BAC Information

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BAC

Clone NameB6Ng01-095D23
Chromosome1 (Build37)
Map Location 138,882,567 - 139,040,663
singlet/doubletdoublet
Overlap geneRnu7-ps3, LOC100042567
Upstream geneTmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2
Downstream geneLOC100043143, Ptprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095D23.bB6Ng01-095D23.g
ACCDH906240DH906241
length1,0701,064
definitionDH906240|Mus musculus domesticus DNA, BAC clone: B6Ng01-095D23, 5' end.DH906241|Mus musculus domesticus DNA, BAC clone: B6Ng01-095D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,882,567 - 138,883,646)(139,039,592 - 139,040,663)
sequence
gaattcactgtgtagccttattgtggaatcaaattcatagtgatgctctg
gcctctacctctacgtgctgggatcatagacacaagcaattaagcctggt
gtcacctctttttcttgcttaagtcttagttcatcagacggttctgtatc
agtgacatcaagtggtgcctttaccctcacccattcagatagccatattt
gtgcctggggttgggggttaaggaggaaccttggaggagcctgttatttg
gaggtttttgcacttgggttgtaaagtttgggacattggtacctgcagat
tagagtgagccagctctcactggacttctgttatttacagccacagaaca
gcattcagcagctttgctcttttttgtttgtttgtttgtttgtttgtttg
tttttttgagacagggtttctctgtgtagccctggctgtcctagaactca
ctttgtaggccaggctagcctcgaactcagaaatccacctgcctctgcct
cccaagtgctgggattaaaggcgtgccactgcctggctaactttgccttt
tgcatcatagtttcaaccaacctctgactcaaaatattttaaacattgat
tctgtattaaacatatcaaattttcttctcggcacttggtttatacaaca
tttacagcattaggtattaaagtatctagtgataatctaaagcacatggg
agaatgtacaatagatcacacataaacactgtcgtgttttatataagact
tgatggttttgatgctcatagggggttcgggaatccaccctttgcagaaa
ctggggagcagccacattgcgctagtgcacctcagtttctaatgataaca
tcacaagagaataaagttgcatcgcatagacctgcctgccactagagcca
cacattaatgagttgatagtcatgagtaaatgtatacaatttcaaaaaaa
aaatatgttgtctgtagattgcacacacggttacctcgtagtgacttaga
gcccaggataaccaccaaatggttatatatgcttaaaatacatttgttgg
gtagggaaatgggggtgggg
gaattccagacatcacacagaaaacaaaacaccactccatacaattaacc
agttagtctcaatgcttcccatagctttgtgaaagaagtcttaagatgca
atccattctctattctgatttaccctctctaaatcaagagtaagagtgaa
agaatctcacaaacaaacaaaaccttaaaggtcaagacctgggctatctc
tgaaataaatgtttgctggaacacatacacacaaaatgtggtgtgagaga
agaaagtgactaaggcagaaaaatggcagaaagggggactgaggggtgcc
cgtgagagcgtgagggtggtgcctctcagtaggcagtcatgggcctcact
agaaccttaacattttagaggaaagcttaagtaggtaggcacagggccgg
ttatgcatgtcttgtaggtagagcacacaacagcaggtacactgctcact
gcagcaaatggccataccattctgctactgtctgggtctttatgtcccca
gaggtaaggcccctggccctactggaatgtgcaaggataagaggaggcag
ggtttactgaaaggaagttaagtcagtgggagggacaggccctcagagga
gatagtaggactggctctagcttcatcatctctctgccacctgttcccac
tgtgatcttcttcctcatcacagtcctgtaagcagcagagcccagtggcc
atggactgaaacttctgacattacaagccaaaagaaacctttcctctttt
atagtgacaagttcagatgtcttgtcatggtggggggacaaatgacttaa
cacattttgtcatggattcagagacagagacttctgacattacaagccaa
aagaaacctttcctctttttatagtgacaagttcagacgtcttgtcatgg
tggggggacaaatgactttaacacatttttgtcaatggattcagagacaa
ggagttttttaagaaaggagttttaaacttgcttattttacaagactgct
aggtgatcacacacaccacacctaacacacaccactcaacgcatgcagca
tgctgtgtttcgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138882567_138883646
seq2: B6Ng01-095D23.b_46_1115

seq1  GAATTCACTGTGTAGCCTTATTGTGGAATCAAATTCATAGTGATGCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAGCCTTATTGTGGAATCAAATTCATAGTGATGCTCTG  50

seq1  GCCTCTACCTCTACGTGCTGGGATCATAGACACAAGCAATTAAGCCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTACCTCTACGTGCTGGGATCATAGACACAAGCAATTAAGCCTGGT  100

