BAC Information

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BAC

Clone NameB6Ng01-092N20
Chromosome1 (Build37)
Map Location 93,043,637 - 93,146,206
singlet/doubletdoublet
Overlap geneGm817, LOC665766, Ramp1
Upstream geneIqca, Cxcr7, Cops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1
Downstream geneUbe2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092N20.bB6Ng01-092N20.g
ACCDH904505DH904506
length1541,083
definitionDH904505|Mus musculus domesticus DNA, BAC clone: B6Ng01-092N20, 5' end.DH904506|Mus musculus domesticus DNA, BAC clone: B6Ng01-092N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,146,053 - 93,146,206)(93,043,637 - 93,044,720)
sequence
gcaagactcctagagaggtagggccttggaaagaggatattttctgtgga
aaagaacaaggagcgtcaggtttccagtgattttcttagcaattctgggg
aatgaatctcaggaggtctcacatgcaaagcactacctttgagctacccg
cccc
gaattccaagtccattgtagtcagtgaaaatggcagtgcgggtaccatct
gttctatctacagtgtatctgctgacagcatcagcacagataaataaagt
cagctcccaggacacctgcacagtggccacttgaagatctgcacaccgct
tcccagcatctacctgatgtcacccacataggttcactgcagtgtctttc
ctagatgctctcccctccctctttggatcagtagtggccacacagtcaaa
aagacaacttggtaggaagcagcagattgctcagctgtttgtcctccctc
atgagcaaccaggagttatcagaaccaaactctagattccatggaaacca
tatctttccaagaaagtatttctagctaatagccagtagagagtaccaag
tccagggctctgctgtattcaatccactccggtgcttggtgtctctgcct
tcttaagccaccaccatcccataaaacggtcatggatcaggtagtacagt
tcgttcagccaggttgacagtttgtaaaagactccatttgacttgttaaa
agatgcaccagccctgatagagcagaaccctagaagatagccatggccac
agcaataggatttgctctaatgggattcattggcttccttgtgactgatc
catattcctataaataccattattgtgggtggctgagtactttctcctca
tgaagaaaaaaaaaaaaaaaacaatatccttagtggttttttaagatgtt
tttctatttctcaattaaaatgatttttaaaaagtatcaagttcaagtct
caggttgggagcaagactgagtattgcaagagcaaccacactggggacag
aagttgtactggactcccatttatctaagcacagctcatctttgtcaaaa
tgaagtaccatttgtcagcctctcagccattgttctggctggtttatgtc
cacttggcataagctagagtcactggagaggagggaccttttttttttca
agacagggtttctctgcataggccctgactgtcctgaaactcacctctga
gacatgctggcctcgacccaaaattagctgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93146053_93146206
seq2: B6Ng01-092N20.b_55_208 (reverse)

seq1  GGGGCGGGTAGCTCAAAGGTAGTGCTTTGCATGTGAGACCTCCTGAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGGTAGCTCAAAGGTAGTGCTTTGCATGTGAGACCTCCTGAGATT  50

seq1  CATTCCCCAGAATTGCTAAGAAAATCACTGGAAACCTGACGCTCCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCCAGAATTGCTAAGAAAATCACTGGAAACCTGACGCTCCTTGTT  100

seq1  CTTTTCCACAGAAAATATCCTCTTTCCAAGGCCCTACCTCTCTAGGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCACAGAAAATATCCTCTTTCCAAGGCCCTACCTCTCTAGGAGTC  150

seq1  TTGC  154
      ||||
seq2  TTGC  154

seq1: chr1_93043637_93044720
seq2: B6Ng01-092N20.g_69_1151

seq1  GAATTCCAAGTCCATTGTAGTCAGTGAAAATGGCAGTGCGGGTACCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTCCATTGTAGTCAGTGAAAATGGCAGTGCGGGTACCATCT  50

seq1  GTTCTATCTACAGTGTATCTGCTGACAGCATCAGCACAGATAAATAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATCTACAGTGTATCTGCTGACAGCATCAGCACAGATAAATAAAGT  100

seq1  CAGCTCCCAGGACACCTGCACAGTGGCCACTTGAAGATCTGCACACCGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCCAGGACACCTGCACAGTGGCCACTTGAAGATCTGCACACCGCT  150

seq1  TCCCAGCATCTACCTGATGTCACCCACATAGGTTCACTGCAGTGTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCATCTACCTGATGTCACCCACATAGGTTCACTGCAGTGTCTTTC  200

