BAC Information

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BAC

Clone NameB6Ng01-095I16
Chromosome1 (Build37)
Map Location 170,051,074 - 170,230,042
singlet/doubletdoublet
Overlap genePbx1
Upstream geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095I16.bB6Ng01-095I16.g
ACCDH906459DH906460
length1,1441,068
definitionDH906459|Mus musculus domesticus DNA, BAC clone: B6Ng01-095I16, 5' end.DH906460|Mus musculus domesticus DNA, BAC clone: B6Ng01-095I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,051,074 - 170,052,241)(170,228,954 - 170,230,042)
sequence
gaattcctcttggagatgtggtagggattagtcaaaataatacatgtgca
acccctcccacagtgactgacatgtgggagatgctatacctgcaaccatg
ttctctcccctatgcgattagttgtcttgtcacatgcataactcttactt
tgtaaatgcattactttttttgagagttgagagattaccttatatatcta
gctactcaccacattttatattatattgtggtacacagtaaatgctcaag
agtgattatttgattgctggattagtggagaagagaaagaatagtggtta
ttgctttgggactctgtcgatgtaccaatcatctggttacaacatctgct
agctccctgctcaccagccttgttttgtctgatacaagtggccagcagat
atcctctgacttcttcgaaagtccatatgcattcttccagaagtcaggcc
acgggtcaggtagaagaagacttttgttttcagtcaagagaagagagaca
gtaggttcttgtgaggatcagtaggttcttgacatatcctggaaagaaga
caaaactccagtttaattcgcaatgttagcatcttccacccagatcgttc
atcaggactgctatcaaagagtcaaattgaccaatttccatttttatttc
ttttccccaccctctggcaagatctcagtgagcagctaaccagctgaaaa
taggaagagaagcgaaaggcctggacttcaatgactccagagatggctca
tcaggcgccaaaaattgaagttagtttttcattcatgtaatgtagaaaaa
aaaaccctctactgtaaatattagcaagagtttaatggtgtaacctgttt
agagtactacagtttaaggaaaaaggtagctaattttatagcattccctt
acattagattctttaatccttatgacacctctatgattattatatggtcc
atgccttagagatgagacacaatgacctaagacattaacttgttccagca
taacagcttggtgagtctcaaggccaataaccctgtctaccatcttgagt
cattcatctctgccctgggttttgttttgtttgttttttgctcatgctaa
ggatggatgatatattgttccagatccttgaggtcagtaaggct
gaattctccatggcagacttgagatgagtgttctggtcactcaggagtgt
cgcctggatccctggtgattcgcttgatagagcaaatgtctagtgatggg
agtgtgatggtcacactggtgagctagggcctaggaccccctgtggtttt
ctctccattcctgctttagtactttgcctgccataactggtgtcataggt
gaccatgttggggagacctgtagccaatgacatgatgcaggggcccagac
agcctgggtgccacgaatggagcacgtcaaaaggctgtcaacaggggact
ggagcagcaatattcatcctgtctggttgtgaatttcttcatcaatgaca
cgaatataaaagtacttgataaaattatcagcaagagtaaacatatgggt
caaagtgtggcaagccacgagggatgcagaaatgttgttatttgtgtgcg
ttgccgcagaagcaaggctttctaaacctacggtttggctgctttcttcc
aaagacagttgtcctctgatgtcaaaggtgcccatagcagagtgtgctct
gttctctccactcgggaggtgaggtgcggggagtcaccattattagtacc
tcagctctatgccagcctaggctacgaatagcaagttccattctgggtca
tgccaggctacagggtgagataccacttcaaagccagagtagctacaatc
aatgaatgatcaaaaataaaactcctcagttttgccctgctgtatgtaac
agatacgtagaggtttttgatggcctcggtgttccatatttgagtggtac
ttatattcttatattcaagttcaagggatttttagagaatataatactct
attaattctttcaaaatctatgaaatgtattttgattatatttgtgctcc
caggtgcttctagacctccatatctactcagctcgtgtcctactattaat
atttaaagggttatttatgtttatgagtgttctgtgcacgatattgcata
gcacatggtgctgtgtcctgtgacgtcgaagtaaagcatcgaatctgagc
ctgaagaatagatgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170051074_170052241
seq2: B6Ng01-095I16.b_46_1189

