BAC Information

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BAC

Clone NameB6Ng01-093O23
Chromosome5 (Build37)1 (Build37)
Map Location 85,420,900 - 85,421,98934,527,297 - 34,527,352
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEpha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093O23.bB6Ng01-093O23.g
ACCDH905285DH905286
length1,09662
definitionDH905285|Mus musculus domesticus DNA, BAC clone: B6Ng01-093O23, 5' end.DH905286|Mus musculus domesticus DNA, BAC clone: B6Ng01-093O23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,420,900 - 85,421,989)(34,527,297 - 34,527,352)
sequence
gaattcaaataacaaaatacgtatttttatatagtattattatataccct
gtagattttttttttgcaagataggtcctataactaactaagcattgggg
cctgctctgcagttgctttctagaaatgagctgtgtcatctatgtaaatt
ttgttgaatattgtccagaatatggcagtaaatatgaatacacagatata
tcttaggatgttgattttatttcatttgaatatatccccagcaagaagca
tgttgcattcatattatatagtcgatctagttttagagttttatcttctt
cagtagaatattatatgactatcagaataggcatgtgtatcagcagtgca
caaagattccctctttcaatacttattgactgcttgttactgttttatac
ttcaattggcatataattaaacataacttgatacatataaaattaaaaat
gactatcaaaatgatatagggtttttattgttaatccaattttattaatg
tacatgttttccactgaatagagaaaaaataagtaatgcctatttatagt
tgtacatcagaaagtgaatttattggcttacttagacaaatacctacttc
agctggatggactaagaatctaaaggcacagagtacaaatcacgtcttgc
caccatagcatattgagaattaggagcaagaaacttagcaaatgctgtaa
tctgtctttgctcccagtgagacagtgaaagtattttactaaattctcca
ataactgaggagactgcatctaaaacactctatacttatatatgctgagt
acattaagtaaatgagaatacttcttaacaaagacaaaccaaaccccaaa
tgaattttttaaacaaactattatgtagtagtagaaggtaaagtacagat
tatcttatttatatagttttatttggaggggtagaataatgcaattagaa
actgggtggactttaattcaaatttcagataatattaagcacatatttaa
cactttacttcatgggaaaatttagtggacaaatgctggttattaattgt
ggaaaagtaagcctgcttttcattccttatggatacaacccatggg
aagaagaaaggaaggaagagaggaagaaagaaaggaaggagggagggagg
gagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85420900_85421989
seq2: B6Ng01-093O23.b_49_1144

seq1  GAATTCAAATAACAAAATACGTATTTTTATATAGTATTATTATATACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAACAAAATACGTATTTTTATATAGTATTATTATATACCCT  50

seq1  GTAGATTTTTTTTTTGCAAGATAGGTCCTATAACTAACTAAGCATTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTTTTTTTTGCAAGATAGGTCCTATAACTAACTAAGCATTGGGG  100

seq1  CCTGCTCTGCAGTTGCTTTCTAGAAATGAGCTGTGTCATCTATGTAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTGCAGTTGCTTTCTAGAAATGAGCTGTGTCATCTATGTAAATT  150

seq1  TTGTTGAATATTGTCCAGAATATGGCAGTAAATATGAATACACAGATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAATATTGTCCAGAATATGGCAGTAAATATGAATACACAGATATA  200

seq1  TCTTAGGATGTTGATTTTATTTCATTTGAATATATCCCCAGCAAGAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGATGTTGATTTTATTTCATTTGAATATATCCCCAGCAAGAAGCA  250

seq1  TGTTGCATTCATATTATATAGTCGATCTAGTTTTAGAGTTTTATCTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATTCATATTATATAGTCGATCTAGTTTTAGAGTTTTATCTTCTT  300

seq1  CAGTAGAATATTATATGACTATCAGAATAGGCATGTGTATCAGCAGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAATATTATATGACTATCAGAATAGGCATGTGTATCAGCAGTGCA  350

