BAC Information

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BAC

Clone NameB6Ng01-096B08
Chromosome1 (Build37)
Map Location 168,117,899 - 168,254,284
singlet/doubletdoublet
Overlap geneMael, LOC100039795
Upstream geneSft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33
Downstream geneTada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096B08.bB6Ng01-096B08.g
ACCDH906842DH906843
length1,101820
definitionDH906842|Mus musculus domesticus DNA, BAC clone: B6Ng01-096B08, 5' end.DH906843|Mus musculus domesticus DNA, BAC clone: B6Ng01-096B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,253,183 - 168,254,284)(168,117,899 - 168,118,706)
sequence
gaattctcctgaagagggaaggcaccttgcccaacatccagtatttttct
caaaattatctagaacagtgattctcaacctttccaatacttcaaccctt
taatacagatcctcgtgtcgtgagttccccctccaaccataaaattattt
gtgttgctactacataactgtagttttgctactgttatgaatcacagtat
aagtatttttggagatagaggtttgccaaagggctcgatggagatgcaca
ggttgagcaccttaaatctagagcctctggcaacaaagcagaaaattaat
acagtagaacacagcgtctgcagtgggagaggagacatggagatactgga
gcgatcaaggaaagacactaaaggtcttttctaaccaaggtggcggcaca
gatgggtttataagtccaaaacaagtgaagccaagaagttgtccggggct
ttagtgggatttgtcactgagctgcagtggaaataacctctctggtgccc
tgggtgaggatgctctgtctggcagcagagcagagctggagagctgcttt
tttatgcttttataaccacaggagaaaaatatggatgcagcagtagataa
ctgttattaatcatggttttttgtttggttttcccatttctattagtatc
ttttacctcctttgggtgagttgtttttttatcccactgtgttagatttt
caccactataatgaaaatattagaaataatgaatttataaagagaagaca
tttattaggttttggaagttccagcccatggtcaattggccctcttgctt
tgatgagccaggaagtagagaagggctaaacacccacaattccccaaaag
gaaacacccctaatgatcaaaggatcatttcccagccaacactgtctccc
aaagttccagggcctcccaatagttccaaagcatttgacactagagcctt
tgggtgatactcctgttgtaggcggatttgcctctttctgatcacatggt
tatttaaaatatgagcacgggactcaacacgggtaaatgagtggactagg
attgtcttttagtaaagtcattcttcatgttctgatggatacattcataa
a
gaattctttaaatttatgattgtagaaagtaaccatagcaattcattgac
tcttgaaaagacactacaacagcccacatgattaacttaaaataggtaaa
tgaaataatacttgttttctttttcctcagtggctatgatgatgtagggg
gagtcagagggactgtttttttgtaaaagtactttagcttggaaaaagaa
agaaaaaggcggtttttcaggttctgctaaagtagtgtgtgtggccaagg
atcaccactctttaaagtaaccaaatagtcctctcattacgagtgcaaat
atcacatgaaaaaaaaaacaagattgaaaaactatatatatgatccagca
cctgggtataactatcagttcatgggtgttacagggaatgaatatgttga
atgatctgtgaaggcaaacaaaatcaatattgtgccaaactacagagctt
attttccaactcaaaccttaaatttagatggtaaattggtgtcttagggt
ttctattgctgcgacgaaacaccatgaccaaagagcaagttggggaggaa
agggctttttggggtttccctataactgttcatcactgaaggaagtcact
gcaggaattggaacaggacaggaacctggaggcaggagctgatgcagagg
caatggagggatgctgttactggctgggttcacatggcttgctcagactg
ctttcttatagaacccaggaccaccagggtggacaatggactctcccctc
ccacactgacactgagtaaatggctgacagttggaaatcccatggaggca
tttcctcgactgagctcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_168253183_168254284
seq2: B6Ng01-096B08.b_44_1144 (reverse)

seq1  TTTATGAATGTATCCAATCAG-ACATG-AGAATGACTTTACTAAAAGAAC  48
      ||||||||||||||| ||||| ||||| ||||||||||||||||||| ||
seq2  TTTATGAATGTATCC-ATCAGAACATGAAGAATGACTTTACTAAAAG-AC  48

