BAC Information

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BAC

Clone NameB6Ng01-092L13
Chromosome1 (Build37)
Map Location 153,097,805 - 153,098,963
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286
Downstream geneIvns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092L13.bB6Ng01-092L13.g
ACCDH904403DH904404
length1,2791,134
definitionDH904403|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L13, 5' end.DH904404|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagcagagaatcccatggcccctagaggaggtaccactttcaggc
gctctaacatgcccaggaacttaggatcccaggatcccaagaggttggtc
acaccaggatctcagggtatcagaggaagtttgactgccaagaactctga
cacacccagaatctcaggatcacaggatcctggaatcacaggatcacaga
gaatgctggactctgagaagttctgactcaactgggactataggaaggac
aggctccaatcaaatatgtcgagggcagggagcacttgagataatcagat
ggcaggaggcaagcttaagaacagaagcaacagaaaccaaggttacttgg
catcatcagaacccaactctcccaccatagcaagtcctagatatatcatc
acactagaaaagcaagatatagatccaaagtcacttctcatgatgatgat
ggtggactataagaaggatttaaataactaccttaaagaaatacaggaga
acacagatagaatgggtagaagcccttaaagaggaaacagcaatatccct
taaagaattataggaaaacacatccaaacaggtgaaagaattgaacaaaa
ccattcaggatctaaaaatgggaatagaaacaataaagaaatcacaaagg
gagacaactctggagatagagaacctaggaaagaagtcaggagccataga
tgcaagcatcaccaacagaatacaaaaggtagaagagagaatctcaggtg
cagaagataccatagaaaacatggacacaacaatcaaagaaaatgcaaaa
tgcaaaaagatcctaacacaaaacatccaggaaatccaggacacagtgtg
aagaccaaacctaaggataataggtataaatgagaaagatttccaactta
aagggtcagcaaatatcttcaacaaaattatggaagaaaacttccccaac
ctaaaaaagagatgcccatgaacatacaagaagcctacagaactccaaat
agtttgaaccagaaaattaattccctcctgtcacataatatctaaacacc
aatgcacaaaacaaagaattttaaagcagtaaagagaaaggtcagtacat
ataaaggcagactatcaggattaccctgacttctctcaggactatgaagc
aaagagctgacagatgttctatacgaccttaagaaacaaatgccagctca
ggctataatccggcacctaattccatgaatggaagcagaatcttagacat
ttaatcctatacagaagaatatgcctctc
gaattcagtcgtccttgctccatcccggaagttgccttactcatcgaaat
tgccctatggagggttcaatatggccatatattcttcacagctcctacct
taagtaggtggcgtctattttcccacctccttggatctggggtgactttg
agagttatgggatcacgggatatagcagaagcagcatcacgtgactcccc
acccctccaccctagaagccctgctgcttctgctttcactcccggtggaa
agaaaagaacctcgcacagctgcgacaggagcaaagccatctgtgacccg
acagccagcaaccgcaaacagttgcagaccagagatgagtcacgaaccat
ccttctgagctctgactgaactgccaaaccgaagaacagtgaccaacaga
tggctgtccttttcagccagtaagtttggaggaggtttgtaacatagtac
agccctaacacatgccggttcatctttccttcccagagtgcccactacac
acttgttaactgcgatccaaaaatcactccccaggaagctttcccggatg
gaaaaaggcagcctcctacacaaagttagcctccctcaaagcacagaagg
ggggccctgtctaacatggttctgagggcacagagacccctccttctcct
ccagctctctcttgcgcgcgctctctctctctctctctcacacacacaca
cacacacacacagagtcttccccatgcggagatgctcaggacttttcaaa
gcccagttacttacaaaataacacaaatgtctgtatcatttaggtttcta
ttgttgtggtaaataccatgaccaaaagcaattgcggaggaaaggattta
tctcactgtacagcttacagtccataatgaaggcagtcaggcaggaacct
gaaggtagactgagcgagccatagagagtgctgcttgctcctcgaggcct
gcttctaacctgcttctttaccatcctggacaacctgccagggtggcact
ggcttgagcctaggacacatcacgaatcaagaaacgcccctccacaagct
tacctacagccgtatagtggagaacttttctcagctgttttctctccaaa
gctctagcttgtcaagttaggcgaactaaccagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_153097805_153098963
seq2: B6Ng01-092L13.g_66_1199

seq1  GAATTCAGTCGTCCTTGCTCCATCCCGGAAGTTGCCTTACTCATCGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCGTCCTTGCTCCATCCCGGAAGTTGCCTTACTCATCGAAAT  50

seq1  TGCCCTATGGAGGGTTCAATATGGCCATATATTCTTCACAGCTCCTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTATGGAGGGTTCAATATGGCCATATATTCTTCACAGCTCCTACCT  100

seq1  TAAGTAGGTGGCGTCTATTTTCCCACCTCCTTGGATCTGGGGTGACTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGGTGGCGTCTATTTTCCCACCTCCTTGGATCTGGGGTGACTTTG  150

