BAC Information

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BAC

Clone NameB6Ng01-096P10
Chromosome1 (Build37)
Map Location 42,569,687 - 42,712,847
singlet/doubletdoublet
Overlap gene2610017I09Rik
Upstream geneLOC383634, LOC666582
Downstream genePou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P10.bB6Ng01-096P10.g
ACCDH907462DH907463
length1,1971,177
definitionDH907462|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P10, 5' end.DH907463|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,569,687 - 42,570,884)(42,711,671 - 42,712,847)
sequence
gaattcatcaaagaaagaataaaaaatattaattcactcaccaggtgaat
tcactatacaggtgaatagagacatagataatccctccaaaattcaaagt
tttgtatgttaatgtgccaaagcatcagaactggaagcctcagattttgt
atcatgtagtcaactagattcagaagtaaaaatttgtgcttagtcacaag
gtgcaagtaagcaagcaagccagcctatatgtgcagcagagctccttagg
cactagacacacctctgccatggtgcagtgactcacacactgaatgcatg
tttagaaggtttgcaagacacaggtcataaccccaaagaagatagaggca
tatataggagaccagcctagacaacagaggagacacaaagtttgtagaaa
ctcagtataattaaattcagtatagagatgtcttagatctcaaacagccc
acaagacatataaagacttggaggccagcctgtgacatctttgagagatg
ttgggacatttaagatatgggacctaggagagaaaaattagatgactgag
atgtgcctttagaagggaatggtgggggctggagagatggctcagtggtt
aagagcactgactgctctttcagaggtcctgagttcaattcccagcaacc
acacagtgactcactaccatctgtaatgggatatgatgccctcttctgaa
gacatctgcatctgaaaacagctacagtatattcacatataatcaatcaa
taaataaatctttttttaaaaaaagagatggtagctgccaggtttcttgt
tcttctgccctgattccatcatgagcttcctacataatgttctatcttac
cacagactctaaggaaacagagccaggctaccatgggtcatggacagaaa
accactgaacatgtgagctagactcaactttccttccttttaagttgctt
ttctctactattttgtgccaaagtcacaaagctaactagcactaaaatga
tctctcaaggaacagaatctttcagtgccccaaggtatctcatattgagg
aaatttataggataggagaagaggccagaacaaaccaattcacccctcca
ttagaattcattttctgtccatggacgattactgatcaagggctattttc
tcataaggccaaataccatcttcatggaaaacaagcttctcttgaag
gaattcttccttcccctccataaggcacacagtgcaccgacaaccaaaac
ctcactatgtgcacacccaggagaggacaagcctgctaattactgaggag
acctaattaaacctcagataggcactgtggagcttcactttttaccttaa
acatatgaataggacaaacgttcccaatttcagggcaagttgctaaatga
aaaacaaaacaaccccccggccccccaacaatgttactctctggaaatat
cactcgcatgatgtggtaatttagaaaaatatatctattagagatagtta
gagatatatgtattttttttttttttttttttttggttggaaaagcttcg
ttgaggcacaaagctgaaaattgtagacaggttaagtaaattaaatcact
cactgtcttttttcccttcttcttcaatggctttaaaagttaaaggtaat
ttgcaaggaaaatgctcagtttgaattggtttgtaatatctgttaatgat
cttggagagaaaaaaaaaattcacgcactctcagttctctccccaaggga
cctccagtgtgcttttgggaaaaatttccaaagtctgaaatgtcattagc
tagtgattttcttgaagtaaaaagccaggaaaaaaattatataaggtata
caagtgcacaggacaatcactctgatgaataatgtctgtatttttcataa
tgtttcatatctaaaaatgcagcaattgaaagccaagcttctaaactcta
gaactgcatgagttagctcggtgtagtcatcccttctgtttatttcacac
gtatattgcattctttcgtatatttatagattgttgttgtaaaacagtag
tgtttggaaacaatttttgattatgtttcttgcatttaccttttagaaac
acaggtgtagcctaatacagaccttacaggtacctgtctcccaggtttaa
aacaatacttgctttcagagcaattcagcaagtgcctgaagtggaggttg
cgacacctaaggcatactggagagcctgtttgggtatttatgtaccgtac
tgtgcaatccttaatattaaggggaactattccgttaacccctgtctgtg
gtggccttttgcgatatgcagaagctttggaagtcagtctactttgttaa
ctggcgaattcccacctggctgctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42569687_42570884
seq2: B6Ng01-096P10.b_44_1240