seq1  AATCCTAGT-CACTCATTTACCCGTGTTGAGTCCCGTGCTCATATTTTAA  97
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAGTCCACTCATTTACCCGTGTTGAGTCCCGTGCTCATATTTTAA  98

seq1  ATAACCATTGTGATCAGAAAGAGGCAAATCCGCCTACACCAGGAGTATCA  147
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  ATAACCA-TGTGATCAGAAAGAGGCAAATCCGCCTACAACAGGAGTATCA  147

seq1  CCCAAAGGCTCTAGTGTCAAATGCTTTTGGAACTATTGGGAGGCCCTGGA  197
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCAAAGGCTCTAGTGTCAAATGC-TTTGGAACTATTGGGAGGCCCTGGA  196

seq1  ACTTTGGGAGACAGTGTTGGCTGGGAAATGATCCTTTGATCATTAGGGGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGAGACAGTGTTGGCTGGGAAATGATCCTTTGATCATTAGGGGT  246

seq1  GTTTCCTTTTGGGGAATTGTGGGTGTTTAGCCCTTCTCTACTTCCTGGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTTGGGGAATTGTGGGTGTTTAGCCCTTCTCTACTTCCTGGCT  296

seq1  CATCAAAGCAAGAGGGCCAATTGACCATGGGCTGGAACTTCCAAAACCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGCAAGAGGGCCAATTGACCATGGGCTGGAACTTCCAAAACCTA  346

seq1  ATAAATGTCTTCTCTTTATAAATTCATTATTTCTAATATTTTCATTATAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTCTTCTCTTTATAAATTCATTATTTCTAATATTTTCATTATAG  396

seq1  TGGTGAAAATCTAACACAGTGGGATAAAAAAACAACTCACCCAAAGGAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAAATCTAACACAGTGGGATAAAAAAACAACTCACCCAAAGGAGG  446

seq1  TAAAAGATACTAATAGAAATGGGAAAACCAAACAAAAAACCATGATTAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATACTAATAGAAATGGGAAAACCAAACAAAAAACCATGATTAAT  496

seq1  AACAGTTATCTACTGCTGCATCCATATTTTTCTCCTGTGGTTATAAAAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTATCTACTGCTGCATCCATATTTTTCTCCTGTGGTTATAAAAGC  546

seq1  ATAAAAAAGCAGCTCTCCAGCTCTGCTCTGCTGCCAGACAGAGCATCCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAGCAGCTCTCCAGCTCTGCTCTGCTGCCAGACAGAGCATCCTC  596

seq1  ACCCAGGGCACCAGAGAGGTTATTTCCACTGCAGCTCAGTGACAAATCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGCACCAGAGAGGTTATTTCCACTGCAGCTCAGTGACAAATCCC  646

seq1  ACTAAAGCCCCGGACAACTTCTTGGCTTCACTTGTTTTGGACTTATAAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGCCCCGGACAACTTCTTGGCTTCACTTGTTTTGGACTTATAAAC  696

seq1  CCATCTGTGCCGCCACCTTGGTTAGAAAAGACCTTTAGTGTCTTTCCTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTGCCGCCACCTTGGTTAGAAAAGACCTTTAGTGTCTTTCCTTG  746

seq1  ATCGCTCCAGTATCTCCATGTCTCCTCTCCCACTGCAGACGCTGTGTTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTCCAGTATCTCCATGTCTCCTCTCCCACTGCAGACGCTGTGTTCT  796

seq1  ACTGTATTAATTTTCTGCTTTGTTGCCAGAGGCTCTAGATTTAAGGTGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTAATTTTCTGCTTTGTTGCCAGAGGCTCTAGATTTAAGGTGCT  846

seq1  CAACCTGTGCATCTCCATCGAGCCCTTTGGCAAACCTCTATCTCCAAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTGCATCTCCATCGAGCCCTTTGGCAAACCTCTATCTCCAAAAA  896

seq1  TACTTATACTGTGATTCATAACAGTAGCAAAACTACAGTTATGTAGTAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATACTGTGATTCATAACAGTAGCAAAACTACAGTTATGTAGTAGC  946

seq1  AACACAAATAATTTTATGGTTGGAGGGGGAACTCACGACACGAGGATCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAATAATTTTATGGTTGGAGGGGGAACTCACGACACGAGGATCTG  996