seq1  AGAGTTATGGGATCACGGGATATAGCAGAAGCAGCATCACGTGACTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATGGGATCACGGGATATAGCAGAAGCAGCATCACGTGACTCCCC  200

seq1  ACCCCTCCACCCTAGAAGCCCTGCTGCTTCTGCTTTCACTCCCGGTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCCACCCTAGAAGCCCTGCTGCTTCTGCTTTCACTCCCGGTGGAA  250

seq1  AGAAAAGAACCTCGCACAGCTGCGACAGGAGCAAAGCCATCTGTGACCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAACCTCGCACAGCTGCGACAGGAGCAAAGCCATCTGTGACCCG  300

seq1  ACAGCCAGCAACCGCAAACAGTTGCAGACCAGAGATGAGTCACGAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGCAACCGCAAACAGTTGCAGACCAGAGATGAGTCACGAACCAT  350

seq1  CCTTCTGAGCTCTGACTGAACTGCCAAACCGAAGAACAGTGACCAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAGCTCTGACTGAACTGCCAAACCGAAGAACAGTGACCAACAGA  400

seq1  TGGCTGTCCTTTTCAGCCAGTAAGTTTGGAGGAGGTTTGTAACATAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTTTTCAGCCAGTAAGTTTGGAGGAGGTTTGTAACATAGTAC  450

seq1  AGCCCTAACACATGCCGGTTCATCTTTCCTTCCCAGAGTGCCCACTACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAACACATGCCGGTTCATCTTTCCTTCCCAGAGTGCCCACTACAC  500

seq1  ACTTGTTAACTGCGATCCAAAAATCACTCCCCAGGAAGCTTTCCCGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTAACTGCGATCCAAAAATCACTCCCCAGGAAGCTTTCCCGGATG  550

seq1  GAAAAAGGCAGCCTCCTACACAAAGTTAGCCTCCCTCAAAGCACAGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGCAGCCTCCTACACAAAGTTAGCCTCCCTCAAAGCACAGAAGG  600

seq1  GGGGCCCTGTCTAACATGGTTCTGAGGGCACAGAGACCCCTCCTTCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCCTGTCTAACATGGTTCTGAGGGCACAGAGACCCCTCCTTCTCCT  650

seq1  CCAGCTCTCTCTTGCGCGCGCTCTCTCTCTCTCTCTCTCACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTCTCTTGCGCGCGCTCTCTCTCTCTCTCTCTCACACACACACA  700

seq1  CACACACACACAGAGTCTTCCCCATGCGGAGATGCTCAGGACTTTTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGAGTCTTCCCCATGCGGAGATGCTCAGGACTTTTCAAA  750

seq1  GCCCAGTTACTTACAAAATAACACAAATGTCTGTATCATTTAGGTTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTTACTTACAAAATAACACAAATGTCTGTATCATTTAGGTTTCTA  800

seq1  TTGTTGTGGTAAATACCATGACCAAAAGCAATTGCGGAGGAAAGGATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGGTAAATACCATGACCAAAAGCAATTGCGGAGGAAAGGATTTA  850

seq1  TCTCACTGTACAGCTTACAGTCCATAATGAAGGCAAGTCAGGGCAGGAAC  900
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  TCTCACTGTACAGCTTACAGTCCATAATGAAGGC-AGTCA-GGCAGGAAC  898

seq1  CTGAAGGTAAGAACTGAGGCGGAAGCCATAGAGGAGTGCTGCTTGCTCCT  950
      |||||||||   ||||| |||  ||||||||| |||||||||||||||||
seq2  CTGAAGGTA--GACTGA-GCG--AGCCATAGA-GAGTGCTGCTTGCTCCT  942

seq1  CGAGGCCTGCTTTCTTAACCTGCTTTCTTATACAATCCTGGACAACCTGC  1000
      ||||||||||||   |||||||| ||||| ||| ||||||||||||||||
seq2  CGAGGCCTGCTT--CTAACCTGC-TTCTT-TACCATCCTGGACAACCTGC  988

seq1  CAAGGGGTGGCACTGGCTTGAGCCTAGGACACCAATCACGAATCAAGAAA  1050
      ||  ||||||||||||||||||||||||||||  ||||||||||||| ||
seq2  CA--GGGTGGCACTGGCTTGAGCCTAGGACAC--ATCACGAATCAAG-AA  1033

seq1  ACGCCC--CCACAAGCTTACCTACAGGCCGGTATAGTGGAGACATTTTCT  1098
      ||||||  ||||||||||||||||||  | ||||||||||||  ||||||
seq2  ACGCCCCTCCACAAGCTTACCTACAG--CCGTATAGTGGAGAACTTTTCT  1081

seq1  CAGCTGTTTCTCTTCTCCCAGAAAGCTCTAGCTTGTACCAAGTTAGCAAA  1148
      ||||||||| || |||||   |||||||||||||||  ||||||||    
seq2  CAGCTGTTT-TC-TCTCC---AAAGCTCTAGCTTGT--CAAGTTAG-GCG  1123

seq1  AACTAACCAGT  1159
      |||||||||||
seq2  AACTAACCAGT  1134