BAC Information

Click to search

BAC

Clone NameB6Ng01-096B18
Chromosome1 (Build37)
Map Location 106,476,426 - 106,477,504
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383546
Downstream geneLOC100041134, Cdh20, Rnf152, LOC100041985, Pign
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096B18.bB6Ng01-096B18.g
ACCDH906862DH906863
length7201,066
definitionDH906862|Mus musculus domesticus DNA, BAC clone: B6Ng01-096B18, 5' end.DH906863|Mus musculus domesticus DNA, BAC clone: B6Ng01-096B18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctgatctcctttaattattgctgtggctagaacttccagtat
tatattgaataggtatggagaaagtgaacagccttgtcatgtttctgatt
ttagcggaattatttgagcttttttccatttaatttgatgttggatacat
gcttgtggtaaattgccttaagtaagtataggtatttctcctgtatcctt
gatctcttcaagacttttaatataatagtatgttggattttgtcaaaggc
attttcagcatctaattaaatgatcatatgattttttttcttttagattg
tttatatgctggactttcttatgttaacagattttcttatgttgatccat
ctatgcatctctggaatgaagcctactttatcatggtagatgatttttct
gaagtgtttatgcatttagcttgcaggtgttttaaaagtatttttgcatc
tatgtccatgagggaaattggtctataattttctttctttggtgaatctt
tatgtggattgagtttcagggtaacagtggacacataaaaaaattggtga
tggtttttctgtttctattttatggaatagtttgaggcacattggtctaa
gctcttctttcaacgtctgatagaattctgtgctaaaactgtctggccct
ggacttttattattattaattattattattattattattattattattat
tatttgttgttgttgttgtg

gaattcagtcctcaggacccattcacatactggaaggggagaaccactgt
ctgcaagttgtcctccaacctccacatgaatgctatcacagacacacata
gatccagacacagacacagacagacacagacagacagacagacagacaga
cacacacacacacacacacacacacacacactaaatatagataagtaagt
aaataaataaattcaataaaaataaggaagtaggggaatctaccaaggtc
acaagaggaatattttaagaaactgttctaaatgtcacaaaggggaataa
ttatactaatttctgccaactctctagcataagaaagttgccctcagatc
cttggagcttacctcttgcagctcattgttttctagcttgcttctttagt
ctgcaactacagccattgagatggaaccctgaagggacagaaaagaggct
tctaacatagccacatgatctgcagaaagatattcagaacatgtgatctg
tcttttgcttctacttagaactgtgaaagagaccactgaagcatgggaat
aactcaaaggagcagcaaccaatactggcacagctgctaacaagaagtgt
ataatttatctattactgtagcaagaaaacccaggctgacttaaaaacac
ccatatttatctcctcagtgatgtacaggccttaattgcttcccctgctt
cagagtctctcaaaagactgataccaagttattacctaggtctgatgtct
caccttcaggttcaactgtggattaatcctcttctgaacctatacaagtt
gaggtcagggcctccattcttatttatggcttgcagctacttatggtttg
gtcatatgatccttccaacatagagcagtgtacaccatgacagtttgtgc
cattaaatctagcactctaaaaatgaaagagagttatgctcttctgtgaa
atcccatcatccatcattatgtagttcatttgttatgagcaagtcacaga
ggcaacccacatcaggggacaggatgaccaggcaggcatgacatcagacc
aggagatagatcaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106476426_106477504
seq2: B6Ng01-096B18.g_70_1135

seq1  GAATTCAGTCCTCAGGACCCATTCACATACTGGAAGGGGAGAACCACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCTCAGGACCCATTCACATACTGGAAGGGGAGAACCACTGT  50

seq1  CTGCAAGTTGTCCTCCAACCTCCACATGAATGCTATCACAGACACACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGTTGTCCTCCAACCTCCACATGAATGCTATCACAGACACACATA  100

seq1  GATCCAGACACAGACACAGACAGACACAGACAGACAGACAGACAGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGACACAGACACAGACAGACACAGACAGACAGACAGACAGACAGA  150

seq1  CACACACACACACACACACACACACACACACTAAATATAGATAAGTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACTAAATATAGATAAGTAAGT  200

