BAC Information

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BAC

Clone NameB6Ng01-093F10
Chromosome1 (Build37)
Map Location 40,093,044 - 40,235,537
singlet/doubletdoublet
Overlap geneIl1r2
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4
Downstream geneIl1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093F10.bB6Ng01-093F10.g
ACCDH904855DH904856
length1,046198
definitionDH904855|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F10, 5' end.DH904856|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,093,044 - 40,094,108)(40,235,340 - 40,235,537)
sequence
gaattcatccatttctctaagatggcactgtcttcataagaaataccatt
ttgtgatttttttgtgatcagtctggtatttgtattactagtagtataca
gttagtagtttttctagttcctttcaatgtaaagggttttttttatttgt
ttgtttgtttggatggctttgtactcacttcaacagcacatatactaaca
tttggataatacaggatagactgtcatggtccctgcataataacatgcag
atttgtgaattctttcttactgtatagcccagggtagtctcaaattctcc
atcctcttgcctgagcctcagaagtgtagttacatgtgtgcactatccac
cctggctgagattttattaatatttctatttattccttgatatgttaatg
catttatttggtgtattttgagcagagccatctacacatcccttttctga
tcttattttaatggcaaatacgttgtagacttgcatgtgatattcagggt
gacgggatttttttttttaaatttctttggttagtcctataaattctaaa
tctactttctcctgttctgaacaccaatgtcattccctggtcacaaaaca
tacagcaaggctcagagttctactgaaccaccttgaatgatgtatgacca
ctgggaaggagttacggccttcttattagaccttactttgtcgtcattgt
tacttttacccttagagtggtcatgccaccaggttggcacatcattttgt
ttccttcagagtttttcagggttgctccttaaatttaactttttatactc
atataaaataatatctgttcttgagtcagttttactaaaccaaatagagt
cagccaaggaattcaagcttctttccctcctccaccattagcctcttgtc
ttctaggtaacttcaaaattaattgagggcaggggtggtggcacacacct
acgatcccaacactaaggggtacgcagggtcaagttctagctatctgggc
tacatgggtaagactatctttgaatgaagaagaacccgtctcaaaa
acagaactgagcaaactaaggaatccctgaaaagtttctgggatccaata
gagcaagtctctcccccctgaaaagagagtcagtgtaagacatctgggaa
tcaaggacacaatgcccaggatccaagttaacagccaccacctggtagct
actatatgggcaatattgagggttggataggagggaggtaaaagatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40093044_40094108
seq2: B6Ng01-093F10.b_49_1094

seq1  GAATTCATCCATTTCTCTAAGATGGCACTGTCTTCATAAGAAATACCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCATTTCTCTAAGATGGCACTGTCTTCATAAGAAATACCATT  50

seq1  TTGTGATTTTTTTGTGATCAGTCTGGTATTTGTATTACTAGTAGTATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTTTTTTGTGATCAGTCTGGTATTTGTATTACTAGTAGTATACA  100

seq1  GTTAGTAGTTTTTCTAGTTCCTTTCAATGTAAAGGGTTTTTTTTATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAGTTTTTCTAGTTCCTTTCAATGTAAAGGGTTTTTTTTATTTGT  150

seq1  TTGTTTGTTTGGATGGCTTTGTACTCACTTCAACAGCACATATACTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGGATGGCTTTGTACTCACTTCAACAGCACATATACTAACA  200

seq1  TTTGGATAATACAGGATAGACTGTCATGGTCCCTGCATAATAACATGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATAATACAGGATAGACTGTCATGGTCCCTGCATAATAACATGCAG  250

seq1  ATTTGTGAATTCTTTCTTACTGTATAGCCCAGGGTAGTCTCAAATTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAATTCTTTCTTACTGTATAGCCCAGGGTAGTCTCAAATTCTCC  300

seq1  ATCCTCTTGCCTGAGCCTCAGAAGTGTAGTTACATGTGTGCACTATCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTGCCTGAGCCTCAGAAGTGTAGTTACATGTGTGCACTATCCAC  350

seq1  CCTGGCTGAGATTTTATTAATATTTCTATTTATTCCTTGATATGTTAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGAGATTTTATTAATATTTCTATTTATTCCTTGATATGTTAATG  400

