BAC Information

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BAC

Clone NameB6Ng01-094C04
Chromosome1 (Build37)
Map Location 71,799,691 - 71,913,502
singlet/doubletdoublet
Overlap geneLOC675667
Upstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528
Downstream geneEG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094C04.bB6Ng01-094C04.g
ACCDH905435DH905436
length1,182697
definitionDH905435|Mus musculus domesticus DNA, BAC clone: B6Ng01-094C04, 5' end.DH905436|Mus musculus domesticus DNA, BAC clone: B6Ng01-094C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,799,691 - 71,800,676)(71,912,807 - 71,913,502)
sequence
gaattccttgctactgacatacatgtattggtctgccttacactgcatag
ttgagctgcatttgttgggactctatagagagaaacacatggaaaaactt
ctggtaatgtgcttgctgagtcctcacagtccttgggctgattgttgatt
ggcagaataatgtcagctgagacaaattcacgtgctgagacaagacacat
gctgaggtaagacctgtggaggacacatgatgttttggagcgagtttaga
aaggacttgacagacagtgacagaggctcagctaaccttgctgtgcaacg
gttgttggtctcatgtctttgctgatcttcatttctgagagaggcacagc
tgagaacttctggcgttccttctggtcccttctgctgactcctgctgagg
ctgaggcttggctgtctctgctaggcagtgtcactgctgctgatttgtgt
ttgttatcccgagtctacccaactggactgctgatatatccttgaaatgt
ttgtgagtggatcaagctgctgctgttgtcctgagatttgaactaccaat
ttccagacaacccagatgggagttgctccaaagaacctttctaaacaggt
tcacttccctcatatcctttcttttctactacctgtggtgagtagtgggc
taaaaggaaggttaaagcatttaagaactaccattaaaagtagactttga
aaaaattaaagttacacatgaccattatcttttgtgcccagtcacaccat
ctttgataccttcctgcctgtagtttcatccatttcaaattactctttct
acaatgagggaagcatgttggaattctactcacacatagattagaagctt
atagtccttgggacaggtagcagcctgaactaaaagataatctataagag
agctgcattatgactttcataggaggttattagacatgactttctcctat
caactttgtgtgttgaagtctcaatgcccagcacttaaaagtatgataaa
attgagatagatctttaagatataattatggttaaatagatttattgaca
aatgtgtgggcagagaggagaggccgtgtaaggtattgagggctctgttt
aacatgtgaggggctttcagtgaaactagctcccagtaactcagctaacg
tttcagcctcaaacagaagacaaaattgttgt
gaattcagcgtgcctctgacttgagtatctggggcattttgtcattggtt
ccatagaacactgatgtgtaggcttggggctgccgtagtcaacagttaca
cttcgagtttgattgatctcactttgtaataattctccctagagaagaaa
aatgggatgaacccctgaactacctccagctaggttcaaggaagtacaga
catttgatttttttttaacatttccatctgaattagagcccccatgggtg
atacaactgaaaaacagcatttcattccagggaaaataggcttggcagcc
cctccatatacaagttcaacttcaggccaaagaaaagaaacactcattat
gtaaccagatcaaattattagctatagaggagagttcctggtttggtcta
gtctgttataggaaataattaccagttgccaatgttatttggtcataaca
attttttattctagatattttcactttggagacctttaccatggtttctt
atttagttatatactattgcataagacacacagtcataaggcagggttga
ctcccttcttacttttcactagtattcacaaggaaaaggggaggtatttc
tctaagtaaataataataataacaataacaacaacaacaacaataatact
ccttttctaattcctggatgaagagggatggggtgggagggtgagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71799691_71800676
seq2: B6Ng01-094C04.b_264_1227

seq1  GAGGACACATGATGTTTTGGAGCGAGTTTAGAAAGGACTTGACAGACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACATGATGTTTTGGAGCGAGTTTAGAAAGGACTTGACAGACAGT  50