seq1  GAATTCCTCTTGGAGATGTGGTAGGGATTAGTCAAAATAATACATGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGGAGATGTGGTAGGGATTAGTCAAAATAATACATGTGCA  50

seq1  ACCCCTCCCACAGTGACTGACATGTGGGAGATGCTATACCTGCAACCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCCCACAGTGACTGACATGTGGGAGATGCTATACCTGCAACCATG  100

seq1  TTCTCTCCCCTATGCGATTAGTTGTCTTGTCACATGCATAACTCTTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCCCTATGCGATTAGTTGTCTTGTCACATGCATAACTCTTACTT  150

seq1  TGTAAATGCATTACTTTTTTTGAGAGTTGAGAGATTACCTTATATATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGCATTACTTTTTTTGAGAGTTGAGAGATTACCTTATATATCTA  200

seq1  GCTACTCACCACATTTTATATTATATTGTGGTACACAGTAAATGCTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCACCACATTTTATATTATATTGTGGTACACAGTAAATGCTCAAG  250

seq1  AGTGATTATTTGATTGCTGGATTAGTGGAGAAGAGAAAGAATAGTGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTATTTGATTGCTGGATTAGTGGAGAAGAGAAAGAATAGTGGTTA  300

seq1  TTGCTTTGGGACTCTGTCGATGTACCAATCATCTGGTTACAACATCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGGGACTCTGTCGATGTACCAATCATCTGGTTACAACATCTGCT  350

seq1  AGCTCCCTGCTCACCAGCCTTGTTTTGTCTGATACAAGTGGCCAGCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTGCTCACCAGCCTTGTTTTGTCTGATACAAGTGGCCAGCAGAT  400

seq1  ATCCTCTGACTTCTTCGAAAGTCCATATGCATTCTTCCAGAAGTCAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGACTTCTTCGAAAGTCCATATGCATTCTTCCAGAAGTCAGGCC  450

seq1  ACGGGTCAGGTAGAAGAAGACTTTTGTTTTCAGTCAAGAGAAGAGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTCAGGTAGAAGAAGACTTTTGTTTTCAGTCAAGAGAAGAGAGACA  500

seq1  GTAGGTTCTTGTGAGGATCAGTAGGTTCTTGACATATCCTGGAAAGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTCTTGTGAGGATCAGTAGGTTCTTGACATATCCTGGAAAGAAGA  550

seq1  CAAAACTCCAGTTTAATTCGCAATGTTAGCATCTTCCACCCAGATCGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCCAGTTTAATTCGCAATGTTAGCATCTTCCACCCAGATCGTTC  600

seq1  ATCAGGACTGCTATCAAAGAGTCAAATTGACCAATTTCCATTTTTATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGACTGCTATCAAAGAGTCAAATTGACCAATTTCCATTTTTATTTC  650

seq1  TTTTCCCCACCCTCTGGCAAGATCTCAGTGAGCAGCTAACCAGCTGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCACCCTCTGGCAAGATCTCAGTGAGCAGCTAACCAGCTGAAAA  700

seq1  TAGGAAGAGAAGCGAAAGGCCTGGACTTCAATGACTCCAGAGATGGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAGAAGCGAAAGGCCTGGACTTCAATGACTCCAGAGATGGCTCA  750

seq1  TCAGGCGCCAAAAATTGAAGTTAGTTTTTCATTCATGTAATGTAGAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCGCCAAAAATTGAAGTTAGTTTTTCATTCATGTAATGTAGAAAAA  800

