BAC Information

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BAC

Clone NameB6Ng01-093F03
Chromosome1 (Build37)18 (Build37)
Map Location 103,140,158 - 103,140,30017,526,934 - 17,528,063
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneC230078M14Rik
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093F03.bB6Ng01-093F03.g
ACCDH904841DH904842
length9711,108
definitionDH904841|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F03, 5' end.DH904842|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,140,158 - 103,140,300)(17,526,934 - 17,528,063)
sequence
gaattccacaggtgctatcttagccagagacaggtttattacatgccttc
tggccagcctaagaaaggcagccttaaagccagtaaattttgaaaaactt
taagaggttgtccaggacaaacaggagaacacatctaattttcagaacac
ctcacaaaggctttattgtaatacactaatctggactctgaaaacccaga
aggtaagcaacttctgatgatctactttttacccagagctaccctgacat
aaaagataaacttaggaatttggagagggggtccctaactccacaggctg
aagtcttggtgcgggtctgtggtgattggttgaggcgtggttgtggcttg
agtggataaaaatgcttgtaccccgagaggtggtggatttgaagagagaa
gctgcctgagtaaactgctttaaggagaaccggtggttgcgttttccttg
ctggtcgagttggacgcaacaactaatatcaatgataatcattttaccat
gtacaaaatacaggaagttattccctttacctgactatattcctttctgt
tcaccaactctgccttggcactcttctcatcctcagactgatgagaagac
tgataactgtatttccatgaaatccacatgaatagacttttaataagagg
agatcatcaggtatctaactaattttatttaacataatttgtcattcagc
tttgtctacattgtcaaacaaagaggacttcagcatctctgtgttccaac
gtactctctgcatgggtgcttatctcattttcacttatccatcatgaata
cttctgcaataaacatagaagggcaaatatcttttcaatatgatctcatt
ccctttgagtacatacccatgagtaggattgctagatatcaatcatggta
tttctatttgtaattttctgaggaggtgcaattttgttttcaataagagc
catgctaatttacattatcgc
gaattctgcagttacgttgtgagggtttctaagaaaacatttacagaaga
tttttagtgaatgagattatatgtgttttctgattagccctgtacattat
tgaggactgactaaataactgcatcaaggtaaaagtgagactctttacta
caaagtcataagattatgagcatgttttgattataaaaggtttccaatat
catttgtaagattcttggaatgttacagttgtacagcttggaaaagagta
aagtagagggcaaaggtcatataatctatgtcccactactctggtgactt
ctttatgtgatatatttccagggaaagagaatattgtttatattcaggca
gccttcagaaggaattgtgttggctgtatttgaactcttaattctaagtc
tgagagttcagtttcctggtcctcatataattttattttattctctttct
ctgttgcctgacaaaggtttaaagtttggaggctgagacttggaaccatt
tcctggacattcacttcctatttataatctttatttatgctcctttatgt
tgtatgtctgtctgtatgtttcacacattttcttaccaattctctcttca
atctgtattgctgagatttccacaaaggtttataaatgcaagaaagttat
taagtaaaatgaacaaatttggtgatattacttttattagtagggtaaac
tagtgtgtttactactaaatattgatggaataagaaatgatctcaaatgt
aggtaaggatcttcatagaaagctcttaccttcgtgttaaatcagaaatt
ccaacaatacgttatttcttacattttttatcagaatattattttaaatg
gaattaataattttgaaaggtcaaaaagctttacttggaaatataatggg
agaatactttatcgatgaatcttagtcttatttagaaatctggttgaagt
gattacactattagagtactttgacattgggtgattgttctgatcaaatt
acagctataccaaagtggaggggataatcatcaccatctaaaatcttggt
tcaaatgatagacccatctttcaggtgaacaatgtagtcctctttaagta
gtaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_103140158_103140300
seq2: B6Ng01-093F03.b_359_514

seq1  CTGTGGTGATTGGTTGAGGCATGGCTGTGGCTTGAGTGGAT-AAAATGTT  49
      |||||||||||||||||||| ||| |||||||||||||||| |||||| |
seq2  CTGTGGTGATTGGTTGAGGCGTGGTTGTGGCTTGAGTGGATAAAAATGCT  50

seq1  TGTAGCCGGAGA------------GAAGAGAGAAGCTGCCTGAGTAAACT  87
      |||| || ||||            ||||||||||||||||||||||||||
seq2  TGTACCCCGAGAGGTGGTGGATTTGAAGAGAGAAGCTGCCTGAGTAAACT  100

seq1  GCTTTAAGAAGAATCAGTGGTTGCATTTTCCTTGCTGATCGAGTTGGAAG  137
      |||||||| |||| | |||||||| |||||||||||| |||||||||| |
seq2  GCTTTAAGGAGAACCGGTGGTTGCGTTTTCCTTGCTGGTCGAGTTGGACG  150

seq1  CAACAA  143
      ||||||
seq2  CAACAA  156

seq1: chr18_17526934_17528063
seq2: B6Ng01-093F03.g_68_1175

seq1  GAATTCTGCAGTTACGTTGTGAGGGTTTCTAAGAAAACATTTACAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGTTACGTTGTGAGGGTTTCTAAGAAAACATTTACAGAAGA  50