seq1  GACAGAGGCTCAGCTAACCTTGCTGTGCAACGGTTGTTGGTCTCATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGCTCAGCTAACCTTGCTGTGCAACGGTTGTTGGTCTCATGTCT  100

seq1  TTGCTGATCTTCATTTCTGAGAGAGGCACAGCTGAGAACTTCTGGCGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATCTTCATTTCTGAGAGAGGCACAGCTGAGAACTTCTGGCGTTC  150

seq1  CTTCTGGTCCCTTCTGCTGACTCCTGCTGAGGCTGAGGCTTGGCTGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTCCCTTCTGCTGACTCCTGCTGAGGCTGAGGCTTGGCTGTCTC  200

seq1  TGCTAGGCAGTGTCACTGCTGCTGATTTGTGTTTGTTATCCCGAGTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGCAGTGTCACTGCTGCTGATTTGTGTTTGTTATCCCGAGTCTAC  250

seq1  CCAACTGGACTGCTGATATATCCTTGAAATGTTTGTGAGTGGATCAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGGACTGCTGATATATCCTTGAAATGTTTGTGAGTGGATCAAGCT  300

seq1  GCTGCTGTTGTCCTGAGATTTGAACTACCAATTTCCAGACAACCCAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTTGTCCTGAGATTTGAACTACCAATTTCCAGACAACCCAGATG  350

seq1  GGAGTTGCTCCAAAGAACCTTTCTAAACAGGTTCACTTCCCTCATATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGCTCCAAAGAACCTTTCTAAACAGGTTCACTTCCCTCATATCCT  400

seq1  TTCTTTTCTACTACCTGTGGTGAGTAGTGGGCTAAAAGGAAGGTTAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTACTACCTGTGGTGAGTAGTGGGCTAAAAGGAAGGTTAAAGC  450

seq1  ATTTAAGAACTACCATTAAAAGTAGACTTTGAAAAAATTAAAGTTACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAACTACCATTAAAAGTAGACTTTGAAAAAATTAAAGTTACACA  500

seq1  TGACCATTATCTTTTGTGCCCAGTCACACCATCTTTGATACCTTCCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTATCTTTTGTGCCCAGTCACACCATCTTTGATACCTTCCTGCC  550

seq1  TGTAGTTTCATCCATTTCAAATTACTCTTTCTACAATGAGGGAAGCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTCATCCATTTCAAATTACTCTTTCTACAATGAGGGAAGCATGT  600

seq1  TGGAATTCTACTCACACATAGATTAGGAAGCTTATAGTCCTTGGGACAGG  650
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGAATTCTACTCACACATAGATTA-GAAGCTTATAGTCCTTGGGACAGG  649

seq1  TAGCAGCCTGAACTAAAAGATAATCTATAAGAGAGCTGCATTATGACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCTGAACTAAAAGATAATCTATAAGAGAGCTGCATTATGACTTT  699

seq1  CATAGGAGGTTATTAGGACATGACTTTCTCCTTATCAACTTTGTGTGTTG  750
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  CATAGGAGGTTATTA-GACATGACTTTCTCC-TATCAACTTTGTGTGTTG  747

seq1  AAGTCTCAATGCCCAGCACTTAAAAGTATGATAAAATTGAGATAGGATCT  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGTCTCAATGCCCAGCACTTAAAAGTATGATAAAATTGAGATA-GATCT  796

seq1  TTAAAGATATAATTATGGTTAAATTAAGATTTATTTGACAAATGTGTGGG  850
      || |||||||||||||||||||||  ||||||| ||||||||||||||||
seq2  TT-AAGATATAATTATGGTTAAAT--AGATTTA-TTGACAAATGTGTGGG  842

seq1  CAGAGAGGAGAGGCCGTGTAAGGGTATTGAGGGGCTTCCTGTTTAACAAT  900
      ||||||||||||||||||||| |||||||| |||||  ||||||||| ||
seq2  CAGAGAGGAGAGGCCGTGTAA-GGTATTGA-GGGCT--CTGTTTAAC-AT  887