seq1  AAAACCCTCTACTGTAAATATTAGCAAGAGTTTAATGGTGTAACCTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTCTACTGTAAATATTAGCAAGAGTTTAATGGTGTAACCTGTTT  850

seq1  AGAGTACTACAGTTTAAGGAAAAAGGTAGCTAATTTTATAGCATCCCCTT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAGTACTACAGTTTAAGGAAAAAGGTAGCTAATTTTATAGCATTCCCTT  900

seq1  ACATTAGATTCTTTAATCCTTATGACCACTCTATGAATTAATTAATATGG  950
      ||||||||||||||||||||||||||  ||||||| ||||  | ||||||
seq2  ACATTAGATTCTTTAATCCTTATGACACCTCTATG-ATTA--TTATATGG  947

seq1  TCCATGCCTTAGAGATGAAGACACAAATGAACCTAAGGACATTAACTTGT  1000
      ||||||||||||||||| |||||| |||| |||||| |||||||||||||
seq2  TCCATGCCTTAGAGATG-AGACAC-AATG-ACCTAA-GACATTAACTTGT  993

seq1  TCCAGCATACACAGCTT-GTGAGTCTCAAGCCCAAT-ACACTGTCTACAC  1048
      ||||||||| ||||||| |||||||||||| ||||| || |||||||| |
seq2  TCCAGCATA-ACAGCTTGGTGAGTCTCAAGGCCAATAACCCTGTCTAC-C  1041

seq1  ATCCTTGAGTCCAAATTCATTCCTCTGCACCTGGTTTTG-TTTGTTTGTT  1097
      || ||||||||   ||||||  |||||| |  ||||||| ||||||||||
seq2  AT-CTTGAGTC---ATTCAT--CTCTGCCCTGGGTTTTGTTTTGTTTGTT  1085

seq1  TTTTGCCTCCATTGGTAAAAGGATGGATGATAAATGTTGTCTCCAGATCC  1147
      ||||| |||   || |  |||||||||||||  || |||| |||||||||
seq2  TTTTG-CTC--ATGCT--AAGGATGGATGAT--ATATTGT-TCCAGATCC  1127

seq1  TCTTGGAGGTCAGTAAAGGCT  1168
         | ||||||||| ||||||
seq2  ---TTGAGGTCAGT-AAGGCT  1144

seq1: chr1_170228954_170230042
seq2: B6Ng01-095I16.g_66_1133 (reverse)

seq1  AACTCATCTATTCCTCCAGCTCCAAGGAATCTGATGCTCTACTCTGACGT  50
      ||||||||||||| ||  ||||  ||  ||  |||||| ||||  |||||
seq2  AACTCATCTATTCTTCAGGCTC--AG--ATTCGATGCTTTACTTCGACGT  46

seq1  CACA-GACACCAGGCACACATGTGCTATGCAAATATCCGTGCACCAGGAA  99
      |||| |||||   |||| |||||||||||| ||||| |||||||   |||
seq2  CACAGGACAC--AGCAC-CATGTGCTATGC-AATAT-CGTGCAC--AGAA  89

seq1  CACTCATAAACATAAAATAAACACCTTTTAAATATAAATAGTAAGGACAC  149
      ||||||||||||| |||||   ||| ||||||||| |||||| |||||||
seq2  CACTCATAAACAT-AAATA---ACCCTTTAAATATTAATAGT-AGGACAC  134

seq1  GAGGCTGGAAGTAGATATGGAGGTCTAGGAAGCACCTGGGAGGCACAAAT  199
      || ||||  |||||||||||||||||| ||||||||||||| ||||||||
seq2  GA-GCTG--AGTAGATATGGAGGTCTA-GAAGCACCTGGGA-GCACAAAT  179

seq1  ATAATCAAAATACATTTCATAAGATTTTGAAAGAATTAATAAGAGTATTA  249
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  ATAATCAAAATACATTTCAT-AGATTTTGAAAGAATTAAT-AGAGTATTA  227