seq1  GAATTCATCAAAGAAAGAATAAAAAATATTAATTCACTCACCAGGTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAAGAAAGAATAAAAAATATTAATTCACTCACCAGGTGAAT  50

seq1  TCACTATACAGGTGAATAGAGACATAGATAATCCCTCCAAAATTCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATACAGGTGAATAGAGACATAGATAATCCCTCCAAAATTCAAAGT  100

seq1  TTTGTATGTTAATGTGCCAAAGCATCAGAACTGGAAGCCTCAGATTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGTTAATGTGCCAAAGCATCAGAACTGGAAGCCTCAGATTTTGT  150

seq1  ATCATGTAGTCAACTAGATTCAGAAGTAAAAATTTGTGCTTAGTCACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTAGTCAACTAGATTCAGAAGTAAAAATTTGTGCTTAGTCACAAG  200

seq1  GTGCAAGTAAGCAAGCAAGCCAGCCTATATGTGCAGCAGAGCTCCTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGTAAGCAAGCAAGCCAGCCTATATGTGCAGCAGAGCTCCTTAGG  250

seq1  CACTAGACACACCTCTGCCATGGTGCAGTGACTCACACACTGAATGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGACACACCTCTGCCATGGTGCAGTGACTCACACACTGAATGCATG  300

seq1  TTTAGAAGGTTTGCAAGACACAGGTCATAACCCCAAAGAAGATAGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGGTTTGCAAGACACAGGTCATAACCCCAAAGAAGATAGAGGCA  350

seq1  TATATAGGAGACCAGCCTAGACAACAGAGGAGACACAAAGTTTGTAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGGAGACCAGCCTAGACAACAGAGGAGACACAAAGTTTGTAGAAA  400

seq1  CTCAGTATAATTAAATTCAGTATAGAGATGTCTTAGATCTCAAACAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATAATTAAATTCAGTATAGAGATGTCTTAGATCTCAAACAGCCC  450

seq1  ACAAGACATATAAAGACTTGGAGGCCAGCCTGTGACATCTTTGAGAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACATATAAAGACTTGGAGGCCAGCCTGTGACATCTTTGAGAGATG  500

seq1  TTGGGACATTTAAGATATGGGACCTAGGAGAGAAAAATTAGATGACTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACATTTAAGATATGGGACCTAGGAGAGAAAAATTAGATGACTGAG  550

seq1  ATGTGCCTTTAGAAGGGAATGGTGGGGGCTGGAGAGATGGCTCAGTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCTTTAGAAGGGAATGGTGGGGGCTGGAGAGATGGCTCAGTGGTT  600

seq1  AAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACC  650

seq1  ACACAGTGACTCACTACCATCTGTAATGGGATATGATGCCCTCTTCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGACTCACTACCATCTGTAATGGGATATGATGCCCTCTTCTGAA  700

seq1  GACATCTGCATCTGAAAACAGCTACAGTATATTCACATATAATCAATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGCATCTGAAAACAGCTACAGTATATTCACATATAATCAATCAA  750

seq1  TAAATAAATCTTTTTTTAAAAAAAGAGATGGTAGCTGCCAGGTTTCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATCTTTTTTTAAAAAAAGAGATGGTAGCTGCCAGGTTTCTTGT  800

seq1  TCTTCTGCCCTGATTCCATCATGAGCTTCCTACATAATGTTCTATCTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCCCTGATTCCATCATGAGCTTCCTACATAATGTTCTATCTTAC  850