seq1  CATTTATTTGGTGTATTTTGAGCAGAGCCATCTACACATCCCTTTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTGGTGTATTTTGAGCAGAGCCATCTACACATCCCTTTTCTGA  450

seq1  TCTTATTTTAATGGCAAATACGTTGTAGACTTGCATGTGATATTCAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTAATGGCAAATACGTTGTAGACTTGCATGTGATATTCAGGGT  500

seq1  GACGGGATTTTTTTTTTTAAATTTCTTTGGTTAGTCCTATAAATTCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGATTTTTTTTTTTAAATTTCTTTGGTTAGTCCTATAAATTCTAAA  550

seq1  TCTACTTTCTCCTGTTCTGAACACCAATGTCATTCCCTGGTCACAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTCTCCTGTTCTGAACACCAATGTCATTCCCTGGTCACAAAACA  600

seq1  TACAGCAAGGCTCAGAGTTCTACTGAACCACCTTGAATGATGTATGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAAGGCTCAGAGTTCTACTGAACCACCTTGAATGATGTATGACCA  650

seq1  CTGGGAAGGAGTTACGGCCTTCTTATTAGACCTTACTTTGTCGTCATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGGAGTTACGGCCTTCTTATTAGACCTTACTTTGTCGTCATTGT  700

seq1  TACTTTTACCCTTAGAGTGGTCATGCCACCAGGTTGGCACATCATTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTACCCTTAGAGTGGTCATGCCACCAGGTTGGCACATCATTTTGT  750

seq1  TTCCTTCAGAGTTTTTCAGGGTTGCTCCTTAAATTTAACTTTTTATACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCAGAGTTTTTCAGGGTTGCTCCTTAAATTTAACTTTTTATACTC  800

seq1  ATATAAAATAATATCTGTTCTTGAGTCAGTTTTACTAAACCAAATAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATAATATCTGTTCTTGAGTCAGTTTTACTAAACCAAATAGAGT  850

seq1  CAGCCAAGGAATTCAAGCTTCTTTCCCTCCTCCACCATTAGCCTCTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGCCAAGGAATTCAAGCTTCTTTCCCTCCTCCACCATTAGCCTC-TTGT  899

seq1  CTTTCTAGGTAACTTTCAAAAATTAATTTGAGGGCCAGGGGTGGTGGCAC  950
      | |||||||||||||   |||||||| ||||||| |||||||||||||||
seq2  C-TTCTAGGTAACTT--CAAAATTAA-TTGAGGG-CAGGGGTGGTGGCAC  944

seq1  ACACCTACGATCCCAACACTAAGGGGGTTAACGCAGGGGTTCAAGTTCTA  1000
      ||||||||||||||||||||||||||    ||||||||  ||||||||||
seq2  ACACCTACGATCCCAACACTAAGGGG---TACGCAGGG--TCAAGTTCTA  989

seq1  GGCTATCCTGGGCTACCATGGGTTAAAGACTATCCTTGGAAATGTAGTAA  1050
       ||||| |||||||| |||||||  ||||||||| |||  |||| || ||
seq2  -GCTAT-CTGGGCTA-CATGGGT--AAGACTATCTTTG--AATGAAG-AA  1031

seq1  GAACCCGTCTCAAAA  1065
      |||||||||||||||
seq2  GAACCCGTCTCAAAA  1046

seq1: chr1_40235340_40235537
seq2: B6Ng01-093F10.g_76_273 (reverse)

seq1  CTATCTTTTACCTCCCTCCTATCCAACCCTCAATATTGCCCATATAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTTACCTCCCTCCTATCCAACCCTCAATATTGCCCATATAGTAG  50

seq1  CTACCAGGTGGTGGCTGTTAACTTGGATCCTGGGCATTGTGTCCTTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGGTGGTGGCTGTTAACTTGGATCCTGGGCATTGTGTCCTTGATT  100

seq1  CCCAGATGTCTTACACTGACTCTCTTTTCAGGGGGGAGAGACTTGCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGTCTTACACTGACTCTCTTTTCAGGGGGGAGAGACTTGCTCTA  150

seq1  TTGGATCCCAGAAACTTTTCAGGGATTCCTTAGTTTGCTCAGTTCTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCCCAGAAACTTTTCAGGGATTCCTTAGTTTGCTCAGTTCTGT  198