seq1  AAATAAATAAATTCAATAAAAATAAGGAAGTAGGGGAATCTACCAAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATTCAATAAAAATAAGGAAGTAGGGGAATCTACCAAGGTC  250

seq1  ACAAGAGGAATATTTTAAGAAACTGTTCTAAATGTCACAAAGGGGAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGAATATTTTAAGAAACTGTTCTAAATGTCACAAAGGGGAATAA  300

seq1  TTATACTAATTTCTGCCAACTCTCTAGCATAAGAAAGTTGCCCTCAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTAATTTCTGCCAACTCTCTAGCATAAGAAAGTTGCCCTCAGATC  350

seq1  CTTGGAGCTTACCTCTTGCAGCTCATTGTTTTCTAGCTTGCTTCTTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCTTACCTCTTGCAGCTCATTGTTTTCTAGCTTGCTTCTTTAGT  400

seq1  CTGCAACTACAGCCATTGAGATGGAACCCTGAAGGGACAGAAAAGAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTACAGCCATTGAGATGGAACCCTGAAGGGACAGAAAAGAGGCT  450

seq1  TCTAACATAGCCACATGATCTGCAGAAAGATATTCAGAACATGTGATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACATAGCCACATGATCTGCAGAAAGATATTCAGAACATGTGATCTG  500

seq1  TCTTTTGCTTCTACTTAGAACTGTGAAAGAGACCACTGAAGCATGGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCTTCTACTTAGAACTGTGAAAGAGACCACTGAAGCATGGGAAT  550

seq1  AACTCAAAGGAGCAGCAACCAATACTGGCACAGCTGCTAACAAGAAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAAGGAGCAGCAACCAATACTGGCACAGCTGCTAACAAGAAGTGT  600

seq1  ATAATTTATCTATTACTGTAGCAAGAAAACCCAGGCTGACTTAAAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATCTATTACTGTAGCAAGAAAACCCAGGCTGACTTAAAAACAC  650

seq1  CCATATTTATCTCCTCAGTGATGTACAGGCCTTAATTGCTTCCCCTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTATCTCCTCAGTGATGTACAGGCCTTAATTGCTTCCCCTGCTT  700

seq1  CAGAGTCTCTCAAAAGACTGATACCAAGTTATTACCTAGGTCTGATGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTCTCAAAAGACTGATACCAAGTTATTACCTAGGTCTGATGTCT  750

seq1  CACCTTCAGGTTCAACTGTGGATTAATCCTCTTCTGAACCTATACAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCAGGTTCAACTGTGGATTAATCCTCTTCTGAACCTATACAAGTT  800

seq1  GAGGTCAGGGCCTCCATTCTTATTTTATGGCTTGCAGCTACTTATGGTTT  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGGTCAGGGCCTCCATTCTTA-TTTATGGCTTGCAGCTACTTATGGTTT  849

seq1  GGTCATATGATCCTTCCAACATAGAGCAGTGTACACCATGACAGTTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATATGATCCTTCCAACATAGAGCAGTGTACACCATGACAGTTTGTG  899

seq1  CCATTAAATCTAGCAACTCTAAAAATGAAAGAGAAGTTATGCTCTTCTGT  950
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  CCATTAAATCTAGC-ACTCTAAAAATGAAAGAG-AGTTATGCTCTTCTGT  947

seq1  GACATCCCATCATCCATCATTATTGTAGTTCATTTGTTAATGAGCAAGTC  1000
      || ||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  GAAATCCCATCATCCATCATTA-TGTAGTTCATTTGTT-ATGAGCAAGTC  995

seq1  ACAGAGGCAACCCACATTCAAGGGGACAGGATGACACAAGGGCAGGCATG  1050
      |||||||||||||||||   ||||||||||||||| ||  ||||||||||
seq2  ACAGAGGCAACCCACAT--CAGGGGACAGGATGAC-CA--GGCAGGCATG  1040

seq1  ACATCAGACCAGGAGATAAGGAATCAAAG  1079
      ||||||||||||||||||    |||||||
seq2  ACATCAGACCAGGAGATA---GATCAAAG  1066


| Home | SequenceCutter | Blast | Download |