BAC Information

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BAC

Clone NameB6Ng01-093P15
Chromosome1 (Build37)
Map Location 22,009,458 - 22,170,948
singlet/doubletdoublet
Overlap geneLOC435612
Upstream geneTram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
Downstream geneLOC100040338, Rims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093P15.bB6Ng01-093P15.g
ACCDH905317DH905318
length1,0031,086
definitionDH905317|Mus musculus domesticus DNA, BAC clone: B6Ng01-093P15, 5' end.DH905318|Mus musculus domesticus DNA, BAC clone: B6Ng01-093P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,009,458 - 22,010,456)(22,169,860 - 22,170,948)
sequence
gaattccattagtattcagtgctagactgtgcaaaagtaaataatatagt
ttgtgtaaatagttttgctcgctctatttgaaagcattcagtgacaaaat
gacatgtaagttctgatgatgtttatttggggttctcagaatggccaggg
aatggaatgagattgaaagctactattaatgagactataaaataaggata
ataatttttttcttaatctgcccttaattgagggtaatcttgtttggtag
agtattgccttgatatttctgtgctttatatatatttttatatgaatttt
taatatattgttctgtatttagtgaacataatcaagaagtaatcttcaat
gagcactaaaaagaaaattcaaattcataatatgggtatcccccaaaatt
agaaaattcctaatctatactagcatctttgtacagtcagtatagacctg
attttgaataagtgattttgaataagtcagccctaatgtttcttttttaa
atcaatttactttttacactccatattccattcccaaccctcccccgatt
caccctctaactgctccacatctcaaatctcctccccaccacaccccttc
tccacatgaatgcacccatcctccaccccacctgccctctcaactctctg
gggcctccagtctcttgagggttaggacctggatgtcctctactgtatgc
gtgctgagggcttcatatcagctggtgtatgctgtctgtttggtgatcta
gtgtttgagagatctcaggggaacagattaattgagactgctggtcctcc
tacaagatcacccttctcagcttttttcagccttccctaactcaacagca
ggggtcagctgcttctgtccatgggtgggagaggggaccaggaacctgat
ctggtattgggagaggtaaaggactgaagccctgagggccagcagaaata
atggaaacagccaatctcaggaattaggaggttgggggtgaccctccaga
atg
gaattctggcagacactgtcgtaagcaagtggtaagaggtcccagtaata
ataagacaaatggaatcgtgtgtcggcctattagacttcaagaggataaa
cacattatcacttctctggctcttcaagagagaagcaaatgcaccatgag
taagacaagctgtactcatacagaggacgttctcaaaaacacaggatctg
catcttcaacaggattgggacaatggtttcaaggagaacttagagacatg
agagaagcacaaacagatggagcaacttattccaacacttgacttggaac
tgggtctttttgttctaaagattatttaaataattgcttcacacacacga
tctgtacaattacatgaaaataataaatctgtgatcattttctgatattc
ttggattttggtaatataaggtactgtcttcatttttaataaacattaat
ttgtgtacgtggagtgatccttttattctcatatacatgagaaaaagacc
cttgttctgtttttacaacttttctctatattcaaaattgcttacataca
cttaattttttttaatgctctgctaattagaaatatcagtctagtgtcta
ttcacacaagtgtgaaatgcaagtttttactatagcctttatcctataaa
gtactgtgtatgaggttttaaatttttattattcaagaaaacctaaccaa
atagtgagacttgaatatctgtagtcacagggagagcatcccatatttcg
acattgggcaagtctctgttttaaggactgtccctatatggtaaacatgc
ctgctctgcagcatccataaaactgccttaggggttcttctcacctatct
gttttatagctatcaacgtaaagtacacccagtccttagttattatctct
gaaacttatatactcctggggcactgctgcctggaaactcatattttact
tgactccataccaagatttgctcaaacttctctctctctgagcttcttct
taatggttctcttagacttttccctgctaatagcctcttaaatacaaaat
tctttctgggtttcaagttcggatttatcaggaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_22009458_22010456
seq2: B6Ng01-093P15.b_48_1044

seq1  GAATTCCATTAGTATTCAGTGCTAGACTGTGCAAAAGTAAATAATATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAGTATTCAGTGCTAGACTGTGCAAAAGTAAATAATATAGT  50

seq1  TTGTGTAAATAGTTTTGCTCGCTCTATTTGAAAGCATTCAGTGACAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAAATAGTTTTGCTCGCTCTATTTGAAAGCATTCAGTGACAAAAT  100

