BAC Information

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BAC

Clone NameB6Ng01-093O13
Chromosome1 (Build37)
Map Location 7,433,277 - 7,586,099
singlet/doubletdoublet
Overlap genenone
Upstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
Downstream geneLOC665063, LOC665069, LOC100039408, Sntg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093O13.bB6Ng01-093O13.g
ACCDH905267DH905268
length1,0981,059
definitionDH905267|Mus musculus domesticus DNA, BAC clone: B6Ng01-093O13, 5' end.DH905268|Mus musculus domesticus DNA, BAC clone: B6Ng01-093O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,584,994 - 7,586,099)(7,433,277 - 7,434,329)
sequence
gaattctagtgttcttcaaaaatcactgattctacacacatcagaattgc
aactttcaaagaaaattgtaacaaattttaaaattttgaaggttataaaa
ctgttttgaatgctatacgtctgccatatcagttagcatttttctatcaa
atttatgtttcacaatctacatctagagactgtttcatgaatcttctcac
atagtctgaatttttagagactttctatgtattttacttatttaaattac
ggtaaaaatttactgtgttcaaattattacttgacattttagtaaatatt
tactcatttaattacatcagtgcatcacagaacgtaagctatgaccacaa
gtgattgagaggctactacaggacagacattttacatacagtttcagttt
aggcttctcaataatcctgttcatcttacaagtataggaacagtatttat
taggagaatcctgctacatgtgtagaagctccctatgacagccagataaa
atgttgattggaaaggtatctcattgtacagaatctatgcaatatggatt
tgtacacttcattcagggcttctgttcataaaaattgtgaaacaaagaga
aaagccaatatttttttaatggagtccatttgggggaaaggctaagagaa
acagcctctgacatccgctatttaattgtatttaagacatattccatgca
tacacaacactgttaaggtggccggaaaccagaaactagattggtcactg
gcttatagtaaatgcttttcctatcagtacactaaagaagtatagcaaaa
tgacttctaaagatatcaacaagctcccatgcattataagcatcaatgtt
ccataaattagagcatctttaaaccctcatcagagaaacttttctttttt
tgcggtatatgggaactaacacagagatccaaattggacaatgtgcagtg
ttaaagactttggacactctgtcataaatgggatgtcttcatcaaatccc
tcttctcaagctcaatgttctacaccaagaggaggttaaagaaaaattta
agagtcagagatagtaaatgatcctaagaaaaaagtagctctacactg

gaattctgctgcttgtgggagtgtaaagttgtacaggcactaaggaaatc
agtgtggtggttcttctggaagatggaaatcgatttacatcaagatagta
gctgtcttggccatacatccaaatgatgctttatcctacctcaggaatac
ttgctgtatcatgcttatttcagctctagtcataatatcagaaattggaa
acagcctaggtccttcaacatataggtggataatgaatatgatcttcaga
agagagggttattagcttattaaataattctgttgctaatactgtatttc
atagaaataatcattaataataaattctagagaagttattgttgcactaa
ataaaataaaagtggacaattgtttcacactgataacatattgcattagc
atgttactcaggatttataaataactatccaaaatatcttttaagatctt
taaaagatacctcgtggctattgcctaaagatatgctataaaatcccaca
gagaaggcttttaatgtttctattggtagctctttgaaagggcaaggaac
atatattttatgtgacaaattccacatgcttcacagcagaaggttatacc
caaccaggtataaactttattttataaaatatagcaacttaaagtcgaaa
catgctataaccaggcagcttttattagatattttcaaacattgaatatt
ttaactgacctaatgtataagttagtataggaaaaatagttgttttttct
gttctatataatctctttacatcagaacttataaatttattgcatatgat
taaataatcattaacacagattagcttaaaacttataataaaacgatgat
tattgatttaataatcaatacataggtatctaaataatatatatatatat
tatatttattatatatgtatattatatcagctaaattaggcctgctacat
catgtgttttgtaggagcctagagaaagtacccagaagctgaaaggggtc
tggccaccctactaggaaaaaacaataatatgaacataaccgtaccctcc
aaactcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_7584994_7586099
seq2: B6Ng01-093O13.b_49_1146 (reverse)

seq1  CAGTGTAGAAGCTACTGTTTTCTTAGAGTCATTTACTATCTCTGGCTCTT  50
      |||||||| ||||||| |||||||||  |||||||||||||||| |||||
seq2  CAGTGTAG-AGCTACTTTTTTCTTAGGATCATTTACTATCTCTGACTCTT  49

seq1  AAATTTTTTCTTTTAACCTCCTCTTTGGTGTAGAACATTGAGCCTTGAGA  100
      ||||||||   |||||||||||| |||||||||||||||||| |||||||
seq2  AAATTTTT--CTTTAACCTCCTC-TTGGTGTAGAACATTGAG-CTTGAGA  95

