BAC Information

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BAC

Clone NameB6Ng01-096L11
Chromosome1 (Build37)
Map Location 140,955,350 - 141,121,205
singlet/doubletdoublet
Overlap geneDennd1b, Crb1
Upstream genePtprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623
Downstream geneZbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096L11.bB6Ng01-096L11.g
ACCDH907286DH907287
length1,1511,192
definitionDH907286|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L11, 5' end.DH907287|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,955,350 - 140,956,511)(141,120,008 - 141,121,205)
sequence
gaattcttagaagtaattattgatcagtggaatattgaagattttatgaa
aagttaacatataagtgatttttaaaaagtactttaaactgattcaatat
tctctgcctttctacacacagttcaagacattgcacaggacatttctaga
atagattagcaggtcagaatttagaatttcctatataatgaatgtcactc
aaataatatagcaacatgggttttcctcagtacacaggaatgtttttgtg
taagcttcccctttggagtaaaatactcatttttctttcataagaaccaa
gagctatttattgccagtgagcaagttctgaaagatgacccctcactaat
tccggtgagtgaacagggcgctgacttctatcatctctcttctgagatca
ctatgcctttatgattcactatgggtctttggaaaatggaaacggactat
taacagtaatcaattagaatatgttttctgtttattctttctttcaccta
aatttctgaggcacataatatgaaaaacacagccaaataaaggtgtttaa
tggacctaatcttgcattttctcttttcagtagtatgctgaagttattca
ctgcatgaaattcctgtcacaattatttcttgtcacaagataatcttgtg
acttatctcatactgttcttccatcctggaaaattatgcactatgactct
gtgagacagcctttgactagttcagctctgttcaaaatactgttgaacat
ttctcttcctatctttagatataagaatattaaattattcatatataatt
aaggcattaaaatcatttagcataatatgaacagaaaatagagcgagcgg
ttggatgattgcactttgatttgcatagataatatgtttctttggggggt
tagtggagtctagaggctcagtatccttttcatgtaaataattgatgata
ttgcttttgtttatctggaagtgatatttatttattggtgtttccataag
ttcatagtttggatagcaaatacattttaaaatttcagttttgaaagata
tcttcatgtcttttctgaagagcaactgtaccaatgtatttactatagtt
catcaacgaccttaggagctattttaaagacctcttcaaatagtctgctt
t
gaattcttcagcaacgttctgaattgatttgcagcaacgccaactcccac
cctagaaaccgtcaaacagaaactgagtaatgaggcccggggtcttgtgg
agaatacttgtacactgactgggagagctacatagacttggcaggctcat
aagcaccaaccacaaaccaattcaacactattagggcgcttgcatcttaa
aaatcagtgaaggttgcatcatgtgttatctacaatagcagaatgatgta
gttggatgagaacagaaatttgtactcaactaaaatttgagggaaagtat
agcttgctaggccaaatagccgacccaaatctcctgacccttagggaaaa
gggaaggttgggaaagatacatctgggaatttcggatcattaacacattg
gatcaggttatagtgaagaaatgtttcagaacgaggactctcctttagaa
tgtatttttaggtacactgatttattatgctggtttctttgaaatcgaaa
cccaccagctttgtccatttaacaccccaaaggcacctttattcagagaa
aaaccagactgagctgtgatgcttcgtatgcacagaggaggtttgctgag
caaggcttgagggctgcactgttccacaatcaatcattttcaggcaggat
ctatggtagaaccagggcctggggccaggaaagtatagagtcactgggaa
agtttatttgaatgttctttctttcttaaatcagtaagtaaaataatgct
gttagaaagatattccattgtaaagtgtacgagagatcctgttagaagat
taagttaatgctcattcagccactattgaaatacatatccctaaaatatt
gacattataaatatcgcattatgagcttttcatatggctcagtccactgc
atatgtttctgatatctgctagaatgctgtttctcctgaattttgagtta
taatgaaaattattgtagtaaagagtttcaaaggattttagcagctatca
aatccaactcatttttattataaaagaagagctaaggaaaggggagtgcc
tagattaagtataaaaatatcaaatagtaagcctgaggggctctgcacac
tgggtaaaacagttctttctttcatgggacagagccttgttccatgaact
atatgatggctctataactacggtccaggcagcattggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_140955350_140956511
seq2: B6Ng01-096L11.b_47_1197

