BAC Information

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BAC

Clone NameB6Ng01-095P18
Chromosome1 (Build37)
Map Location 22,676,708 - 22,809,589
singlet/doubletdoublet
Overlap geneRims1
Upstream geneKcnq5, LOC435612, LOC100040338, Rims1
Downstream geneEG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095P18.bB6Ng01-095P18.g
ACCDH906773DH906774
length1,104571
definitionDH906773|Mus musculus domesticus DNA, BAC clone: B6Ng01-095P18, 5' end.DH906774|Mus musculus domesticus DNA, BAC clone: B6Ng01-095P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,676,708 - 22,677,820)(22,809,017 - 22,809,589)
sequence
gaattcccttttccagtgaattaggattggcttctacctaacttgaaata
gtgcaagtatatgatgttagtttaggacataaatatacttccacccctct
tgtcccttgaatcactcactctggtgagggctagctgcagtgtgctaaga
acatacaagcactatcattgagatattctctaatatatatataatatata
tatacattatatatattatatttatatgtgtgtgtgtgtgtgtgtaacac
attaagttcagctctgtgagtctttggaaatggaccttgaattctcaaca
agcatgtagtatatagtgaccatcaacctcagatgacactcactggaaaa
aaaaagtttctgatccataaaaaacatcagagaataatgcatgtttatat
ttgctttaagttgccaagattcagggtataatcaataaataattaaaaaa
aaacagtaaaagtctgaggcatcaactcaacatgtagaatttctagagaa
aatattatttttataaatacgtccaattatgtttctatgggtatcactga
acacattgtagtatgagtagagtaattatgtatgagagaacatgtgcatt
ccaattaaactatcacttggagatataagaaagtttagtgaagctattag
cttcacttggcaggagcagcagacagagaacatgagagttaattaatgcg
ctttgaatttcagctctgccacccacctaagtcattatagtttttactgg
gatgccctactaaccatcactgggttggaaaatatgtagggaagaaatgt
gcacactgttctaaaccacatgccaggaccatagagtaaagaccacagat
ttaaggaaagccttgttcaaatctcatctctgtcacttacagtttatgga
acactggatacagtactctttctgaatatcacacaaaggaggcattatga
gacagatagagtatacacagtccctatccaatagaacaccatagcatatt
acagcatatttcatgatgttatttaactccggagttatttaatctatcaa
gttgaaacctaaaaaagaagttcttgtattttatgaactattacataaaa
attc
ttctccacaagatagaacagcaaacattcatagagagaatgaaaaagtag
atggatattatatgtagtaccgtctaacaaatacaaatcagaatatattt
gtatagttagccttgacttcaagttactgctgaaatctaaattcgataat
gacattaaataggtttaaatagggaaaaatcattttacttccagttcaag
aatttaaaaatgttacatgaagttgggagtattttatcctcatggtcaca
ttagttttgtaaaaatctactaattttaagtaatattgtttataattaga
aaaaaatggctctcaagaattatattttatgattgacgtaactgtttgta
aaatgggtcttaatttttggttgtgtgtgtgtgtgtgtgtgtgtgtgtag
tgtgtcctggaactttttttgaaactccactttttcaatgaatgttcctt
caagtacctgtcaccaggcatcatgggtcaatatattacaaaagacagaa
aacttgttatctgagccctaaatcagggaaagatctctttagagggtaca
aatcttattctgtttcttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_22676708_22677820
seq2: B6Ng01-095P18.b_47_1150

seq1  GAATTCCCTTTTCCAGTGAATTAGGATTGGCTTCTACCTAACTTGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTTCCAGTGAATTAGGATTGGCTTCTACCTAACTTGAAATA  50

seq1  GTGCAAGTATATGATGTTAGTTTAGGACATAAATATACTTCCACCCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGTATATGATGTTAGTTTAGGACATAAATATACTTCCACCCCTCT  100

seq1  TGTCCCTTGAATCACTCACTCTGGTGAGGGCTAGCTGCAGTGTGCTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTGAATCACTCACTCTGGTGAGGGCTAGCTGCAGTGTGCTAAGA  150

seq1  ACATACAAGCACTATCATTGAGATATTCTCTAATATATATATAATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAAGCACTATCATTGAGATATTCTCTAATATATATATAATATATA  200

seq1  TATACATTATATATATTATATTTATATGTGTGTGTGTGTGTGTGTAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTATATATATTATATTTATATGTGTGTGTGTGTGTGTGTAACAC  250

seq1  ATTAAGTTCAGCTCTGTGAGTCTTTGGAAATGGACCTTGAATTCTCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTCAGCTCTGTGAGTCTTTGGAAATGGACCTTGAATTCTCAACA  300

seq1  AGCATGTAGTATATAGTGACCATCAACCTCAGATGACACTCACTGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTAGTATATAGTGACCATCAACCTCAGATGACACTCACTGGAAAA  350

seq1  AAAAAGTTTCTGATCCATAAAAAACATCAGAGAATAATGCATGTTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTTCTGATCCATAAAAAACATCAGAGAATAATGCATGTTTATAT  400

seq1  TTGCTTTAAGTTGCCAAGATTCAGGGTATAATCAATAAATAATTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTAAGTTGCCAAGATTCAGGGTATAATCAATAAATAATTAAAAAA  450

seq1  AAACAGTAAAAGTCTGAGGCATCAACTCAACATGTAGAATTTCTAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAAAAGTCTGAGGCATCAACTCAACATGTAGAATTTCTAGAGAA  500

