BAC Information

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BAC

Clone NameB6Ng01-096J17
Chromosome1 (Build37)
Map Location 192,623,430 - 192,790,712
singlet/doubletdoublet
Overlap geneRps6kc1, Angel2, Vash2
Upstream genePtpn14, LOC100042438, Smyd2, Prox1, LOC100039394, EG666975
Downstream geneLOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096J17.bB6Ng01-096J17.g
ACCDH907210DH907211
length9091,129
definitionDH907210|Mus musculus domesticus DNA, BAC clone: B6Ng01-096J17, 5' end.DH907211|Mus musculus domesticus DNA, BAC clone: B6Ng01-096J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(192,789,801 - 192,790,712)(192,623,430 - 192,624,556)
sequence
gaattctagtctgagggtggaggtggaggtacgtcagggcctgtgtagac
gggactgaggactagtcgcttttggcagctaaatttagtggtcaagactg
actctcaggccaggtgtggtgacatacagctttaatcccagcacttgaga
ggcaggtagatctctgagtttgaggccagcctggtttacattaaaagttc
cagaacagccaggggctaaatagagagaccgtgactcaaaaatgaaccag
actcactttcaggacagcagagggcctgcaatcctgtaagtccctgtttc
catgctgagcggtgctcacaccacctcctctgaggtagctgggggggagg
gtgcaggctcgaggaccttggctctgtcaggggcacgtgtgctttgggtt
ctttctagggagagaattgttccctttctctctagatccctgcatggtgc
ctagtgtggaggtgggcatgcagacagactgatggattgacagacagcca
aactgaccgcataactgccgaagttctgagatgatctgttgtgctctgtc
ttacaggttaatggagacagcgaaggagatgacccgagaatccttgccta
tcaaatgcctggaggcagtcatcctgggcatgtatcctctaagctttgcg
ttgtccctttgtgaccctgttctggagttagttgtgtctttgatgtcctt
tggagaaaaatgtcagatcctttcttaatttgacctggctggagttgaac
acacccaaggttttggctctttgatcagcttcatctaaccagttatctgt
ggtgctgccagacagatgtcaggctagtgactgtagattcagcatcacgg
gagatttctaattcagagggactttggagatgcctgtgtgacttttcttg
attatatga
gaattcagtgggatcgctcagttcctctgggccttctggtcccagaccat
ggcactgttcagaactcagcctgaggcacaacacatccggggcttccagc
agtttactatccagcctgcctgcactggcctgtgaaaacttagggtccat
tgctgaagcctctttggttggctgcagttccccaggtaaattcacaagaa
ggtcaggccttccctcctcagccccactgatagcctctgcagccgcctct
ttaaatgagataactgggacggaatcatctgagccccggctcacggagtc
ctgagcttcactctctctcttgctctcaccaggatcaagactctgagaag
ggctgtctccatcttcaagggtaaagagggctttcaaaggctctggtttc
agactgtgtaatttctcaccaaaatccagtcccaggagctcacttgtgct
gtctttactgtctattctgaagaattccatagggctgttttttgacctac
tgagggattcagatgttggaggagaagaaaccgcctctagatcctcacct
ccagagaagaccctgaggtgggtgctagggctcacactgccagtggcgag
ggatgctggggaactaaccgcctgggtgtcagccttgtccccttcaggct
gcataacagactcctcgctcagagacaccaggtccatcttttcttgccca
tactcgttgcacagcgtcaggtagcccgctgtgcactcatcctctgaact
ggagcccgaatccagccacttggggagagctgggctggccgtcgtcttcc
tggttgctgtcgtctttgagaactcggggtgagactggtcttcagaggca
gagccttcagcatgctccccgtgtcgctccctctggactcgaagctgctg
ccgccctggggactggcacttggctgctgcaagcacactcgaggaggcat
ggacggtcccccttccttaattgtccaagctttcctgagagctctgttca
gaaatttactgaatatacgaccagaagttttccactgtgaacaacagtga
caagaaattagatgtttcccttggtagttacctggagccactaagtatgg
agcaactatgattactaggccacaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_192789801_192790712
seq2: B6Ng01-096J17.b_45_953 (reverse)

seq1  TCATATTAATGCAAGAAAAGTCACACAGGCACTCTCCAAAGTCCCTCTGA  50
      ||||| |||| |||||||||||||||||||| ||||||||||||||||||
seq2  TCATA-TAAT-CAAGAAAAGTCACACAGGCA-TCTCCAAAGTCCCTCTGA  47

seq1  ATTTGAATTCTCCCGTGACTGCTGAATCTACAGTCACTAGCCTGACATCT  100
      ||| ||| |||||||||| |||||||||||||||||||||||||||||||
seq2  ATTAGAAATCTCCCGTGA-TGCTGAATCTACAGTCACTAGCCTGACATCT  96

