BAC Information

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BAC

Clone NameB6Ng01-094O10
Chromosome1 (Build37)
Map Location 6,229,620 - 6,230,769
singlet/doubletsinglet
Overlap geneRb1cc1
Upstream geneEG636659, Oprk1, Npbwr1, 4732440D04Rik
Downstream geneEG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094O10.bB6Ng01-094O10.g
ACCDH905991DH905992
length1,2291,130
definitionDH905991|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O10, 5' end.DH905992|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacttaaaaatgataaaagcaatctacagcaaacca
gtagccaacatcaaactaaatggtgagaagctggaagcaatcacactaaa
atcagggactccttacctattcaacattgtacttgaagtcctagccagat
caattcgacaacaaaaggagatcaaggggatacaaattggaaaggaagaa
gtcaaaatatcactttttgcaggtgatatgatagtatatataactgaccc
taaaaattccaccagagaactactaaacatgataaacaggttcaatgaag
tagctggatatgaaattaactcaagtcaatggcctttctctacataaagg
ataaacaggctgagaaagaaattagggaaacaacacccttcacaatagtc
acaaataatataaaataccttggcatgactctaactaaggaagtggaaga
tctgtacaataagaacttcaagtctctgaaaaagaaatctaacaagatct
cagaagatggaaagatctcccatgctcatggattggcaatatcaatatag
taaaaatggctattgccaaaaataatctatagattcaatgtaatccccat
caaaattccaactcaattcttcactgagttagctagggcaatttgcaaat
tcatcttgaataacaaaaaacctaggatagcaaaaacacttctcaaggat
aaaagaacctcttgtggaatcaccatgcctgacctaaagctttactacag
agcaattgtgataaaaactgcatggtactggtatagtgacagacaagtat
accaatggaatagaattgaagacccagaaatgaacccacacacctatggt
cacttgatctttgacaagggagctaaaactatccagtgaaaaaggacagc
attttcaacaaatggtgctggcacaactggctgttatcatgtagaagatt
gcgaattgatccattcctatctacttgtactaagtcaaatgtaagtggat
aagactccacataaaactagagaccctgaaacttattagagagaaaggtg
ggggaaagccttgaagatatgggcacaggaataattcctgaatagaaaca
gcatggctggtctgtagatcgagaatcgcacaatggacctcataattgca
agccttctgtaagccaagaaccgtcataagatcaaagccacttcacgaat
tggggagaagagaatctttacctatccta
gaattcttaaggagatgaatagtttaagattctcatgtagggaggtgctt
actgcaaaaagaccactttccaaataatggaaatgttcaaaaatattttt
taatttgtagtgatttattcttgaaccactcaaaatctattaatgcaaac
cctttgaactgcactaaaaatttacgctcaaataatcttcccaaatttat
aatcaactcaaaagcatggttacagataatttgatcaagtctccaaactc
caacgcaggttctgctgttaatcatcctcacgcatgcgcacgcacgcaca
cacaacttaccctgctcatagaatcaaagcacttcctgaccagagattcc
acatcattgggtctatcttgaacatttatccagtctaacaaagaaacatt
aaaaaaaggcaactcactgtctttagcatccactgaagcttcttcttgct
ggacagtactttgacaagattccctaagttctttgccacgttcagtaccg
gtgggatctggagctacatgctccattgacttgtgaaatgaggttaccaa
ggatgtgttcgttgttctaggcatatcaggagagagcaccagttcagtag
atcttttcatctcagctttctctgagccttcatgttcattcaaagaatcc
ggtcttcccaaacattccctgtaactatgtctggttaggcactccaatag
tggaatcttggccattactgaaacagcagttcctaaacttaagatacaaa
acatgagtcagtaaaacgagtgtgttctactatcatccaacgaaatcaca
ctgtacttcaaaataccagccttaccactgcttcatgtctttattcacat
ataagctcctttattagccagtaaaagtacagcttagtagagaggcgatc
actaacgttaaaatacaaatttaaagcaaagctagctagatatactaaga
gtagacactgactttcaaatttgtttcaatacactattattaaaaacatt
aaaatttatgaagactgacatagcaggcactcaactgtatttgctttatc
acattcaaatatatttaatataaaaatttaggattattagaattttagcc
ttaagatactcttatcttaccatatcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6229620_6230769
seq2: B6Ng01-094O10.g_71_1200 (reverse)

seq1  TTTTGATATAGTTAGTATAAGAGTTATCCTAAGGCTAAAATTCTTAATTT  50
      ||||||||| || || ||||||| |||| ||||||||||||||| |   |
seq2  TTTTGATATGGTAAG-ATAAGAG-TATCTTAAGGCTAAAATTCTAA---T  45

seq1  AATCCTATATTTTTAATATATTAAATATATTTGATTGTGATAAAGCCAAT  100
      ||||||| |||||   |||||||||||||||||| |||||||||| ||| 
seq2  AATCCTAAATTTT---TATATTAAATATATTTGAATGTGATAAAG-CAAA  91