seq1  AGAGGGATTTGATGAAGACATCCCATTTATGACAGAGTGTTCCAAAGTCT  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAGGGATTTGATGAAGACATCCCATTTATGACAGAGTG-TCCAAAGTCT  144

seq1  TTAACACTGCACATTGTCCAATTTTGGATCTCTGTGTTAGTTCCCATATA  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAACACTGCACATTGTCCAA-TTTGGATCTCTGTGTTAGTTCCCATATA  193

seq1  CCGCAAAAAAAAGAAAAGTTTCTCTGATGAGGGTTTAAAGATGCTCTAAT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGC-AAAAAAAGAAAAGTTTCTCTGATGAGGGTTTAAAGATGCTCTAAT  242

seq1  TTATGGAACATTGATGCTTATAATGCATGGGAGCTTGTTGATATCTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAACATTGATGCTTATAATGCATGGGAGCTTGTTGATATCTTTAG  292

seq1  AAGTCATTTTGCTATACTTCTTTAGTGTACTGATAGGAAAAGCATTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTTTGCTATACTTCTTTAGTGTACTGATAGGAAAAGCATTTACT  342

seq1  ATAAGCCAGTGACCAATCTAGTTTCTGGTTTCCGGCCACCTTAACAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCAGTGACCAATCTAGTTTCTGGTTTCCGGCCACCTTAACAGTGT  392

seq1  TGTGTATGCATGGAATATGTCTTAAATACAATTAAATAGCGGATGTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGCATGGAATATGTCTTAAATACAATTAAATAGCGGATGTCAGA  442

seq1  GGCTGTTTCTCTTAGCCTTTCCCCCAAATGGACTCCATTAAAAAAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTCTCTTAGCCTTTCCCCCAAATGGACTCCATTAAAAAAATATT  492

seq1  GGCTTTTCTCTTTGTTTCACAATTTTTATGAACAGAAGCCCTGAATGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCTCTTTGTTTCACAATTTTTATGAACAGAAGCCCTGAATGAAG  542

seq1  TGTACAAATCCATATTGCATAGATTCTGTACAATGAGATACCTTTCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAATCCATATTGCATAGATTCTGTACAATGAGATACCTTTCCAAT  592

seq1  CAACATTTTATCTGGCTGTCATAGGGAGCTTCTACACATGTAGCAGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTTATCTGGCTGTCATAGGGAGCTTCTACACATGTAGCAGGATT  642

seq1  CTCCTAATAAATACTGTTCCTATACTTGTAAGATGAACAGGATTATTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAATAAATACTGTTCCTATACTTGTAAGATGAACAGGATTATTGAG  692

seq1  AAGCCTAAACTGAAACTGTATGTAAAATGTCTGTCCTGTAGTAGCCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAAACTGAAACTGTATGTAAAATGTCTGTCCTGTAGTAGCCTCTC  742

seq1  AATCACTTGTGGTCATAGCTTACGTTCTGTGATGCACTGATGTAATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTGTGGTCATAGCTTACGTTCTGTGATGCACTGATGTAATTAAA  792

seq1  TGAGTAAATATTTACTAAAATGTCAAGTAATAATTTGAACACAGTAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAATATTTACTAAAATGTCAAGTAATAATTTGAACACAGTAAATT  842

seq1  TTTACCGTAATTTAAATAAGTAAAATACATAGAAAGTCTCTAAAAATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCGTAATTTAAATAAGTAAAATACATAGAAAGTCTCTAAAAATTCA  892

seq1  GACTATGTGAGAAGATTCATGAAACAGTCTCTAGATGTAGATTGTGAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGTGAGAAGATTCATGAAACAGTCTCTAGATGTAGATTGTGAAAC  942

seq1  ATAAATTTGATAGAAAAATGCTAACTGATATGGCAGACGTATAGCATTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTGATAGAAAAATGCTAACTGATATGGCAGACGTATAGCATTCA  992

seq1  AAACAGTTTTATAACCTTCAAAATTTTAAAATTTGTTACAATTTTCTTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTTATAACCTTCAAAATTTTAAAATTTGTTACAATTTTCTTTG  1042

seq1  AAAGTTGCAATTCTGATGTGTGTAGAATCAGTGATTTTTGAAGAACACTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGCAATTCTGATGTGTGTAGAATCAGTGATTTTTGAAGAACACTA  1092

seq1  GAATTC  1106
      ||||||
seq2  GAATTC  1098


seq1: chr1_7433277_7434329
seq2: B6Ng01-093O13.g_69_1127

seq1  GAATTCTGCTGCTTGTGGGAGTGTAAAGTTGTACAGGCACTAAGGAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGCTTGTGGGAGTGTAAAGTTGTACAGGCACTAAGGAAATC  50