seq1  GACATGTAAGTTCTGATGATGTTTATTTGGGGTTCTCAGAATGGCCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTAAGTTCTGATGATGTTTATTTGGGGTTCTCAGAATGGCCAGGG  150

seq1  AATGGAATGAGATTGAAAGCTACTATTAATGAGACTATAAAATAAGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATGAGATTGAAAGCTACTATTAATGAGACTATAAAATAAGGATA  200

seq1  ATAATTTTTTTCTTAATCTGCCCTTAATTGAGGGTAATCTTGTTTGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTTTCTTAATCTGCCCTTAATTGAGGGTAATCTTGTTTGGTAG  250

seq1  AGTATTGCCTTGATATTTCTGTGCTTTATATATATTTTTATATGAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGCCTTGATATTTCTGTGCTTTATATATATTTTTATATGAATTTT  300

seq1  TAATATATTGTTCTGTATTTAGTGAACATAATCAAGAAGTAATCTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTGTTCTGTATTTAGTGAACATAATCAAGAAGTAATCTTCAAT  350

seq1  GAGCACTAAAAAGAAAATTCAAATTCATAATATGGGTATCCCCCAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTAAAAAGAAAATTCAAATTCATAATATGGGTATCCCCCAAAATT  400

seq1  AGAAAATTCCTAATCTATACTAGCATCTTTGTACAGTCAGTATAGACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCCTAATCTATACTAGCATCTTTGTACAGTCAGTATAGACCTG  450

seq1  ATTTTGAATAAGTGATTTTGAATAAGTCAGCCCTAATGTTTCTTTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAATAAGTGATTTTGAATAAGTCAGCCCTAATGTTTCTTTTTTAA  500

seq1  ATCAATTTACTTTTTACACTCCATATTCCATTCCCAACCCTCCCCCGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTACTTTTTACACTCCATATTCCATTCCCAACCCTCCCCCGATT  550

seq1  CACCCTCTAACTGCTCCACATCTCAAATCTCCTCCCCACCACACCCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTAACTGCTCCACATCTCAAATCTCCTCCCCACCACACCCCTTC  600

seq1  TCCACATGAATGCACCCATCCTCCACCCCACCTGCCCTCTCAACTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGAATGCACCCATCCTCCACCCCACCTGCCCTCTCAACTCTCTG  650

seq1  GGGCCTCCAGTCTCTTGAGGGTTAGGACCTGGATGTCCTCTACTGTATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCCAGTCTCTTGAGGGTTAGGACCTGGATGTCCTCTACTGTATGC  700

seq1  GTGCTGAGGGCTTCATATCAGCTGGTGTATGCTGTCTGTTTGGTGATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGGGCTTCATATCAGCTGGTGTATGCTGTCTGTTTGGTGATCTA  750

seq1  GTGTTTGAGAGATCTCAGGGGAACAGATTAATTGAGACTGCTGGTCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGAGAGATCTCAGGGGAACAGATTAATTGAGACTGCTGGTCCTCC  800

seq1  TACAAGATCACCCTTCTCAGCTTTTTTCAGCCTTCCCTAACTCAACAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGATCACCCTTCTCAGCTTTTTTCAGCCTTCCCTAACTCAACAGCA  850

seq1  GGGGTCAGCTGCTTCTGTCCATGGGTGGGAGAGGGGACCAGGGAACCTGA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGGTCAGCTGCTTCTGTCCATGGGTGGGAGAGGGGACCA-GGAACCTGA  899

seq1  TCTGGTATTGGGAGAGGTAAAAGGACTGAAGCCCTGAGGGCCAGCAGAAA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTGGTATTGGGAGAGGT-AAAGGACTGAAGCCCTGAGGGCCAGCAGAAA  948

seq1  TAATGGAAACAGCCAATCTCAGGAATTAGGAGGTTGGGGGTGACCCTCC  999
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAAACAGCCAATCTCAGGAATTAGGAGGTTGGGGGTGACCCTCC  997

seq1: chr1_22169860_22170948
seq2: B6Ng01-093P15.g_68_1153 (reverse)

seq1  GGGTCCTGATTAGATCTGAACTTGAAA-CCAG-AAGATATTTGTATTTTA  48
      ||||||||| || ||| |||||||||| |||| ||||  ||||||||| |
seq2  GGGTCCTGA-TAAATCCGAACTTGAAACCCAGAAAGAATTTTGTATTTAA  49

seq1  GAGGCTATTAGCAGGGAAAAAGTCTAAGAGAACCATTAAGAGGAGGCTCA  98
      |||||||||||||||| |||||||||||||||||||||||| || |||||
seq2  GAGGCTATTAGCAGGG-AAAAGTCTAAGAGAACCATTAAGAAGAAGCTCA  98