seq1  GTCACCTCTTTTTCTTGCTTAAGTCTTAGTTCATCAGACGGTTCTGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCTTTTTCTTGCTTAAGTCTTAGTTCATCAGACGGTTCTGTATC  150

seq1  AGTGACATCAAGTGGTGCCTTTACCCTCACCCATTCAGATAGCCATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATCAAGTGGTGCCTTTACCCTCACCCATTCAGATAGCCATATTT  200

seq1  GTGCCTGGGGTTGGGGGTTAAGGAGGAACCTTGGAGGAGCCTGTTATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGGGTTGGGGGTTAAGGAGGAACCTTGGAGGAGCCTGTTATTTG  250

seq1  GAGGTTTTTGCACTTGGGTTGTAAAGTTTGGGACATTGGTACCTGCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTTGCACTTGGGTTGTAAAGTTTGGGACATTGGTACCTGCAGAT  300

seq1  TAGAGTGAGCCAGCTCTCACTGGACTTCTGTTATTTACAGCCACAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGAGCCAGCTCTCACTGGACTTCTGTTATTTACAGCCACAGAACA  350

seq1  GCATTCAGCAGCTTTGCTCTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGCAGCTTTGCTCTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTG  400

seq1  TTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCA  450

seq1  CTTTGTAGGCCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGGCCAGGCTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCCT  500

seq1  CCCAAGTGCTGGGATTAAAGGCGTGCCACTGCCTGGCTAACTTTGCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGGGATTAAAGGCGTGCCACTGCCTGGCTAACTTTGCCTTT  550

seq1  TGCATCATAGTTTCAACCAACCTCTGACTCAAAATATTTTAAACATTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATAGTTTCAACCAACCTCTGACTCAAAATATTTTAAACATTGAT  600

seq1  TCTGTATTAAACATATCAAATTTTCTTCTCGGCACTTGGTTTATACAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTAAACATATCAAATTTTCTTCTCGGCACTTGGTTTATACAACA  650

seq1  TTTACAGCATTAGGTATTAAAGTATCTAGTGATAATCTAAAGCACATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCATTAGGTATTAAAGTATCTAGTGATAATCTAAAGCACATGGG  700

seq1  AGAATGTACAATAGATCACACATAAACACTGTCGTGTTTTATATAAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTACAATAGATCACACATAAACACTGTCGTGTTTTATATAAGACT  750

seq1  TGATGGTTTTGATGCTCATAGGGGGTTCGGGAATCCACCCTTTGCAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTTTGATGCTCATAGGGGGTTCGGGAATCCACCCTTTGCAGAAA  800

seq1  CTGGGGAGCAGCCACATTGCGCTAGTGCACCTCAGTTTCTAATGATAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAGCAGCCACATTGCGCTAGTGCACCTCAGTTTCTAATGATAACA  850

seq1  TCACAAGAGAATAAAGTTGCATCGCATAGACCTGCCTGCCACTAGAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCACAAGAGAATAAAGTTGCATCGCATAGACCTGCCTGCCACTAG-AGCC  899

seq1  ACACATTAATGAGTTGATAGTCATGAGTAAATGTATACAATTTCAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTAATGAGTTGATAGTCATGAGTAAATGTATACAATTTCAAAAAA  949

seq1  AAAATATG-TGTCTGTAGATTGCACACACAGTTACCTCCATAGTGAAACT  999
      |||||||| |||||||||||||||||||| ||||||| | |||||  |||
seq2  AAAATATGTTGTCTGTAGATTGCACACACGGTTACCT-CGTAGTG--ACT  996

seq1  TAGAGCCCAGGGATAACAACCAAATATGTTTTTAATATATGTTTTAAAAA  1049
      ||||||||| ||||||| |||||  ||| ||   ||||||| ||  ||||
seq2  TAGAGCCCA-GGATAACCACCAA--ATGGTT---ATATATGCTT--AAAA  1038

seq1  TACATTTGTTGGGTAGGGAAGT-GGGGTGGGG  1080
      |||||||||||||||||||| | |||||||||
seq2  TACATTTGTTGGGTAGGGAAATGGGGGTGGGG  1070

seq1: chr1_139039592_139040663
seq2: B6Ng01-095D23.g_67_1130 (reverse)

seq1  ATCGAACACAC-GCATGCGTGCATGCGTGTGTGTGTGTGTGTGTGTGTGT  49
      |||||| |||| |||||| |||||||||       || ||| ||||||||
seq2  ATCGAA-ACACAGCATGC-TGCATGCGT-------TGAGTG-GTGTGTGT  40

seq1  GTGTGTGTGTGTGTGTGTGATCACCTAGCAGGTCTTGTAAAATTAGGCAA  99
       |  ||||| |||||||||||||||||||| ||||||||||| || ||||
seq2  -TAGGTGTG-GTGTGTGTGATCACCTAGCA-GTCTTGTAAAA-TAAGCAA  86