seq1  CACAGACTCTAAGGAAACAGAGCCAGGCTACCATGGGTCATGGACAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTCTAAGGAAACAGAGCCAGGCTACCATGGGTCATGGACAGAAA  900

seq1  ACCACTGAACATGTGAGCTAGACTCAACTTTCCTTCCTTTTAAGTTGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAACATGTGAGCTAGACTCAACTTTCCTTCCTTTTAAGTTGCTT  950

seq1  TTCTCTACTATTTTGTGCCAAAGTCACAAAGCTAACTAGCACTAAAATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACTATTTTGTGCCAAAGTCACAAAGCTAACTAGCACTAAAATGA  1000

seq1  TCTCCTCAAGGAACAGAATC-TTCAGTGCCCCAAGGTATCTCCATATTGA  1049
      ||| |||||||||||||||| |||||||||||||||||||| ||||||||
seq2  TCT-CTCAAGGAACAGAATCTTTCAGTGCCCCAAGGTATCT-CATATTGA  1048

seq1  GGAAATTTATAGGATAGGAGAAGAGGCCAGAACAAACCAA-TCACCC--T  1096
      |||||||||||||||||||||||||||||||||||||||| ||||||   
seq2  GGAAATTTATAGGATAGGAGAAGAGGCCAGAACAAACCAATTCACCCCTC  1098

seq1  CATTAGATATCATTTTCTGTTCAT-GACGATTAACTTGATCAA-GGCTAT  1144
      |||||||  ||||||||||| ||| ||||||||   ||||||| ||||||
seq2  CATTAGAATTCATTTTCTGTCCATGGACGATTA--CTGATCAAGGGCTAT  1146

seq1  TTTCTCCATAGGC--AATACCCATTCTTTCATGAAAACAAAAGCTTCTCT  1192
      ||||||   ||||  |||| ||||   |||||| ||| | ||||||||||
seq2  TTTCTCATAAGGCCAAATA-CCAT--CTTCATGGAAA-ACAAGCTTCTCT  1192

seq1  CTGAAG  1198
       |||||
seq2  -TGAAG  1197

seq1: chr1_42711671_42712847
seq2: B6Ng01-096P10.g_69_1245 (reverse)

seq1  TCCAGCAGCCAGGGTGGAA-TCTGCAGTTACCCGGAGGTAGCACTGCATC  49
      |||||||||||||  |||| ||  |||||| |   | |||| ||||  | 
seq2  TCCAGCAGCCAGGTGGGAATTCGCCAGTTAAC--AAAGTAG-ACTGACTT  47

seq1  ACAAAGCCTTCTGCGCATACCGGCAAAAGCCCACCACCAGCCGGGGGTCA  99
       ||||| |||||  ||||| | ||||||| |||||||   | |||| | |
seq2  CCAAAG-CTTCT--GCATATC-GCAAAAGGCCACCACAGACAGGGGTTAA  93

seq1  CGGAATAGTTCCCCCTTAATAT--AGTGTTTCACAGTACGGTTACCT-AA  146
      |||||||||| |||||||||||  ||  || |||||||||| ||| | ||
seq2  CGGAATAGTT-CCCCTTAATATTAAGGATTGCACAGTACGG-TACATAAA  141

seq1  TACCC-AACA-GCTCTCCAGTCTGCC-TAGTGTTCGC-ACCTCCACTTCA  192
      ||||| |||| |||||||||| |||| |||   |||| ||||||||||||
seq2  TACCCAAACAGGCTCTCCAGTATGCCTTAGGTGTCGCAACCTCCACTTCA  191

seq1  GGCACCTGGCTGAA-TGCTCTG-AAGCAAGTTATTGTTTTAACCTGGGGA  240
      |||| || |||||| ||||||| ||||||| ||||||||||| |  ||||
seq2  GGCA-CTTGCTGAATTGCTCTGAAAGCAAG-TATTGTTTTAAACCTGGGA  239