seq1  TATTCTCTAAAAAATCCCTTGAACTTGAATATAAGAATATAAGTA-CACT  298
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  TATTCTCT-AAAAATCCCTTGAACTTGAATATAAGAATATAAGTACCACT  276

seq1  CAAATATGGAACACCGAGGCCATCAAAAACCTCTACGTATCTGTTACATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGGAACACCGAGGCCATCAAAAACCTCTACGTATCTGTTACATA  326

seq1  CAGCAGGGCAAAACTGAGGAGTTTTATTTTTGATCATTCATTGATTGTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGCAAAACTGAGGAGTTTTATTTTTGATCATTCATTGATTGTAG  376

seq1  CTACTCTGGCTTTGAAGTGGTATCTCACCCTGTAGCCTGGCATGACCCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGGCTTTGAAGTGGTATCTCACCCTGTAGCCTGGCATGACCCAG  426

seq1  AATGGAACTTGCTATTCGTAGCCTAGGCTGGCATAGAGCTGAGGTACTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAACTTGCTATTCGTAGCCTAGGCTGGCATAGAGCTGAGGTACTAA  476

seq1  TAATGGTGACT-CCCGCACCTCACCTCCCGAGTGGAGAGAACAGAGCACA  547
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGACTCCCCGCACCTCACCTCCCGAGTGGAGAGAACAGAGCACA  526

seq1  CTCTGCTATGGGCACCTTTGACATCAGAGGACAACTGTCTTTGGAAGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTATGGGCACCTTTGACATCAGAGGACAACTGTCTTTGGAAGAAA  576

seq1  GCAGCCAAACCGTAGGTTTAGAAAGCCTTGCTTCTGCGGCAACGCACACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAAACCGTAGGTTTAGAAAGCCTTGCTTCTGCGGCAACGCACACA  626

seq1  AATAACAACATTTCTGCATCCCTCGTGGCTTGCCACACTTTGACCCATAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAACATTTCTGCATCCCTCGTGGCTTGCCACACTTTGACCCATAT  676

seq1  GTTTACTCTTGCTGATAATTTTATCAAGTACTTTTATATTCGTGTCATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTCTTGCTGATAATTTTATCAAGTACTTTTATATTCGTGTCATTG  726

seq1  ATGAAGAAATTCACAACCAGACAGGATGAATATTGCTGCTCCAGTCCCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAATTCACAACCAGACAGGATGAATATTGCTGCTCCAGTCCCCT  776

seq1  GTTGACAGCCTTTTGACGTGCTCCATTCGTGGCACCCAGGCTGTCTGGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAGCCTTTTGACGTGCTCCATTCGTGGCACCCAGGCTGTCTGGGC  826

seq1  CCCTGCATCATGTCATTGGCTACAGGTCTCCCCAACATGGTCACCTATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATCATGTCATTGGCTACAGGTCTCCCCAACATGGTCACCTATGA  876

seq1  CACCAGTTATGGCAGGCAAAGTACTAAAGCAGGAATGGAGAGAAAACCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTTATGGCAGGCAAAGTACTAAAGCAGGAATGGAGAGAAAACCAC  926

seq1  AGGGGGTCCTAGGCCCTAGCTCACCAGTGTGACCATCACACTCCCATCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTCCTAGGCCCTAGCTCACCAGTGTGACCATCACACTCCCATCAC  976

seq1  TAGACATTTGCTCTATCAAGCGAATCACCAGGGATCCAGGCGACACTCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTTGCTCTATCAAGCGAATCACCAGGGATCCAGGCGACACTCCT  1026

seq1  GAGTGACCAGAACACTCATCTCAAGTCTGCCATGGAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACCAGAACACTCATCTCAAGTCTGCCATGGAGAATTC  1068