BAC Information

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BAC

Clone NameB6Ng01-095B19
Chromosome1 (Build37)
Map Location 133,993,984 - 134,129,357
singlet/doubletdoublet
Overlap genePctk3, LOC100042221, Lemd1
Upstream geneMapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4
Downstream geneEG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095B19.bB6Ng01-095B19.g
ACCDH906139DH906140
length928972
definitionDH906139|Mus musculus domesticus DNA, BAC clone: B6Ng01-095B19, 5' end.DH906140|Mus musculus domesticus DNA, BAC clone: B6Ng01-095B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,993,984 - 133,994,911)(134,128,385 - 134,129,357)
sequence
gaattccacaatgatgcatatgggtggcaaacttatcccattaaaggtgg
gaaggattggggcccagtaaggctcagtcatccagaattgccgagtgtcc
aagcagaactcggatacagaattctcacgttggctttcgataactctgtg
gttacagagttccctgggactgtgaacgtctggggtctatggagatgctt
aatcctcaacaacatcccaaagctattccatccctgcttcttcttcttct
caagcttccatttattttgtaattaccaggagagaaatctttttttaaaa
aaagcattacagacccccctccctgtggttctgtcactgggagcccaagg
tgagacccagggctgtaaatttgtagcataccctcagacactgtgaggta
ggaatgtcttgcacacttggttctgaagaatctgttcctgggctttgcag
aggctctgtcccaagttctccctcacggcggagagccagtcagcacaaca
gaagtctcctcatgagtgaacacccctttagtcttgattttgttgtgcag
gcatctctcttgggggtgggggctgaaatgatcagtcttatgtgtgtcct
gagaatgtcttaaggttttgtactgctgtgatgaaacactgtgaccaaaa
gcaactcgggaaggaaagggtttatttcagcttacaacttaagtcacacc
ccagcactgagggaagtcagggcaggaaccaaagcagaaaccacaagaaa
atgtattgattggtttactcagtttgctttcttatacatcctaggaaaac
ttgcccagattatggcaccacctcagtgggctgggcccttccacgtcatt
catcaaccaaaaaaaaaagaaaaaaagcctcatgggctttctgcagtgca
atctgtcatgggggagagaggggaagtc
gaattcctcagttaccaatgcctcgcagtgctcagtgcctagtgtctttg
cttgacaacaggcagagcctgttggatgctgctgcacacactaactgaca
aagggacacgcttagagacacacacatttctcctatgttcctaagtgggc
ctagaaccgagttcgatatgtgaaggctgaggaggtggcacagggtcagg
tgaagctggtgggcccgtggtaacgctttcattgtggggcaaaagggaca
gtgatactctgggtcctagctagaacacaaaagccatttcaaaaggtgga
tttttttttttcattaaaagatcaagtctagactaggatagtttaggtat
agcagaatgtagtatttctttatatgtctgagagtgctcatttttatttt
taacatacatgtagaagtattcatgcattagaattattcataccttcttg
ccttccttgcctttgttttttgagaatttgatatttcctttcaaaatgat
ttttatggctggatctggggaaacaaaaggagaacaggccaggagagcag
atgaggcagcaggagaaaaaaaacaccaagtgctttctctcagccacagg
cgcttccactagggtaagaaaattcacagtgccctttacagagaaaagcg
ccttcctcaggagctgcgggagcctcggagagacatgcttaggccccctg
tggggacgtggctggctgtcctgtttgcacgcctcagagagacataaact
agcaggctctctgagagctgctgttctcagtttagcattgtccctgaaaa
gccagctgtgagctctgtgtgtccccaaatgccagatagggaggactcct
atctagaacagcaccctgaagagggggagccagtagctttctgagtggca
gacagccatcagtagaaagcagcccatagtggggggaggattcagtgcct
gggatgtgttgtgttggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133993984_133994911
seq2: B6Ng01-095B19.b_47_973

seq1  GAATTCCACAATGATGCATATGGGTGGCAAACTTATCCCATTAAAGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAATGATGCATATGGGTGGCAAACTTATCCCATTAAAGGTGG  50

seq1  GAAGGATTGGGGCCCAGTAAGGCTCAGTCATCCAGAATTGCCGAGTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATTGGGGCCCAGTAAGGCTCAGTCATCCAGAATTGCCGAGTGTCC  100