seq1  TTTTTAGTGAATGAGATTATATGTGTTTTCTGATTAGCCCTGTACATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTGAATGAGATTATATGTGTTTTCTGATTAGCCCTGTACATTAT  100

seq1  TGAGGACTGACTAAATAACTGCATCAAGGTAAAAGTGAGACTCTTTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTGACTAAATAACTGCATCAAGGTAAAAGTGAGACTCTTTACTA  150

seq1  CAAAGTCATAAGATTATGAGCATGTTTTGATTATAAAAGGTTTCCAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCATAAGATTATGAGCATGTTTTGATTATAAAAGGTTTCCAATAT  200

seq1  CATTTGTAAGATTCTTGGAATGTTACAGTTGTACAGCTTGGAAAAGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAAGATTCTTGGAATGTTACAGTTGTACAGCTTGGAAAAGAGTA  250

seq1  AAGTAGAGGGCAAAGGTCATATAATCTATGTCCCACTACTCTGGTGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGGGCAAAGGTCATATAATCTATGTCCCACTACTCTGGTGACTT  300

seq1  CTTTATGTGATATATTTCCAGGGAAAGAGAATATTGTTTATATTCAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTGATATATTTCCAGGGAAAGAGAATATTGTTTATATTCAGGCA  350

seq1  GCCTTCAGAAGGAATTGTGTTGGCTGTATTTGAACTCTTAATTCTAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGAAGGAATTGTGTTGGCTGTATTTGAACTCTTAATTCTAAGTC  400

seq1  TGAGAGTTCAGTTTCCTGGTCCTCATATAATTTTATTTTATTCTCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTCAGTTTCCTGGTCCTCATATAATTTTATTTTATTCTCTTTCT  450

seq1  CTGTTGCCTGACAAAGGTTTAAAGTTTGGAGGCTGAGACTTGGAACCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCCTGACAAAGGTTTAAAGTTTGGAGGCTGAGACTTGGAACCATT  500

seq1  TCCTGGACATTCACTTCCTATTTATAATCTTTATTTATGCTCCTTTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGACATTCACTTCCTATTTATAATCTTTATTTATGCTCCTTTATGT  550

seq1  TGTATGTCTGTCTGTATGTTTCACACATTTTCTTACCAATTCTCTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCTGTCTGTATGTTTCACACATTTTCTTACCAATTCTCTCTTCA  600

seq1  ATCTGTATTGCTGAGATTTCCACAAAGGTTTATAAATGCAAGAAAGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATTGCTGAGATTTCCACAAAGGTTTATAAATGCAAGAAAGTTAT  650

seq1  TAAGTAAAATGAACAAATTTGGTGATATTACTTTTATTAGTAGGGTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAATGAACAAATTTGGTGATATTACTTTTATTAGTAGGGTAAAC  700

seq1  TAGTGTGTTTACTACTAAATATTGATGGAATAAGAAATGATCTCAAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTTTACTACTAAATATTGATGGAATAAGAAATGATCTCAAATGT  750

seq1  AGGTAAGGATCTTCATAGAAAGCTCTTACCTTCGTGTTAAATCAGAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGATCTTCATAGAAAGCTCTTACCTTCGTGTTAAATCAGAAATT  800

seq1  CCAACAATACGTTATTTCTTACATTTTTTATCAGAATATTATTTTAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATACGTTATTTCTTACATTTTTTATCAGAATATTATTTTAAATG  850

seq1  GAATTAATAATTTTGAAAGGTCAAAAAGCTTTACTTGGAAATATAATGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATAATTTTGAAAGGTCAAAAAGCTTTACTTGGAAATATAATGGG  900

seq1  AGAATACTTTAATCGATGAATCTTAGTCTTATTTTAGAAATCT-GTTGAA  949
      |||||||||| |||||||||||||||||||| ||||||||||| ||||||
seq2  AGAATACTTT-ATCGATGAATCTTAGTCTTA-TTTAGAAATCTGGTTGAA  948

seq1  GTTGATTACACTATTAGAAGTACTTTGACATTGTGTGAGTGTTCTGATTC  999
      | ||||||||||||||| ||||||||||||||| |||| |||||||||  
seq2  G-TGATTACACTATTAG-AGTACTTTGACATTGGGTGATTGTTCTGAT--  994

seq1  ATAAATTAACAGCATATTACCAAAAAGTGAGTGGATAATCATCAACAATC  1049
        ||||| ||||| || |||||||  | ||| ||||||||||| || |||
seq2  -CAAATT-ACAGC-TA-TACCAAAGTG-GAGGGGATAATCATC-ACCATC  1038

seq1  ATAAAAATCTTTGGTTCAAAAATGAATAGACACATCATTTCATGTGAACA  1099
         |||||| |||||||  ||||| |||||| |||| ||||| |||||| 
seq2  --TAAAATC-TTGGTTC--AAATG-ATAGACCCATC-TTTCAGGTGAAC-  1080

seq1  AATGTTAGTTCCTCTTTAAAGTAGTAAATTT  1130
      |||| ||| |||||||| |||||||||||||
seq2  AATG-TAG-TCCTCTTT-AAGTAGTAAATTT  1108