seq1  GAATTCTTAGAAGTAATTATTGATCAGTGGAATATTGAAGATTTTATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAAGTAATTATTGATCAGTGGAATATTGAAGATTTTATGAA  50

seq1  AAGTTAACATATAAGTGATTTTTAAAAAGTACTTTAAACTGATTCAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAACATATAAGTGATTTTTAAAAAGTACTTTAAACTGATTCAATAT  100

seq1  TCTCTGCCTTTCTACACACAGTTCAAGACATTGCACAGGACATTTCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTTTCTACACACAGTTCAAGACATTGCACAGGACATTTCTAGA  150

seq1  ATAGATTAGCAGGTCAGAATTTAGAATTTCCTATATAATGAATGTCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTAGCAGGTCAGAATTTAGAATTTCCTATATAATGAATGTCACTC  200

seq1  AAATAATATAGCAACATGGGTTTTCCTCAGTACACAGGAATGTTTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATAGCAACATGGGTTTTCCTCAGTACACAGGAATGTTTTTGTG  250

seq1  TAAGCTTCCCCTTTGGAGTAAAATACTCATTTTTCTTTCATAAGAACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCCCCTTTGGAGTAAAATACTCATTTTTCTTTCATAAGAACCAA  300

seq1  GAGCTATTTATTGCCAGTGAGCAAGTTCTGAAAGATGACCCCTCACTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATTTATTGCCAGTGAGCAAGTTCTGAAAGATGACCCCTCACTAAT  350

seq1  TCCGGTGAGTGAACAGGGCGCTGACTTCTATCATCTCTCTTCTGAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTGAGTGAACAGGGCGCTGACTTCTATCATCTCTCTTCTGAGATCA  400

seq1  CTATGCCTTTATGATTCACTATGGGTCTTTGGAAAATGGAAACGGACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCTTTATGATTCACTATGGGTCTTTGGAAAATGGAAACGGACTAT  450

seq1  TAACAGTAATCAATTAGAATATGTTTTCTGTTTATTCTTTCTTTCACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTAATCAATTAGAATATGTTTTCTGTTTATTCTTTCTTTCACCTA  500

seq1  AATTTCTGAGGCACATAATATGAAAAACACAGCCAAATAAAGGTGTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGAGGCACATAATATGAAAAACACAGCCAAATAAAGGTGTTTAA  550

seq1  TGGACCTAATCTTGCATTTTCTCTTTTCAGTAGTATGCTGAAGTTATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTAATCTTGCATTTTCTCTTTTCAGTAGTATGCTGAAGTTATTCA  600

seq1  CTGCATGAAATTCCTGTCACAATTATTTCTTGTCACAAGATAATCTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGAAATTCCTGTCACAATTATTTCTTGTCACAAGATAATCTTGTG  650

seq1  ACTTATCTCATACTGTTCTTCCATCCTGGAAAATTATGCACTATGACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCTCATACTGTTCTTCCATCCTGGAAAATTATGCACTATGACTCT  700

seq1  GTGAGACAGCCTTTGACTAGTTCAGCTCTGTTCAAAATACTGTTGAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAGCCTTTGACTAGTTCAGCTCTGTTCAAAATACTGTTGAACAT  750

seq1  TTCTCTTCCTATCTTTAGATATAAGAATATTAAATTATTCATATATAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCTATCTTTAGATATAAGAATATTAAATTATTCATATATAATT  800

seq1  AAGGCATTAAAATCATTTAGCATAATATGAACAGAAAATAGAGCGAGCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTAAAATCATTTAGCATAATATGAACAGAAAATAGAGCGAGCGG  850