seq1  AAGCAGAACTCGGATACAGAATTCTCACGTTGGCTTTCGATAACTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAACTCGGATACAGAATTCTCACGTTGGCTTTCGATAACTCTGTG  150

seq1  GTTACAGAGTTCCCTGGGACTGTGAACGTCTGGGGTCTATGGAGATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGAGTTCCCTGGGACTGTGAACGTCTGGGGTCTATGGAGATGCTT  200

seq1  AATCCTCAACAACATCCCAAAGCTATTCCATCCCTGCTTCTTCTTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCAACAACATCCCAAAGCTATTCCATCCCTGCTTCTTCTTCTTCT  250

seq1  CAAGCTTCCATTTATTTTGTAATTACCAGGAGAGAAATCTTTTTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTCCATTTATTTTGTAATTACCAGGAGAGAAATCTTTTTTTAAAA  300

seq1  AAAGCATTACAGACCCCCCTCCCTGTGGTTCTGTCACTGGGAGCCCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTACAGACCCCCCTCCCTGTGGTTCTGTCACTGGGAGCCCAAGG  350

seq1  TGAGACCCAGGGCTGTAAATTTGTAGCATACCCTCAGACACTGTGAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCCAGGGCTGTAAATTTGTAGCATACCCTCAGACACTGTGAGGTA  400

seq1  GGAATGTCTTGCACACTTGGTTCTGAAGAATCTGTTCCTGGGCTTTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTCTTGCACACTTGGTTCTGAAGAATCTGTTCCTGGGCTTTGCAG  450

seq1  AGGCTCTGTCCCAAGTTCTCCCTCACGGCGGAGAGCCAGTCAGCACAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTCCCAAGTTCTCCCTCACGGCGGAGAGCCAGTCAGCACAACA  500

seq1  GAAGTCTCCTCATGAGTGAACACCCCTTTAGTCTTGATTTTGTTGTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCCTCATGAGTGAACACCCCTTTAGTCTTGATTTTGTTGTGCAG  550

seq1  GCATCTCTCTTGGGGGTGGGGGCTGAAATGATCAGTCTTATGTGTGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCTCTTGGGGGTGGGGGCTGAAATGATCAGTCTTATGTGTGTCCT  600

seq1  GAGAATGTCTTAAGG-TTTGTACTGCTGTGATGAAACACTGTGACCAAAA  649
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGAATGTCTTAAGGTTTTGTACTGCTGTGATGAAACACTGTGACCAAAA  650

seq1  GCAACTCGGGAAGGAAAGGGTTTATTTCAGCTTACAACTTAAGTCACACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCGGGAAGGAAAGGGTTTATTTCAGCTTACAACTTAAGTCACACC  700

seq1  CCAGCACTGAGGGAAGTCAGGGCAGGAACCAAAGCAGAAACCACAAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGAGGGAAGTCAGGGCAGGAACCAAAGCAGAAACCACAAGAAA  750

seq1  ATGTATTGATTGGTTTACTCAGTTTGCTTTCTTATACATCCTAGGACAAC  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGTATTGATTGGTTTACTCAGTTTGCTTTCTTATACATCCTAGGAAAAC  800

seq1  TTGCCCAGA-TATGGCACCACCTCAGTGGGCTGGGCCCTTCCACGTCAAT  848
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  TTGCCCAGATTATGGCACCACCTCAGTGGGCTGGGCCCTTCCACGTCATT  850

seq1  CATCAACCAAAAAAAAAAAAAAAAAAAAAAAAAGCCTCAT-GGCTTTCTG  897
      ||||||||       |||||||||| |||||||||||||| |||||||||
seq2  CATCAACC-------AAAAAAAAAAGAAAAAAAGCCTCATGGGCTTTCTG  893

seq1  CAGGTCAATCTGTCATGGGGGAG---GGGGAAGT  928
      |||  ||||||||||||||||||   ||||||||
seq2  CAGTGCAATCTGTCATGGGGGAGAGAGGGGAAGT  927

seq1: chr1_134128385_134129357
seq2: B6Ng01-095B19.g_68_1039 (reverse)

seq1  CCCCCCCAACAC-ACACATCCCA-GCACTGAATCCTCCCCCCACTATGGG  48
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  CCCCCCCAACACAACACATCCCAGGCACTGAATCCTCCCCCCACTATGGG  50