seq1  GTAT-ATACTCTTTCTTTAAAAAACT-CTTGTCTCTGAATCCA-TGAC-A  145
      || | | |||| ||  |||||||||| |||||||||||||||| |||| |
seq2  GTTTAAAACTCCTTTCTTAAAAAACTCCTTGTCTCTGAATCCATTGACAA  136

seq1  AAATGTGTT-AAGTCATTTGTCCCCCCACCATGACAAGACGTCTGAACTT  194
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTTAAAGTCATTTGTCCCCCCACCATGACAAGACGTCTGAACTT  186

seq1  GTCACTAT-AAAAGAGGAAAGGTTTCTTTTGGCTTGTAATGTCAGAAGTC  243
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTATAAAAAGAGGAAAGGTTTCTTTTGGCTTGTAATGTCAGAAGTC  236

seq1  TCTTGTCTCTGAATCCATGACAAAATGTGTTAAGTCATTTGTCCCCCCAC  293
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TGTCTCTGAATCCATGACAAAATGTGTTAAGTCATTTGTCCCCCCAC  285

seq1  CATGACAAGACATCTGAACTTGTCACTATAAAAGAGGAAAGGTTTCTTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAAGACATCTGAACTTGTCACTATAAAAGAGGAAAGGTTTCTTTT  335

seq1  GGCTTGTAATGTCAGAAGTTTCAGTCCATGGCCACTGGGCTCTGCTGCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTAATGTCAGAAGTTTCAGTCCATGGCCACTGGGCTCTGCTGCTT  385

seq1  ACAGGACTGTGATGAGGAAGAAGATCACAGTGGGAACAGGTGGCAGAGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTGTGATGAGGAAGAAGATCACAGTGGGAACAGGTGGCAGAGAG  435

seq1  ATGATGAAGCTAGAGCCAGTCCTACTATCTCCTCTGAGGGCCTGTCCCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAGCTAGAGCCAGTCCTACTATCTCCTCTGAGGGCCTGTCCCTC  485

seq1  CCACTGACTTAACTTCCTTTCAGTAAACCCTGCCTCCTCTTATCCTTGCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGACTTAACTTCCTTTCAGTAAACCCTGCCTCCTCTTATCCTTGCA  535

seq1  CATTCCAGTAGGGCCAGGGGCCTTACCTCTGGGGACATAAAGACCCAGAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGTAGGGCCAGGGGCCTTACCTCTGGGGACATAAAGACCCAGAC  585

seq1  AGTAGCAGAATGGTATGGCCATTTGCTGCAGTGAGCAGTGTACCTGCTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGAATGGTATGGCCATTTGCTGCAGTGAGCAGTGTACCTGCTGT  635

seq1  TGTGTGCTCTACCTACAAGACATGCATAACCGGCCCTGTGCCTACCTACT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTCTACCTACAAGACATGCATAACCGGCCCTGTGCCTACCTACT  685

seq1  TAAGCTTTCCTCTAAAATGTTAAGGTTCTAGTGAGGCCCATGACTGCCTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTCCTCTAAAATGTTAAGGTTCTAGTGAGGCCCATGACTGCCTA  735

seq1  CTGAGAGGCACCACCCTCACGCTCTCACGGGCACCCCTCAGTCCCCCTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGCACCACCCTCACGCTCTCACGGGCACCCCTCAGTCCCCCTTT  785

seq1  CTGCCATTTTTCTGCCTTAGTCACTTTCTTCTCTCACACCACATTTTGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTTTTCTGCCTTAGTCACTTTCTTCTCTCACACCACATTTTGTG  835

seq1  TGTATGTGTTCCAGCAAACATTTATTTCAGAGATAGCCCAGGTCTTGACC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTTCCAGCAAACATTTATTTCAGAGATAGCCCAGGTCTTGACC  885

seq1  TTTAAGGTTTTGTTTGTTTGTGAGATTCTTTCACTCTTACTCTTGATTTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTTTTGTTTGTTTGTGAGATTCTTTCACTCTTACTCTTGATTTA  935

seq1  GAGAGGGTAAATCAGAATAGAGAATGGATTGCATCTTAAGACTTCTTTCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTAAATCAGAATAGAGAATGGATTGCATCTTAAGACTTCTTTCA  985

seq1  CAAAGCTATGGGAAGCATTGAGACTAACTGGTTAATTGTATGGAGTGGTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTATGGGAAGCATTGAGACTAACTGGTTAATTGTATGGAGTGGTG  1035

seq1  TTTTGTTTTCTGTGTGATGTCTGGAATTC  1072
      |||||||||||||||||||||||||||||
seq2  TTTTGTTTTCTGTGTGATGTCTGGAATTC  1064