seq1  CTAGATGCTCTCCCCTCCCTCTTTGGATCAGTAGTGGCCACACAGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGCTCTCCCCTCCCTCTTTGGATCAGTAGTGGCCACACAGTCAAA  250

seq1  AAGACAACTTGGTAGGAAGCAGCAGATTGCTCAGCTGTTTGTCCTCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACTTGGTAGGAAGCAGCAGATTGCTCAGCTGTTTGTCCTCCCTC  300

seq1  ATGAGCAACCAGGAGTTATCAGAACCAAACTCTAGATTCCATGGAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAACCAGGAGTTATCAGAACCAAACTCTAGATTCCATGGAAACCA  350

seq1  TATCTTTCCAAGAAAGTATTTCTAGCTAATAGCCAGTAGAGAGTACCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCCAAGAAAGTATTTCTAGCTAATAGCCAGTAGAGAGTACCAAG  400

seq1  TCCAGGGCTCTGCTGTATTCAATCCACTCCGGTGCTTGGTGTCTCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCTCTGCTGTATTCAATCCACTCCGGTGCTTGGTGTCTCTGCCT  450

seq1  TCTTAAGCCACCACCATCCCATAAAACGGTCATGGATCAGGTAGTACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCCACCACCATCCCATAAAACGGTCATGGATCAGGTAGTACAGT  500

seq1  TCGTTCAGCCAGGTTGACAGTTTGTAAAAGACTCCATTTGACTTGTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCAGCCAGGTTGACAGTTTGTAAAAGACTCCATTTGACTTGTTAAA  550

seq1  AGATGCACCAGCCCTGATAGAGCAGAACCCTAGAAGATAGCCATGGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACCAGCCCTGATAGAGCAGAACCCTAGAAGATAGCCATGGCCAC  600

seq1  AGCAATAGGATTTGCTCTAATGGGATTCATTGGCTTCCTTGTGACTGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGGATTTGCTCTAATGGGATTCATTGGCTTCCTTGTGACTGATC  650

seq1  CATATTCCTATAAATACCATTATTGTGGGTGGCTGAGTACTTTCTCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCCTATAAATACCATTATTGTGGGTGGCTGAGTACTTTCTCCTCA  700

seq1  TGAAGAAAAAAAAAAAAAAAACAATATCCTTAGTGGTTTTTTAAGATG-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAAGAAAAAAAAAAAAAAAACAATATCCTTAGTGGTTTTTTAAGATGTT  750

seq1  TTTCTATTTCTCAATTAAAATGATTTTTAAAAAGTATCAAGTTCAAGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTCTCAATTAAAATGATTTTTAAAAAGTATCAAGTTCAAGTCT  800

seq1  CAGGTTGGGAGCAAGACTGAGTATTGCAAGAGCAACCACACT-GGGACAG  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGGTTGGGAGCAAGACTGAGTATTGCAAGAGCAACCACACTGGGGACAG  850

seq1  AAGTTGTACTGGACTCCCATTTATCTAAGCACAGCTCATCTTTGTCAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTACTGGACTCCCATTTATCTAAGCACAGCTCATCTTTGTCAAAA  900

seq1  TTGAAGTACCATTTGTCAGCCCCTCAGCCATTGTTCTGGCTGGTTTTATG  948
       |||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  -TGAAGTACCATTTGTCAGCCTCTCAGCCATTGTTCTGGCTGG-TTTATG  948

seq1  TCCACTTGGCATAAGCTAGAGTCACTGGAGAGGAGGGAACCTTTTTTTTT  998
      ||||||||||||||||||||||||||||||||||||||  | ||||||||
seq2  TCCACTTGGCATAAGCTAGAGTCACTGGAGAGGAGGGA--CCTTTTTTTT  996

seq1  TTCAAGACAGGGTTTCTCTGCATA-GCCCTGACTGTCCTGGAACTCA-CT  1046
      |||||||||||||||||||||||| ||||||||||||||| |||||| ||
seq2  TTCAAGACAGGGTTTCTCTGCATAGGCCCTGACTGTCCTGAAACTCACCT  1046

seq1  CTGTAGACCAGGCTGGCCTCGAACCCAGAA--ATCTGCCT  1084
      ||| ||| || |||||||||| ||||| ||  | ||||||
seq2  CTG-AGA-CATGCTGGCCTCG-ACCCAAAATTAGCTGCCT  1083