seq1  CTGCTTTCTACTGATGGCTGTCCTGCCACTCAGAAAGCTACTGGCTTCCC  98
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  CTGCTTTCTACTGATGGCTGT-CTGCCACTCAGAAAGCTACTGGC-TCCC  98

seq1  CTTCTTCAGGGTGCTGTTCTAGATAGGAGTCCTTCCTATTCTGGCATTTG  148
      | ||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  CCTCTTCAGGGTGCTGTTCTAGATAGGAGTCCTCCCTA-TCTGGCATTTG  147

seq1  GGGACACACAGAGCTCACAGCTGGCTTTTCAGGGACAATGCTAAACTGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACACAGAGCTCACAGCTGGCTTTTCAGGGACAATGCTAAACTGAG  197

seq1  AACAGCAGCTCTCAGAGAGCCTGCTAGTTTATGTCTCTCTGAGGCGTGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGCTCTCAGAGAGCCTGCTAGTTTATGTCTCTCTGAGGCGTGCA  247

seq1  AACAGGACAGCCAGCCACGTCCCCACAGGGGGCCTAAGCATGTCTCTCCG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGACAGCCAGCCACGTCCCCACAGGGGGCCTAAGCATGTCTCTCCG  297

seq1  AGGCTCCCGCAGCTCCTGAGGAAGGCGCTTTTCTCTGTAAAGGGCACTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCCGCAGCTCCTGAGGAAGGCGCTTTTCTCTGTAAAGGGCACTGT  347

seq1  GAATTTTCTTACCCTAGTGGAAGCGCCTGTGGCTGAGAGAAAGCACTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCTTACCCTAGTGGAAGCGCCTGTGGCTGAGAGAAAGCACTTGG  397

seq1  TGTTTTTTTTCTCCTGCTGCCTCATCTGCTCTCCTGGCCTGTTCTCCTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTCTCCTGCTGCCTCATCTGCTCTCCTGGCCTGTTCTCCTTT  447

seq1  TGTTTCCCCAGATCCAGCCATAAAAATCATTTTGAAAGGAAATATCAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCCAGATCCAGCCATAAAAATCATTTTGAAAGGAAATATCAAAT  497

seq1  TCTCAAAAAACAAAGGCAAGGAAGGCAAGAAGGTATGAATAATTCTAATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAACAAAGGCAAGGAAGGCAAGAAGGTATGAATAATTCTAATG  547

seq1  CATGAATACTTCTACATGTATGTTAAAAATAAAAATGAGCACTCTCAGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATACTTCTACATGTATGTTAAAAATAAAAATGAGCACTCTCAGAC  597

seq1  ATATAAAGAAATACTACATTCTGCTATACCTAAACTATCCTAGTCTAGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGAAATACTACATTCTGCTATACCTAAACTATCCTAGTCTAGAC  647

seq1  TTGATCTTTTAATGAAAAAAAAAAATCCACCTTTTGAAATGGCTTTTGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTTTAATGAAAAAAAAAAATCCACCTTTTGAAATGGCTTTTGTG  697

seq1  TTCTAGCTAGGACCCAGAGTATCACTGTCCCTTTTGCCCCACAATGAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTAGGACCCAGAGTATCACTGTCCCTTTTGCCCCACAATGAAAG  747

seq1  CGTTACCACGGGCCCACCAGCTTCACCTGACCCTGTGCCACCTCCTCAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACCACGGGCCCACCAGCTTCACCTGACCCTGTGCCACCTCCTCAGC  797

seq1  CTTCACATATCGAACTCGGTTCTAGGCCCACTTAGGAACATAGGAGAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATATCGAACTCGGTTCTAGGCCCACTTAGGAACATAGGAGAAAT  847

seq1  GTGTGTGTCTCTAAGCGTGTCCCTTTGTCAGTTAGTGTGTGCAGCAGCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCTCTAAGCGTGTCCCTTTGTCAGTTAGTGTGTGCAGCAGCAT  897

seq1  CCAACAGGCTCTGCCTGTTGTCAAGCAAAGACACTAGGCACTGAGCACTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGGCTCTGCCTGTTGTCAAGCAAAGACACTAGGCACTGAGCACTG  947

seq1  CGAGGCATTGGTAACTGAGGAATTC  973
      |||||||||||||||||||||||||
seq2  CGAGGCATTGGTAACTGAGGAATTC  972