seq1  TACAGTGTGAGTGACTGCTATGGTCAGTCTTCATAAATTTTAATGTTTTT  150
      |||||| |||||| ||||||| ||||||||||||||||||||||||||||
seq2  TACAGT-TGAGTGCCTGCTAT-GTCAGTCTTCATAAATTTTAATGTTTTT  139

seq1  TAATTAATAGGTTGTATTTGAAACAAATTTGAAAGTCAGTGTCTACTTCT  200
        | ||||||  |||| ||||||||||||||||||||||||||||||   
seq2  --AATAATAG--TGTA-TTGAAACAAATTTGAAAGTCAGTGTCTACT--C  182

seq1  TTAGTATAATCTAGCTAGCTTTGCTTTAAATTTGTATTTTAACGTTAGTG  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAT-ATCTAGCTAGCTTTGCTTTAAATTTGTATTTTAACGTTAGTG  231

seq1  ATCGCCTCTCTACTAAGCTGTACTTTTAACTGGCTAATAAAGGAGCTTAT  300
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCGCCTCTCTACTAAGCTGTACTTTT-ACTGGCTAATAAAGGAGCTTAT  280

seq1  ATGTGAATAAAGACATGGAGCAGTGGTAAGGCTGGTATTTTGAAGTACAG  350
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGTGAATAAAGACATGAAGCAGTGGTAAGGCTGGTATTTTGAAGTACAG  330

seq1  TGTGATTTCGTTGGATGATAGTAGAACACACTCGTTTTACTGACTCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTCGTTGGATGATAGTAGAACACACTCGTTTTACTGACTCATGT  380

seq1  TTTGTATCTTAAGTTTAGGAACTGCTGTTTCAGTAATGGCCAAGATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCTTAAGTTTAGGAACTGCTGTTTCAGTAATGGCCAAGATTCCA  430

seq1  CTATTGGAGTGCCTAACCAGACATAGTTACAGGGAATGTTTGGGAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGAGTGCCTAACCAGACATAGTTACAGGGAATGTTTGGGAAGACC  480

seq1  GGATTCTTTGAATGAACATGAAGGCTCAGAGAAAGCTGAGATGAAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTTGAATGAACATGAAGGCTCAGAGAAAGCTGAGATGAAAAGAT  530

seq1  CTACTGAACTGGTGCTCTCTCCTGATATGCCTAGAACAACGAACACATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAACTGGTGCTCTCTCCTGATATGCCTAGAACAACGAACACATCC  580

seq1  TTGGTAACCTCATTTCACAAGTCAATGGAGCATGTAGCTCCAGATCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAACCTCATTTCACAAGTCAATGGAGCATGTAGCTCCAGATCCCAC  630

seq1  CGGTACTGAACGTGGCAAAGAACTTAGGGAATCTTGTCAAAGTACTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACTGAACGTGGCAAAGAACTTAGGGAATCTTGTCAAAGTACTGTCC  680

seq1  AGCAAGAAGAAGCTTCAGTGGATGCTAAAGACAGTGATCTGCCTTTTTTT  750
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  AGCAAGAAGAAGCTTCAGTGGATGCTAAAGACAGTGAGTTGCCTTTTTTT  730

seq1  AATGTTTCTTTGTTAGACTGGATAAATGTTCAAGATAGACCCAATGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCTTTGTTAGACTGGATAAATGTTCAAGATAGACCCAATGATGT  780

seq1  GGAATCTCTGGTCAGGAAGTGCTTTGATTCTATGAGCAGGGTAAGTTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTCTGGTCAGGAAGTGCTTTGATTCTATGAGCAGGGTAAGTTGTG  830

seq1  TGTGCGTGCGTGCGCATGCGTGAGGATGATTAACAGCAGAACCTGCGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGCGTGCGCATGCGTGAGGATGATTAACAGCAGAACCTGCGTTG  880

seq1  GAGTTTGGAGACTTGATCAAATTATCTGTAACCATGCTTTTGAGTTGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGAGACTTGATCAAATTATCTGTAACCATGCTTTTGAGTTGATT  930

seq1  ATAAATTTGGGAAGATTATTTGAGCGTAAATTTTTAGTGCAGTTCAAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTGGGAAGATTATTTGAGCGTAAATTTTTAGTGCAGTTCAAAGG  980

seq1  GTTTGCATTAATAGATTTTGAGTGGTTCAAGAATAAATCACTACAAATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATTAATAGATTTTGAGTGGTTCAAGAATAAATCACTACAAATTA  1030

seq1  AAAAATATTTTTGAACATTTCCATTATTTGGAAAGTGGTCTTTTTGCAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTTTGAACATTTCCATTATTTGGAAAGTGGTCTTTTTGCAGT  1080

seq1  AAGCACCTCCCTACATGAGAATCTTAAACTATTCATCTCCTTAAGAATTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTCCCTACATGAGAATCTTAAACTATTCATCTCCTTAAGAATTC  1130