seq1  GTCTGGCAGCACCACAGATAACTGGTTAGATGAAGCTGATCCAAAGAGCC  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCTGGCAGCACCACAGATAACTGGTTAGATGAAGCTGAT-CAAAGAGCC  145

seq1  -AAACCTTGGGTGTGTTCAACTCCAGCCAGGTCAAATTAAGAAAGGATCT  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTGGGTGTGTTCAACTCCAGCCAGGTCAAATTAAGAAAGGATCT  195

seq1  GACATTTTTCTCC-AAGGACATCAAAGACACAACTAACTCCAGAACAGGG  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GACATTTTTCTCCAAAGGACATCAAAGACACAACTAACTCCAGAACAGGG  245

seq1  TCACAAAGGGACAACGCAAAGCTTAGAGGATACATGCCCAGGATGACTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGGGACAACGCAAAGCTTAGAGGATACATGCCCAGGATGACTGC  295

seq1  CTCCAGGCATTTGATAGGCAAGGATTCTCGGGTCATCTCCTTCGCTGTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCATTTGATAGGCAAGGATTCTCGGGTCATCTCCTTCGCTGTCT  345

seq1  CCATTAACCTGTAAGACAGAGCACAACAGATCATCTCAGAACTTCGGCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAACCTGTAAGACAGAGCACAACAGATCATCTCAGAACTTCGGCAG  395

seq1  TTATGCGGTCAGTTTGGCTGTCTGTCAATCCATCAGTCTGTCTGCATGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCGGTCAGTTTGGCTGTCTGTCAATCCATCAGTCTGTCTGCATGCC  445

seq1  CACCTCCACACTAGGCACCATGCAGGGATCTAGAGAGAAAGGGAACAATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCACACTAGGCACCATGCAGGGATCTAGAGAGAAAGGGAACAATT  495

seq1  CTCTCCCTAGAAAGAACCCAAAGCACACGTGCCCCTGACAGAGCCAAGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTAGAAAGAACCCAAAGCACACGTGCCCCTGACAGAGCCAAGGT  545

seq1  CCTCGAGCCTGCACCCTCCCCCCCAGCTACCTCAGAGGAGGTGGTGTGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAGCCTGCACCCTCCCCCCCAGCTACCTCAGAGGAGGTGGTGTGAG  595

seq1  CACCGCTCAGCATGGAAACAGGGACTTACAGGATTGCAGGCCCTCTGCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCTCAGCATGGAAACAGGGACTTACAGGATTGCAGGCCCTCTGCTG  645

seq1  TCCTGAAAGTGAGTCTGGTTCATTTTTGAGTCACGGTCTCTCTATTTAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAAGTGAGTCTGGTTCATTTTTGAGTCACGGTCTCTCTATTTAGC  695

seq1  CCCTGGCTGTTCTGGAACTTTTAATGTAAACCAGGCTGGCCTCAAACTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTTCTGGAACTTTTAATGTAAACCAGGCTGGCCTCAAACTCA  745

seq1  GAGATCTACCTGCCTCTCAAGTGCTGGGATTAAAGCTGTATGTCACCACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTACCTGCCTCTCAAGTGCTGGGATTAAAGCTGTATGTCACCACA  795

seq1  CCTGGCCTGAGAGTCAGTCTTGACCACTAAATTTAGCTGCCAAAAGCGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTGAGAGTCAGTCTTGACCACTAAATTTAGCTGCCAAAAGCGAC  845

seq1  TAGTCCTCAGTCCCGTCTACACAGGCCCTGACGTACCTCCACCTCCACCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTCAGTCCCGTCTACACAGGCCCTGACGTACCTCCACCTCCACCC  895

seq1  TCAGACTAGAATTC  912
      ||||||||||||||
seq2  TCAGACTAGAATTC  909

seq1: chr1_192623430_192624556
seq2: B6Ng01-096J17.g_68_1196

seq1  GAATTCAGTGGGATCGCTCAGTTCCTCTGGGCCTTCTGGTCCCAGACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGGATCGCTCAGTTCCTCTGGGCCTTCTGGTCCCAGACCAT  50

seq1  GGCACTGTTCAGAACTCAGCCTGAGGCACAACACATCCGGGGCTTCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTTCAGAACTCAGCCTGAGGCACAACACATCCGGGGCTTCCAGC  100

seq1  AGTTTACTATCCAGCCTGCCTGCACTGGCCTGTGAAAACTTAGGGTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTATCCAGCCTGCCTGCACTGGCCTGTGAAAACTTAGGGTCCAT  150

seq1  TGCTGAAGCCTCTTTGGTTGGCTGCAGTTCCCCAGGTAAATTCACAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGCCTCTTTGGTTGGCTGCAGTTCCCCAGGTAAATTCACAAGAA  200