seq1  CAAAGATTCCCTCTTTCAATACTTATTGACTGCTTGTTACTGTTTTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTCCCTCTTTCAATACTTATTGACTGCTTGTTACTGTTTTATAC  400

seq1  TTCAATTGGCATATAATTAAACATAACTTGATACATATAAAATTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTGGCATATAATTAAACATAACTTGATACATATAAAATTAAAAAT  450

seq1  GACTATCAAAATGATATAGGGTTTTTATTGTTAATCCAATTTTATTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCAAAATGATATAGGGTTTTTATTGTTAATCCAATTTTATTAATG  500

seq1  TACATGTTTTCCACTGAATAGAGAAAAAATAAGTAATGCCTATTTATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTTTCCACTGAATAGAGAAAAAATAAGTAATGCCTATTTATAGT  550

seq1  TGTACATCAGAAAGTGAATTTATTGGCTTACTTAGACAAATACCTACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATCAGAAAGTGAATTTATTGGCTTACTTAGACAAATACCTACTTC  600

seq1  AGCTGGATGGACTAAGAATCTAAAGGCACAGAGTACAAATCACGTCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATGGACTAAGAATCTAAAGGCACAGAGTACAAATCACGTCTTGC  650

seq1  CACCATAGCATATTGAGAATTAGGAGCAAGAAACTTAGCAAATGCTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAGCATATTGAGAATTAGGAGCAAGAAACTTAGCAAATGCTGTAA  700

seq1  TCTGTCTTTGCTCCCAGTGAGACAGTGAAAGTATTTTACTAAATTCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTGCTCCCAGTGAGACAGTGAAAGTATTTTACTAAATTCTCCA  750

seq1  ATAACTGAGGAGACTGCATCTAAAACACTCTATACTTATATATGCTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGAGGAGACTGCATCTAAAACACTCTATACTTATATATGCTGAGT  800

seq1  ACATTAAGTAAATGAGAATACTTCTTAACAAAGACAAACCAAACCCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAGTAAATGAGAATACTTCTTAACAAAGACAAACCAAACCCCAAA  850

seq1  TGAATTTTTTAAACAAACTATTATGTAGTAGTAGAAGGTAAAGTACAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTTAAACAAACTATTATGTAGTAGTAGAAGGTAAAGTACAGAT  900

seq1  TATCTTATTTATATAGTTTTTATTTTGAGGTGTAGAATAATGCAATTAGA  950
      |||||||||||||||| |||||||| |||| |||||||||||||||||||
seq2  TATCTTATTTATATAG-TTTTATTTGGAGGGGTAGAATAATGCAATTAGA  949

seq1  AACTGG--TGACTTTAATTCAAATTTCAGATAATATTAAGCACATATTTA  998
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGTGGACTTTAATTCAAATTTCAGATAATATTAAGCACATATTTA  999

seq1  ACAC-TTACTCAATGG--AAAATTAGTGACAAAATGCT-GTTATTAATTG  1044
      |||| |||||  ||||  ||| ||||||   ||||||| |||||||||||
seq2  ACACTTTACTTCATGGGAAAATTTAGTGGACAAATGCTGGTTATTAATTG  1049

seq1  T-GAAAAGTAAG-CTGCTTTTTCATTTCCCTATTGATACAA-CCATGGG  1090
      | |||||||||| |||| |||||| |||| ||| ||||||| |||||||
seq2  TGGAAAAGTAAGCCTGC-TTTTCA-TTCCTTATGGATACAACCCATGGG  1096

seq1: chr1_34527297_34527352
seq2: B6Ng01-093O23.g_80_138 (reverse)

seq1  CCTCCCTCCCTCCCTCCCTCCCTCCCT-CTTTCTTTCTTCCTCTCTT--G  47
      ||||||||||||||||||||||||| | |||||||||||||||||||   
seq2  CCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTTCTTTCTTCCTCTCTTCCT  50

seq1  TTCTTTCTT  56
      | |||||||
seq2  TCCTTTCTT  59