  CGGGAGGGATCATATC-TATCCCTCAT-CCGGTTATGAGAATG-AGGATT  47

seq1  TTAAATTGAATGATA-GAATGATAGAAT-CAGAAAATGTGTTTTATTTT-  97
      ||||| ||||||||| |||||||||||| ||||||||||| |||||||| 
seq2  TTAAA-TGAATGATAGGAATGATAGAATCCAGAAAATGTGGTTTATTTTC  96

seq1  CAGATTG-AAAATATCAGAAGGAAGCATAATTACTTGCCTTTCATTATGG  146
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGAAAAATATCAGAAGGAAGCATAATTACTTGCCTTTCATTATGG  146

seq1  AATTGTTAAAGACCTTAGCTGAGCACCAGCAGTTAATTCCACTTGTGGAA  196
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATTGTTAAAGACCTTAGCTGAGCACCAGCAG-TAATTCCACTTGTGGAA  195

seq1  AAGGTAAGTGGTTTCTTGGTGACTATTCAAGCTAGGTTAGGGTCTCCCCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAGTGGTTTCTTGGTGACTATTCAAGCTAGGTTAGGGTCTCCCCA  245

seq1  GTCCATCATTGTTATGAACATGAATGGAGGTAAAATATCTGGGGCTTTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCATTGTTATGAACATGAATGGAGGTAAAATATCTGGGGCTTTTG  295

seq1  TAGATTTATTCTTTTGCTTAGTGTTTTGCATTGTGTAGTTATTTTTTTGC  346
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGATTTATTCTTTTGCTTAGTGTTTTGCATTGTGTAGTTA-TTTTTTGC  344

seq1  CTAGGGTTTTGTATTTTGTAGTTTTATTCTTTTGCCTGCTGTTTTGAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTTTTGTATTTTGTAGTTTTATTCTTTTGCCTGCTGTTTTGAATT  394

seq1  GTAAGAGAAGTAATGTAGCCTGGTACTTTAAAACAAAAACAGGTATCGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGAAGTAATGTAGCCTGGTACTTTAAAACAAAAACAGGTATCGCC  444

seq1  CCACTACTGTATCAGCCCATAATTCTTAATGTTTACAACACAGGTTGTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACTGTATCAGCCCATAATTCTTAATGTTTACAACACAGGTTGTTC  494

seq1  TGTATTAAAACAGTTTTTTTCTTTAAACAAAAATAAATTTTTATTGTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAAACAGTTTTTTTCTTTAAACAAAAATAAATTTTTATTGTTAA  544

seq1  TAACTGAAATAATAAGTTTTTTTCCTTAGCTAATTTTGTAAAATTTTGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAAATAATAAGTTTTTTTCCTTAGCTAATTTTGTAAAATTTTGCC  594

seq1  TTGATACCAGGATTTAGAACTAGAATGGACATTGATGGGGATAAAAGAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACCAGGATTTAGAACTAGAATGGACATTGATGGGGATAAAAGAAT  644

seq1  AGTTTGGCTAGCACACAGGTTTCTTATTCCTAATCTAGAATCCTTCCCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGCTAGCACACAGGTTTCTTATTCCTAATCTAGAATCCTTCCCAC  694

seq1  TGAGGGATAACTAACAAATAAGTGGAAAATTCTGATTTCTAAGATTTATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGATAACTAACAAATAAGTGGAAAATTCTGATTTCTAAGATTTATT  744

seq1  CTTCAGTGTTAAGCACTTAATAAAATATTCAAGGAATAAATGAGTTACAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGTTAAGCACTTAATAAAATATTCAAGGAATAAATGAGTTACAG  794

seq1  TTAAATTGTTTATACGTTTATATTGTAAATCAGCATTTCTGAAAATGACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGTTTATACGTTTATATTGTAAATCAGCATTTCTGAAAATGACC  844

seq1  ATCTCTGGATGCTCTTTAAATTACATGTTACCTGGCCCCCTCCCCAGATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGATGCTCTTTAAATTACATGTTACCTGGCCCCCTCCCCAGATA  894

seq1  TTCTCATGTAGGGGAAAGAATCTTTAATAAGTTTCCCAAGTGATTCTAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGTAGGGGAAAGAATCTTTAATAAGTTTCCCAAGTGATTCTAAT  944

seq1  GCAACTGATCTGTGTACCACATTTTGAGAAACACTTTGAGAAGACACTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGATCTGTGTACCACATTTTGAGAAACACTTTGAGAAGACACTAC  994

seq1  TAGGCAAATAAAAATTTGGACCATTAATTTAAAGACAAGAATACATGGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAATAAAAATTTGGACCATTAATTTAAAGACAAGAATACATGGTA  1044

seq1  GGTATATTTTTCTTATTGATTTTAAAGTGTACAAAGCAAACATACATTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTTTTCTTATTGATTTTAAAGTGTACAAAGCAAACATACATTTT  1094

seq1  GTCCCAGATATTTCATACTATAAATATAAAATAATACTGAGATTTGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGATATTTCATACTATAAATATAAAATAATACTGAGATTTGAATT  1144

seq1  C  1147
      |
seq2  C  1145