BAC Information

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BAC

Clone NameB6Ng01-095A03
Chromosome11 (Build37)1 (Build37)
Map Location 41,729,229 - 41,729,325192,827,421 - 192,828,073
singlet/doubletsingletsinglet
Overlap geneGabrg2
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
Downstream geneGabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095A03.bB6Ng01-095A03.g
ACCDH906063DH906064
length252972
definitionDH906063|Mus musculus domesticus DNA, BAC clone: B6Ng01-095A03, 5' end.DH906064|Mus musculus domesticus DNA, BAC clone: B6Ng01-095A03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,729,229 - 41,729,325)(192,827,421 - 192,828,073)
sequence
accaccagttccaggccagcctaagctacaccacaccctgtctaaaaatc
aagggaagggctagcgggatgactcaatgtgttatctttagcttgctgtc
aaacttgacgacctgagttgtccctggggcccacaggaggagccagttgc
cctctgatctgcatatttatatcatggcacacaagtgtaccatgtgtgtg
tatctgtgtgtgtttgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtg
tg
gaattccaggaaaacctgggctgttacatagaaaaaccctatcttggaag
aaacaaaaaaccaaaaaaaccaaaaacaagccttaaaaactttttaagct
ataaaaggtgtggtttcttataaatttgcagcagtggaaatcttgaaaga
ataaaaattaagttgggtgtgatagttcatgcctgtctcccagcatttga
gaggcagaaaggtcaaggttcagggtcatcttcagctttgcagtgagtct
gaggccagcctgggctacatgagaccctgactcagaaatttaatgattat
ttaaaataaaaattaaaagcaaattaaggaaacacaacggcacaaacgaa
aacagtagtaatccagtaacaaactccaaaacaagctgaggtctgtgcat
ttcctgagcggggttttataatacctgtttgttttgcagtgctggtatca
aatccagagaaaacccttgtcttaagtaaacacagtgttgtggttggatg
agaaatgactgccataggctcatgagttggagcacttggtcccagttgct
ggtgctgtttgggaagtgtgtcactgggttaagggtcgatagtcttgatc
tacttgtgtgtttttctgtgtgtagatgagactgaacagctagcttcctg
tcgctgctgccatcctctccgtgactgttgcctttcccctatgcctctgg
aaccataagtctttgaatgccatcagcagagcttatcgggctgtgccaag
agaagcttggaaggcagtaatgctgagcagtgcgaacagtggaggctccg
ctcctgagatttcagaggggaacaaggacattttttagacttgggctaga
ggccaatcatggaatatttaacgaagactctggctacgttctgcctgtaa
cctaagatgtataaggctagcatagactaaacagaggatgtgacgccgtt
aggtcagagctgagagatggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41729229_41729325
seq2: B6Ng01-095A03.b_226_301 (reverse)

seq1  CACACATGCATTCACACACACACACATGTGCACATACATGCACACATGCA  50
      ||||||  ||  ||||||||||||||    |||| |||  ||||||    
seq2  CACACA--CA--CACACACACACACA----CACACACAGACACACA----  38

seq1  TTCACACACACACAAACACACACATACACCCCTACACATGTGTGTGC  97
         ||||||||| | ||||||||||       |||||   |||||||
seq2  --AACACACACAGATACACACACAT-----GGTACAC--TTGTGTGC  76

seq1: chr1_192827421_192828073
seq2: B6Ng01-095A03.g_67_719 (reverse)

seq1  CGACAGGAAGCTAGCTGTTCAGTCTCATCTACACACAGAAAAACACACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGGAAGCTAGCTGTTCAGTCTCATCTACACACAGAAAAACACACAA  50

seq1  GTAGATCAAGACTATCGACCCTTAACCCAGTGACACACTTCCCAAACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCAAGACTATCGACCCTTAACCCAGTGACACACTTCCCAAACAGC  100

seq1  ACCAGCAACTGGGACCAAGTGCTCCAACTCATGAGCCTATGGCAGTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAACTGGGACCAAGTGCTCCAACTCATGAGCCTATGGCAGTCATT  150

seq1  TCTCATCCAACCACAACACTGTGTTTACTTAAGACAAGGGTTTTCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCAACCACAACACTGTGTTTACTTAAGACAAGGGTTTTCTCTGG  200

seq1  ATTTGATACCAGCACTGCAAAACAAACAGGTATTATAAAACCCCGCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATACCAGCACTGCAAAACAAACAGGTATTATAAAACCCCGCTCAG  250

seq1  GAAATGCACAGACCTCAGCTTGTTTTGGAGTTTGTTACTGGATTACTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCACAGACCTCAGCTTGTTTTGGAGTTTGTTACTGGATTACTACT  300

seq1  GTTTTCGTTTGTGCCGTTGTGTTTCCTTAATTTGCTTTTAATTTTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCGTTTGTGCCGTTGTGTTTCCTTAATTTGCTTTTAATTTTTATTT  350

seq1  TAAATAATCATTAAATTTCTGAGTCAGGGTCTCATGTAGCCCAGGCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCATTAAATTTCTGAGTCAGGGTCTCATGTAGCCCAGGCTGGC  400

seq1  CTCAGACTCACTGCAAAGCTGAAGATGACCCTGAACCTTGACCTTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTCACTGCAAAGCTGAAGATGACCCTGAACCTTGACCTTTCTGC  450

seq1  CTCTCAAATGCTGGGAGACAGGCATGAACTATCACACCCAACTTAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAATGCTGGGAGACAGGCATGAACTATCACACCCAACTTAATTTT  500

seq1  TATTCTTTCAAGATTTCCACTGCTGCAAATTTATAAGAAACCACACCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTCAAGATTTCCACTGCTGCAAATTTATAAGAAACCACACCTTT  550

seq1  TATAGCTTAAAAAGTTTTTAAGGCTTGTTTTTGGTTTTTTTGGTTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTTAAAAAGTTTTTAAGGCTTGTTTTTGGTTTTTTTGGTTTTTTG  600

seq1  TTTCTTCCAAGATAGGGTTTTTCTATGTAACAGCCCAGGTTTTCCTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCAAGATAGGGTTTTTCTATGTAACAGCCCAGGTTTTCCTGGAA  650

seq1  TTC  653
      |||
seq2  TTC  653