seq1  TTGGATGATTGCACTTTGATTTGCATAGATAATATGTTTCTTTGGGGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGATTGCACTTTGATTTGCATAGATAATATGTTTCTTTGGGGGGT  900

seq1  TAGTGGAGTCTAGAGGCTCAGTATCCTTTTCATGTAAATAATTGATGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGTCTAGAGGCTCAGTATCCTTTTCATGTAAATAATTGATGATA  950

seq1  TTGC-TTTGTTTATTCTGGAAGTGAATATTTATTTATTGGTGTTTCCATA  999
      |||| |||||||| |||||||||| |||||||||||||||||||||||||
seq2  TTGCTTTTGTTTA-TCTGGAAGTG-ATATTTATTTATTGGTGTTTCCATA  998

seq1  AGTTCATAGTTTTGGATAGCAAATACATTTTAAAATTTCAGTTATTGAAA  1049
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  AGTTCATAG-TTTGGATAGCAAATACATTTTAAAATTTCAGTT-TTGAAA  1046

seq1  GATTATCTTCATTGTTCTTTTCTGAAGAGCATACTTGTTACAAAATGTAT  1099
      || |||||||||   |||||||||||||||| |||   |||  |||||||
seq2  GA-TATCTTCAT--GTCTTTTCTGAAGAGCA-ACT--GTAC-CAATGTAT  1089

seq1  TTACTATAGTTCATCATAGAAACCTTAGGAGCTATTTTATAGA-CTCTTC  1148
      ||||||||||||||||  |  |||||||||||||||||| ||| ||||||
seq2  TTACTATAGTTCATCAACG--ACCTTAGGAGCTATTTTAAAGACCTCTTC  1137

seq1  AAATAGCCTGCTTT  1162
      |||||| |||||||
seq2  AAATAGTCTGCTTT  1151

seq1: chr1_141120008_141121205
seq2: B6Ng01-096L11.g_67_1258 (reverse)

seq1  AAAACCACTAGCTGCCCTGGAGCTGTAGTTAT-GAGCCATCATATATAGG  49
      ||||||| | |||| |||||| | |||||||| ||||||||  |||||| 
seq2  AAAACCAAT-GCTG-CCTGGA-CCGTAGTTATAGAGCCATC--ATATAGT  45

seq1  TCATGGGACAGAGCTCTTGTCCCATGAAAGAAAAGGAACTGTTTTTAACC  99
      |||||| |||  |||| ||||||||||||||||  |||||| ||||| ||
seq2  TCATGGAACAAGGCTC-TGTCCCATGAAAGAAA--GAACTG-TTTTACCC  91

seq1  AGTGTGC-CAGCCCCTCAGCCTTACTATTTGATATTTTATAACTTAATCT  148
      |||||||  |||||||||| ||||||||||||||||||   |||||||||
seq2  AGTGTGCAGAGCCCCTCAGGCTTACTATTTGATATTTTTATACTTAATCT  141

seq1  AGGCACT-CCCTCTCCTTAGCTTCTTCTTTTAT-ATAAAAATGAGTTGGA  196
      ||||||| |||| |||||||| ||||||||||| ||||||||||||||||
seq2  AGGCACTCCCCTTTCCTTAGC-TCTTCTTTTATAATAAAAATGAGTTGGA  190

seq1  TTTGATAGCTGCTAAAATCCTTTGAAACTCTTTACTACAATATTTTTCAT  246
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTGATAGCTGCTAAAATCCTTTGAAACTCTTTACTACAATAATTTTCAT  240

seq1  TAATAACTCAAAATTCAGGAGAAACAGCATTCTAGCAGATATCAGAAACA  296
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ATAACTCAAAATTCAGGAGAAACAGCATTCTAGCAGATATCAGAAACA  289

seq1  TATGCAGTGGACTGAGCCATATGAAAAGCTCAT-ATGCGATATTTATAAT  345
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATGCAGTGGACTGAGCCATATGAAAAGCTCATAATGCGATATTTATAAT  339