seq1  AATATTATTTTTATAAATACGTCCAATTATGTTTCTATGGGTATCACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTTTTATAAATACGTCCAATTATGTTTCTATGGGTATCACTGA  550

seq1  ACACATTGTAGTATGAGTAGAGTAATTATGTATGAGAGAACATGTGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGTAGTATGAGTAGAGTAATTATGTATGAGAGAACATGTGCATT  600

seq1  CCAATTAAACTATCACTTGGAGATATAAGAAAGTTTAGTGAAGCTATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAAACTATCACTTGGAGATATAAGAAAGTTTAGTGAAGCTATTAG  650

seq1  CTTCACTTGGCAGGAGCAGCAGACAGAGAACATGAGAGTTAATTAATGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTGGCAGGAGCAGCAGACAGAGAACATGAGAGTTAATTAATGCG  700

seq1  CTTTGAATTTCAGCTCTGCCACCCACCTAAGTCATTATAGTTTTTACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATTTCAGCTCTGCCACCCACCTAAGTCATTATAGTTTTTACTGG  750

seq1  GATGCCCTACTAACCATCACTGGGTTGGAAAATATGTAGGGAAGAAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTACTAACCATCACTGGGTTGGAAAATATGTAGGGAAGAAATGT  800

seq1  GCACACTGTTCTAAAACCACATGCCAGGACCATAGAGTAAAGACCACAGA  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCACACTGTTCT-AAACCACATGCCAGGACCATAGAGTAAAGACCACAGA  849

seq1  TTTAAGGAAAGCCTTGTTCAAATCTCATCTCTGTCACTTACAGTTTATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAAAGCCTTGTTCAAATCTCATCTCTGTCACTTACAGTTTATGG  899

seq1  AACACTGGATACAGTACTCTTTCTGAATATCACACAAAGGAGGCATTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGATACAGTACTCTTTCTGAATATCACACAAAGGAGGCATTATG  949

seq1  AGACAGATAGAGTATACACAGTCCCTATCCAATAGAACA-CATAGCATAT  999
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGACAGATAGAGTATACACAGTCCCTATCCAATAGAACACCATAGCATAT  999

seq1  TACAGCATATTTTCATGTATGTTATTTAACT-CTGAGTTATTTTAATTCT  1048
      ||||||||| ||||||| ||||||||||||| | |||||||||  | |||
seq2  TACAGCATA-TTTCATG-ATGTTATTTAACTCCGGAGTTATTT--AATCT  1045

seq1  ATCAAGTTGATACTTAAAAAAGAAATTCTTTGTATTTTAGTGAAACTATT  1098
      |||||||||| || |||||||||| ||| |||||||||| || |||||||
seq2  ATCAAGTTGAAACCTAAAAAAGAAGTTC-TTGTATTTTA-TG-AACTATT  1092

seq1  TAACATAAAATATTC  1113
        |||||||| ||||
seq2  --ACATAAAA-ATTC  1104

seq1: chr1_22809017_22809589
seq2: B6Ng01-095P18.g_68_644 (reverse)

seq1  TTTAAGAAACAGAATAAGATTTGTA-CCTCTAATGAGATC-TTCCCTGAT  48
      ||||||||||||||||||||||||| ||||||| |||||| |||||||||
seq2  TTTAAGAAACAGAATAAGATTTGTACCCTCTAAAGAGATCTTTCCCTGAT  50

seq1  TTAGGGCTCAGATAACAAGTTTTCTGTC-TTTGTAATATATTGACCCATG  97
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTAGGGCTCAGATAACAAGTTTTCTGTCTTTTGTAATATATTGACCCATG  100

seq1  ATGCCTGGTGACAGGTACTTGAAGGAACATTCATTGAAAAAGTGGAGTTT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGTGACAGGTACTTGAAGGAACATTCATTGAAAAAGTGGAGTTT  150

seq1  C-AAAAAAGTTCCAGGACACACTACACACACACACACACACACACACACA  196
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAGTTCCAGGACACACTACACACACACACACACACACACACACA  200

seq1  ACCAAAAATTAAGACCCATTTTACAAACAGTTACGTCAATCATAAAATAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAATTAAGACCCATTTTACAAACAGTTACGTCAATCATAAAATAT  250

seq1  AATTCTTGAGAGCCATTTTTTTCTAATTATAAACAATATTACTTAAAATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGAGAGCCATTTTTTTCTAATTATAAACAATATTACTTAAAATT  300

seq1  AGTAGATTTTTACAAAACTAATGTGACCATGAGGATAAAATACTCCCAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATTTTTACAAAACTAATGTGACCATGAGGATAAAATACTCCCAAC  350

seq1  TTCATGTAACATTTTTAAATTCTTGAACTGGAAGTAAAATGATTTTTCCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTAACATTTTTAAATTCTTGAACTGGAAGTAAAATGATTTTTCCC  400

seq1  TATTTAAACCTATTTAATGTCATTATCGAATTTAGATTTCAGCAGTAACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAACCTATTTAATGTCATTATCGAATTTAGATTTCAGCAGTAACT  450

seq1  TGAAGTCAAGGCTAACTATACAAATATATTCTGATTTGTATTTGTTAGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCAAGGCTAACTATACAAATATATTCTGATTTGTATTTGTTAGAC  500

seq1  GGTACTACATATAATATCCATCTACTTTTTCATTCTCTCTATGAATGTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTACATATAATATCCATCTACTTTTTCATTCTCTCTATGAATGTTT  550

seq1  GCTGTTCTATCTTGTGGAGAAGAATTC  573
      |||||||||||||||||||||||||||
seq2  GCTGTTCTATCTTGTGGAGAAGAATTC  577