seq1  GTGAGGGGCTTCAGGTGAAACTAAGCTCCCACGTTACACTCAACCTTAAC  950
      |||||||||||   |||||||| |||||||| ||   ||||| |  ||||
seq2  GTGAGGGGCTTTCAGTGAAACT-AGCTCCCA-GT--AACTCAGC--TAAC  931

seq1  GTTTCAGCCTTCAAAACAGAAGGACAATAATTTTGT  986
      ||||||||||   |||||||| ||||| | | ||||
seq2  GTTTCAGCCT--CAAACAGAA-GACAAAATTGTTGT  964

seq1: chr1_71912807_71913502
seq2: B6Ng01-094C04.g_68_764 (reverse)

seq1  TCCTCA-CCTCCCACCCCATCCCTCTTCATCCAGGAATTAGAAAAGGAGT  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCCTCCCACCCCATCCCTCTTCATCCAGGAATTAGAAAAGGAGT  50

seq1  ATTATTGTTGTTGTTGTTGTTATTGTTATTATTATTATTTACTTAGAGAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTTGTTGTTGTTGTTATTGTTATTATTATTATTTACTTAGAGAA  100

seq1  ATACCTCCCCTTTTCCTTGTGAATACTAGTGAAAAGTAAGAAGGGAGTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCCCCTTTTCCTTGTGAATACTAGTGAAAAGTAAGAAGGGAGTCA  150

seq1  ACCCTGCCTTATGACTGTGTGTCTTATGCAATAGTATATAACTAAATAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCCTTATGACTGTGTGTCTTATGCAATAGTATATAACTAAATAAG  200

seq1  AAACCATGGTAAAGGTCTCCAAAGTGAAAATATCTAGAATAAAAAATTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATGGTAAAGGTCTCCAAAGTGAAAATATCTAGAATAAAAAATTGT  250

seq1  TATGACCAAATAACATTGGCAACTGGTAATTATTTCCTATAACAGACTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCAAATAACATTGGCAACTGGTAATTATTTCCTATAACAGACTAG  300

seq1  ACCAAACCAGGAACTCTCCTCTATAGCTAATAATTTGATCTGGTTACATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCAGGAACTCTCCTCTATAGCTAATAATTTGATCTGGTTACATA  350

seq1  ATGAGTGTTTCTTTTCTTTGGCCTGAAGTTGAACTTGTATATGGAGGGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTTTCTTTTCTTTGGCCTGAAGTTGAACTTGTATATGGAGGGGC  400

seq1  TGCCAAGCCTATTTTCCCTGGAATGAAATGCTGTTTTTCAGTTGTATCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGCCTATTTTCCCTGGAATGAAATGCTGTTTTTCAGTTGTATCAC  450

seq1  CCATGGGGGCTCTAATTCAGATGGAAATGTTAAAAAAAAATCAAATGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGGGCTCTAATTCAGATGGAAATGTTAAAAAAAAATCAAATGTCT  500

seq1  GTACTTCCTTGAACCTAGCTGGAGGTAGTTCAGGGGTTCATCCCATTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCCTTGAACCTAGCTGGAGGTAGTTCAGGGGTTCATCCCATTTTT  550

seq1  CTTCTCTAGGGAGAATTATTACAAAGTGAGATCAATCAAACTCGAAGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTAGGGAGAATTATTACAAAGTGAGATCAATCAAACTCGAAGTGT  600

seq1  AACTGTTGACTACGGCAGCCCCAAGCCTACACATCAGTGTTCTATGGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGACTACGGCAGCCCCAAGCCTACACATCAGTGTTCTATGGAAC  650

seq1  CAATGACAAAATGCCCCAGATACTCAAGTCAGAGGCACGCTGAATTC  696
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACAAAATGCCCCAGATACTCAAGTCAGAGGCACGCTGAATTC  697