seq1  GGAGGAGGAGGAGGAGTGTGAGCAAATCTTGGTATGGAGTCAAGTAAAAT  148
          |||   ||| ||| ||||||||||||||||||||||||||||||||
seq2  ----GAGAGAGAGAAGTTTGAGCAAATCTTGGTATGGAGTCAAGTAAAAT  144

seq1  ATGAGTTTCCAGGCAGCAGTG-CCCAGGAGTATATAAGTTTCAGAGATAA  197
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGAGTTTCCAGGCAGCAGTGCCCCAGGAGTATATAAGTTTCAGAGATAA  194

seq1  TAACTAAGGACTGGGTGTACTTTACGTTGATAGCTATAAAACAGATAGGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGGACTGGGTGTACTTTACGTTGATAGCTATAAAACAGATAGGT  244

seq1  GAGAAGAACCCCTAAGGCAGTTTTATGGATGCTGCAGAGCAGGCATGTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAACCCCTAAGGCAGTTTTATGGATGCTGCAGAGCAGGCATGTTT  294

seq1  ACCATATAGGGACAGTCCTTAAAACAGAGACTTGCCCAATGTCGAAATAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATAGGGACAGTCCTTAAAACAGAGACTTGCCCAATGTCGAAATAT  344

seq1  GGGATGCTCTCCCTGTGACTACAGATATTCAAGTCTCACTATTTGGTTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTCTCCCTGTGACTACAGATATTCAAGTCTCACTATTTGGTTAG  394

seq1  GTTTTCTTGAATAATAAAAATTTAAAACCTCATACACAGTACTTTATAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTGAATAATAAAAATTTAAAACCTCATACACAGTACTTTATAGG  444

seq1  ATAAAGGCTATAGTAAAAACTTGCATTTCACACTTGTGTGAATAGACACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGCTATAGTAAAAACTTGCATTTCACACTTGTGTGAATAGACACT  494

seq1  AGACTGATATTTCTAATTAGCAGAGCATTAAAAAAAATTAAGTGTATGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATATTTCTAATTAGCAGAGCATTAAAAAAAATTAAGTGTATGTA  544

seq1  AGCAATTTTGAATATAGAGAAAAGTTGTAAAAACAGAACAAGGGTCTTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTTGAATATAGAGAAAAGTTGTAAAAACAGAACAAGGGTCTTTT  594

seq1  TCTCATGTATATGAGAATAAAAGGATCACTCCACGTACACAAATTAATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTATATGAGAATAAAAGGATCACTCCACGTACACAAATTAATGT  644

seq1  TTATTAAAAATGAAGACAGTACCTTATATTACCAAAATCCAAGAATATCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAATGAAGACAGTACCTTATATTACCAAAATCCAAGAATATCA  694

seq1  GAAAATGATCACAGATTTATTATTTTCATGTAATTGTACAGATCGTGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGATCACAGATTTATTATTTTCATGTAATTGTACAGATCGTGTGT  744

seq1  GTGAAGCAATTATTTAAATAATCTTTAGAACAAAAAGACCCAGTTCCAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCAATTATTTAAATAATCTTTAGAACAAAAAGACCCAGTTCCAAG  794

seq1  TCAAGTGTTGGAATAAGTTGCTCCATCTGTTTGTGCTTCTCTCATGTCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTTGGAATAAGTTGCTCCATCTGTTTGTGCTTCTCTCATGTCTC  844

seq1  TAAGTTCTCCTTGAAACCATTGTCCCAATCCTGTTGAAGATGCAGATCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTCCTTGAAACCATTGTCCCAATCCTGTTGAAGATGCAGATCCT  894

seq1  GTGTTTTTGAGAACGTCCTCTGTATGAGTACAGCTTGTCTTACTCATGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTGAGAACGTCCTCTGTATGAGTACAGCTTGTCTTACTCATGGT  944

seq1  GCATTTGCTTCTCTCTTGAAGAGCCAGAGAAGTGATAATGTGTTTATCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCTTCTCTCTTGAAGAGCCAGAGAAGTGATAATGTGTTTATCCT  994

seq1  CTTGAAGTCTAATAGGCCGACACACGATTCCATTTGTCTTATTATTACTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTCTAATAGGCCGACACACGATTCCATTTGTCTTATTATTACTG  1044

seq1  GGACCTCTTACCACTTGCTTACGACAGTGTCTGCCAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCTTACCACTTGCTTACGACAGTGTCTGCCAGAATTC  1086