seq1  TATTAAAGGGTTGAAGTATTGGAAAGGTTGAGAATCACTGTTCTAGATAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGGGTTGAAGTATTGGAAAGGTTGAGAATCACTGTTCTAGATAA  1046

seq1  TTTTGAGAAAAATACTGGATGTTGGGCAAGGTGCCTTCCCTCTTCAGGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAAAAATACTGGATGTTGGGCAAGGTGCCTTCCCTCTTCAGGAG  1096

seq1  AATTC  1102
      |||||
seq2  AATTC  1101

seq1: chr1_168117899_168118706
seq2: B6Ng01-096B08.g_70_877

seq1  GAATTCTTTAAATTTATGATTGTAGAAAGTAACCATAGCAATTCATTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAATTTATGATTGTAGAAAGTAACCATAGCAATTCATTGAC  50

seq1  TCTTGAAAAGACACTACAACAGCCCACATGATTAACTTAAAATAGGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAGACACTACAACAGCCCACATGATTAACTTAAAATAGGTAAA  100

seq1  TGAAATAATACTTGTTTTCTTTTTCCTCAGTGGCTATGATGATGTAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAATACTTGTTTTCTTTTTCCTCAGTGGCTATGATGATGTAGGGG  150

seq1  GAGTCAGAGGGACTGTTTTTTTGTAAAAGTACTTTAGCTTGGAAAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAGGGACTGTTTTTTTGTAAAAGTACTTTAGCTTGGAAAAAGAA  200

seq1  AGAAAAAGGCGGTTTTTCAGGTTCTGCTAAAGTAGTGTGTGTGGCCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGGCGGTTTTTCAGGTTCTGCTAAAGTAGTGTGTGTGGCCAAGG  250

seq1  ATCACCACTCTTTAAAGTAACCAAATAGTCCTCTCATTACGAGTGCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCACTCTTTAAAGTAACCAAATAGTCCTCTCATTACGAGTGCAAAT  300

seq1  ATCACATGAAAAAAAAAACAAGATTGAAAAACTATATATATGATCCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATGAAAAAAAAAACAAGATTGAAAAACTATATATATGATCCAGCA  350

seq1  CCTGGGTATAACTATCAGTTCATGGGTGTTACAGGGAATGAATATGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTATAACTATCAGTTCATGGGTGTTACAGGGAATGAATATGTTGA  400

seq1  ATGATCTGTGAAGGCAAACAAAATCAATATTGTGCCAAACTACAGAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGTGAAGGCAAACAAAATCAATATTGTGCCAAACTACAGAGCTT  450

seq1  ATTTTCCAACTCAAACCTTAAATTTAGATGGTAAATTGGTGTCTTAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAACTCAAACCTTAAATTTAGATGGTAAATTGGTGTCTTAGGGT  500

seq1  TTCTATTGCTGCGACGAAACACCATGACCAAAGAGCAAGTTGGGGAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTGCTGCGACGAAACACCATGACCAAAGAGCAAGTTGGGGAGGAA  550

seq1  AGGGCTTTTTGGGGTTTCCCTATAACTGTTCATCACTGAAGGAAGTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTTTGGGGTTTCCCTATAACTGTTCATCACTGAAGGAAGTCACT  600

seq1  GCAGGAATTGGAACAGGACAGGAACCTGGAGGCAGGAGCTGATGCAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATTGGAACAGGACAGGAACCTGGAGGCAGGAGCTGATGCAGAGG  650

seq1  CAATGGAGGGATGCTGTTACTGGCTGGGTTCACATGGCTTGCTCAGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGGGATGCTGTTACTGGCTGGGTTCACATGGCTTGCTCAGACTG  700

seq1  CTTTCTTATAGAACCCAGGACCACCAGGGTGGACAATGGACTCTCCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTATAGAACCCAGGACCACCAGGGTGGACAATGGACTCTCCCCTC  750

seq1  CCGCACTGACACTGAGTAAATGGCTGACAGTTGGAAATCCCATGGAGGCA  800
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGACACTGAGTAAATGGCTGACAGTTGGAAATCCCATGGAGGCA  800

seq1  TTTCCTCG  808
      ||||||||
seq2  TTTCCTCG  808