seq1  GGTCAGGCCTTCCCTCCTCAGCCCCACTGATAGCCTCTGCAGCCGCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGCCTTCCCTCCTCAGCCCCACTGATAGCCTCTGCAGCCGCCTCT  250

seq1  TTAAATGAGATAACTGGGACGGAATCATCTGAGCCCCGGCTCACGGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAGATAACTGGGACGGAATCATCTGAGCCCCGGCTCACGGAGTC  300

seq1  CTGAGCTTCACTCTCTCTCTTGCTCTCACCAGGATCAAGACTCTGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTCACTCTCTCTCTTGCTCTCACCAGGATCAAGACTCTGAGAAG  350

seq1  GGCTGTCTCCATCTTCAAGGGTAAAGAGGGCTTTCAAAGGCTCTGGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTCCATCTTCAAGGGTAAAGAGGGCTTTCAAAGGCTCTGGTTTC  400

seq1  AGACTGTGTAATTTCTCACCAAAATCCAGTCCCAGGAGCTCACTTGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGTAATTTCTCACCAAAATCCAGTCCCAGGAGCTCACTTGTGCT  450

seq1  GTCTTTACTGTCTATTCTGAAGAATTCCATAGGGCTGTTTTTTGACCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTACTGTCTATTCTGAAGAATTCCATAGGGCTGTTTTTTGACCTAC  500

seq1  TGAGGGATTCAGATGTTGGAGGAGAAGAAACCGCCTCTAGATCCTCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGATTCAGATGTTGGAGGAGAAGAAACCGCCTCTAGATCCTCACCT  550

seq1  CCAGAGAAGACCCTGAGGTGGGTGCTAGGGCTCACACTGCCAGTGGCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAGACCCTGAGGTGGGTGCTAGGGCTCACACTGCCAGTGGCGAG  600

seq1  GGATGCTGGGGAACTAACCGCCTGGGTGTCAGCCTTGTCCCCTTCAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGGGGAACTAACCGCCTGGGTGTCAGCCTTGTCCCCTTCAGGCT  650

seq1  GCATAACAGACTCCTCGCTCAGAGACACCAGGTCCATCTTTTCTTGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACAGACTCCTCGCTCAGAGACACCAGGTCCATCTTTTCTTGCCCA  700

seq1  TACTCGTTGCACAGCGTCAGGTAGCCCGCTGTGCACTCATCCTCTGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCGTTGCACAGCGTCAGGTAGCCCGCTGTGCACTCATCCTCTGAACT  750

seq1  GGAGCCCGAATCCAGCCACTT-GGGAGAGCTGGGCTGGCCGTCGTCTTCC  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAGCCCGAATCCAGCCACTTGGGGAGAGCTGGGCTGGCCGTCGTCTTCC  800

seq1  TGGTTGCTGTCGTC-TTGAGAACTCGGGGTGAGACTGGTCTTCAGAGGCA  848
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGTCGTCTTTGAGAACTCGGGGTGAGACTGGTCTTCAGAGGCA  850

seq1  GAGCCTTCAGCATGCTCCCCGTGTCGCTCCCTCTGGACTCGAAGCTGCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTCAGCATGCTCCCCGTGTCGCTCCCTCTGGACTCGAAGCTGCTG  900

seq1  CCGCCCTGGGGACTGGCACTTGGCTGCTGCAGGCACACTCGAGGAGGCAT  948
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCGCCCTGGGGACTGGCACTTGGCTGCTGCAAGCACACTCGAGGAGGCAT  950

seq1  GGACGGTCTCCCTTCCTTAA-TGTCCAAGCTTTCCTGAGAGCTTCTGTTC  997
      |||||||| ||||||||||| ||||||||||||||||||||| |||||||
seq2  GGACGGTCCCCCTTCCTTAATTGTCCAAGCTTTCCTGAGAGC-TCTGTTC  999

seq1  AGAAATTTACTG-ATATACGACCAG-AGTTTTCCACCTGTGAACAACAGT  1045
      |||||||||||| |||||||||||| ||||||||| ||||||||||||||
seq2  AGAAATTTACTGAATATACGACCAGAAGTTTTCCA-CTGTGAACAACAGT  1048

seq1  GACAAGAAATTAAGATGTCTCCCTTGGTAGTTACCT-GAGCCACTAAAGG  1094
      ||||||||||| |||||| ||||||||||||||||| ||||||||||   
seq2  GACAAGAAATT-AGATGTTTCCCTTGGTAGTTACCTGGAGCCACTAA---  1094

seq1  AAATGAAGC-ACTATGATAACTA-GCCACAAAATA  1127
        ||| ||| |||||||| |||| |||||||||||
seq2  GTATGGAGCAACTATGATTACTAGGCCACAAAATA  1129