seq1  GTCAATATTTTAGGGATATGTATTTCAATAGTGGCTGAATGAGCATTAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATATTTTAGGGATATGTATTTCAATAGTGGCTGAATGAGCATTAAC  389

seq1  TTAATCTTCTAACAGGATCTCTCGTACACTTTACAATGGAATATCTTTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTCTAACAGGATCTCTCGTACACTTTACAATGGAATATCTTTCT  439

seq1  AACAGCATTATTTTACTTACTGATTTAAGAAAGAAAGAACATTCAAATAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATTATTTTACTTACTGATTTAAGAAAGAAAGAACATTCAAATAA  489

seq1  ACTTTCCCAGTGACTCTATACTTTCCTGGCCCCAGGCCCTGGTTCTACCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCAGTGACTCTATACTTTCCTGGCCCCAGGCCCTGGTTCTACCA  539

seq1  TAGATCCTGCCTGAAAATGATTGATTGTGGAACAGTGCAGCCCTCAAGCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCTGCCTGAAAATGATTGATTGTGGAACAGTGCAGCCCTCAAGCC  589

seq1  TTGCTCAGCAAACCTCCTCTGTGCATACGAAGCATCACAGCTCAGTCTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGCAAACCTCCTCTGTGCATACGAAGCATCACAGCTCAGTCTGG  639

seq1  TTTTTCTCTGAATAAAGGTGCCTTTGGGGTGTTAAATGGACAAAGCTGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTGAATAAAGGTGCCTTTGGGGTGTTAAATGGACAAAGCTGGT  689

seq1  GGGTTTCGATTTCAAAGAAACCAGCATAATAAATCAGTGTACCTAAAAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCGATTTCAAAGAAACCAGCATAATAAATCAGTGTACCTAAAAAT  739

seq1  ACATTCTAAAGGAGAGTCCTCGTTCTGAAACATTTCTTCACTATAACCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTAAAGGAGAGTCCTCGTTCTGAAACATTTCTTCACTATAACCTG  789

seq1  ATCCAATGTGTTAATGATCCGAAATTCCCAGATGTATCTTTCCCAACCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGTGTTAATGATCCGAAATTCCCAGATGTATCTTTCCCAACCTT  839

seq1  CCCTTTTCCCTAAGGGTCAGGAGATTTGGGTCGGCTATTTGGCCTAGCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCCCTAAGGGTCAGGAGATTTGGGTCGGCTATTTGGCCTAGCAA  889

seq1  GCTATACTTTCCCTCAAATTTTAGTTGAGTACAAATTTCTGTTCTCATCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACTTTCCCTCAAATTTTAGTTGAGTACAAATTTCTGTTCTCATCC  939

seq1  AACTACATCATTCTGCTATTGTAGATAACACATGATGCAACCTTCACTGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATCATTCTGCTATTGTAGATAACACATGATGCAACCTTCACTGA  989

seq1  TTTTTAAGATGCAAGCGCCCTAATAGTGTTGAATTGGTTTGTGGTTGGTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGATGCAAGCGCCCTAATAGTGTTGAATTGGTTTGTGGTTGGTG  1039

seq1  CTTATGAGCCTGCCAAGTCTATGTAGCTCTCCCAGTCAGTGTACAAGTAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAGCCTGCCAAGTCTATGTAGCTCTCCCAGTCAGTGTACAAGTAT  1089

seq1  TCTCCACAAGACCCCGGGCCTCATTACTCAGTTTCTGTTTGACGGTTTCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAAGACCCCGGGCCTCATTACTCAGTTTCTGTTTGACGGTTTCT  1139

seq1  AGGGTGGGAGTTGGCGTTGCTGCAAATCAATTCAGAACGTTGCTGAAGAA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGAGTTGGCGTTGCTGCAAATCAATTCAGAACGTTGCTGAAGAA  1189

seq1  TTC  1198
      |||
seq2  TTC  1192