seq1  AGTGTGGTGGTTCTTCTGGAAGATGGAAATCGATTTACATCAAGATAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTGGTTCTTCTGGAAGATGGAAATCGATTTACATCAAGATAGTA  100

seq1  GCTGTCTTGGCCATACATCCAAATGATGCTTTATCCTACCTCAGGAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTGGCCATACATCCAAATGATGCTTTATCCTACCTCAGGAATAC  150

seq1  TTGCTGTATCATGCTTATTTCAGCTCTAGTCATAATATCAGAAATTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTATCATGCTTATTTCAGCTCTAGTCATAATATCAGAAATTGGAA  200

seq1  ACAGCCTAGGTCCTTCAACATATAGGTGGATAATGAATATGATCTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTAGGTCCTTCAACATATAGGTGGATAATGAATATGATCTTCAGA  250

seq1  AGAGAGGGTTATTAGCTTATTAAATAATTCTGTTGCTAATACTGTATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGTTATTAGCTTATTAAATAATTCTGTTGCTAATACTGTATTTC  300

seq1  ATAGAAATAATCATTAATAATAAATTCTAGAGAAGTTATTGTTGCACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATAATCATTAATAATAAATTCTAGAGAAGTTATTGTTGCACTAA  350

seq1  ATAAAATAAAAGTGGACAATTGTTTCACACTGATAACATATTGCATTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAAGTGGACAATTGTTTCACACTGATAACATATTGCATTAGC  400

seq1  ATGTTACTCAGGATTTATAAATAACTATCCAAAATATCTTTTAAGATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACTCAGGATTTATAAATAACTATCCAAAATATCTTTTAAGATCTT  450

seq1  TAAAAGATACCTCGTGGCTATTGCCTAAAGATATGCTATAAAATCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATACCTCGTGGCTATTGCCTAAAGATATGCTATAAAATCCCACA  500

seq1  GAGAAGGCTTTTAATGTTTCTATTGGTAGCTCTTTGAAAGGGCAAGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCTTTTAATGTTTCTATTGGTAGCTCTTTGAAAGGGCAAGGAAC  550

seq1  ATATATTTTATGTGACAAATTCCACATGCTTCACAGCAGAAGGTTATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTATGTGACAAATTCCACATGCTTCACAGCAGAAGGTTATACC  600

seq1  CAACCAGGTATAAACTTTATTTTATAAAATATAGCAACTTAAAGTCGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGGTATAAACTTTATTTTATAAAATATAGCAACTTAAAGTCGAAA  650

seq1  CATGCTATAACCAGGCAGCTTTTATTAGATATTTTCAAACATTGAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTATAACCAGGCAGCTTTTATTAGATATTTTCAAACATTGAATATT  700

seq1  TTAACTGACCTAATGTATAAGTTAGTATAGGAAAAATAGTTG-TTTTTCT  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAACTGACCTAATGTATAAGTTAGTATAGGAAAAATAGTTGTTTTTTCT  750

seq1  GTTCTATATAATCTCTTTACATCAGAACTTATAAATTTATTGCATATGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATAATCTCTTTACATCAGAACTTATAAATTTATTGCATATGAT  800

seq1  TAAATAATCATTAACACAGATTTAGCTTAAAACTTATAATAAAACGATGA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAAATAATCATTAACACAGA-TTAGCTTAAAACTTATAATAAAACGATGA  849

seq1  TTATTGATTTAATAATCAATACATAGGTAATCTAAATAATATATATATAT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTATTGATTTAATAATCAATACATAGGT-ATCTAAATAATATATATATAT  898

seq1  ATTATATTAATTATATATGTATA-TATATCAGCTAAATTAGGTCTGCTAC  948
      |||||||| |||||||||||||| |||||||||||||||||| |||||||
seq2  ATTATATTTATTATATATGTATATTATATCAGCTAAATTAGGCCTGCTAC  948

seq1  ATCATGTG-TTTGTAGGAG-CTAGAGAAAGTACCCAAGAGCTG-AAGGGG  995
      |||||||| |||||||||| ||||||||||||||||  ||||| ||||||
seq2  ATCATGTGTTTTGTAGGAGCCTAGAGAAAGTACCCAGAAGCTGAAAGGGG  998

seq1  TCT-GCTACCCTA-TAGG-AGAAACAATAATATGAAC-TAACCAGTACCC  1041
      ||| || |||||| |||| | |||||||||||||||| ||||| ||||||
seq2  TCTGGCCACCCTACTAGGAAAAAACAATAATATGAACATAACC-GTACCC  1047

seq1  TCAGAACTCGTG  1053
      ||  ||||||||
seq2  TCCAAACTCGTG  1059


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