seq1  GACA-GTACCTGT-AGGTCTGTATTTAGGCTACACCTTGTGTTTCTAAAA  288
      |||| |||||||| ||||||||| |||||||||||| |||||||||||||
seq2  GACAGGTACCTGTAAGGTCTGTA-TTAGGCTACACC-TGTGTTTCTAAAA  287

seq1  GGTAAATGCAAGGAACATAATC-AAAATTG-TTCCTAACACTACTGTTTT  336
      |||||||||||| ||||||||| ||||||| |||| |||||||||| |||
seq2  GGTAAATGCAAGAAACATAATCAAAAATTGTTTCCAAACACTACTG-TTT  336

seq1  TACAACAACAATCTATAAATATACGGAAGAATGCAATATACGTGTGAAAT  386
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACAACAACAATCTATAAATATACGAAAGAATGCAATATACGTGTGAAAT  386

seq1  AAACAGAAGGGATGACTACACCGAGCTAACTCATGCAGTTCTAGAGTTTA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAGGGATGACTACACCGAGCTAACTCATGCAGTTCTAGAGTTTA  436

seq1  GAAGCTTGGCTTTCAATTGCTGCATTTTTAGATATGAAACATTATGAAAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTGGCTTTCAATTGCTGCATTTTTAGATATGAAACATTATGAAAA  486

seq1  ATACAGACATTATTCATCAGAGTGATTGTCCTGTGCACTTGTATACCTTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACATTATTCATCAGAGTGATTGTCCTGTGCACTTGTATACCTTA  536

seq1  TATAATTTTTTTCCTGGCTTTTTACTTCAAGAAAATCACTAGCTAATGAC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTTTTCCTGGCTTTTTACTTCAAGAAAATCACTAGCTAATGAC  586

seq1  ATTTCAGACTTTGGAAATTTTTCCCAAAAGCACACTGGAGGTCCCTTGGG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGACTTTGGAAATTTTTCCCAAAAGCACACTGGAGGTCCCTTGGG  636

seq1  GAGAGAACTGAGAGTGCGTGAATTTTTTTTTTCTCTCCAAGATCATTAAC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACTGAGAGTGCGTGAATTTTTTTTTTCTCTCCAAGATCATTAAC  686

seq1  AGATATTACAAACCAATTCAAACTGAGCATTTTCCTTGCAAATTACCTTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTACAAACCAATTCAAACTGAGCATTTTCCTTGCAAATTACCTTT  736

seq1  AACTTTTAAAGCCATTGAAGAAGAAGGGAAAAAAGACAGTGAGTGATTTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAAAGCCATTGAAGAAGAAGGGAAAAAAGACAGTGAGTGATTTA  786

seq1  ATTTACTTAACCTGTCTACAATTTTCAGCTTTGTGCCTCAACGAAGCTTT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTAACCTGTCTACAATTTTCAGCTTTGTGCCTCAACGAAGCTTT  836

seq1  TCCAACCAAAAAAAAAAAAAAAAAAAAAATACATATATCTCTAACTATCT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCAAAAAAAAAAAAAAAAAAAAAATACATATATCTCTAACTATCT  886

seq1  CTAATAGATATATTTTTCTAAATTACCACATCATGCGAGTGATATTTCCA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGATATATTTTTCTAAATTACCACATCATGCGAGTGATATTTCCA  936

seq1  GAGAGTAACATTGTTGGGGGGCCGGGGGGTTGTTTTGTTTTTCATTTAGC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAACATTGTTGGGGGGCCGGGGGGTTGTTTTGTTTTTCATTTAGC  986

seq1  AACTTGCCCTGAAATTGGGAACGTTTGTCCTATTCATATGTTTAAGGTAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCCCTGAAATTGGGAACGTTTGTCCTATTCATATGTTTAAGGTAA  1036

seq1  AAAGTGAAGCTCCACAGTGCCTATCTGAGGTTTAATTAGGTCTCCTCAGT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAGCTCCACAGTGCCTATCTGAGGTTTAATTAGGTCTCCTCAGT  1086

seq1  AATTAGCAGGCTTGTCCTCTCCTGGGTGTGCACATAGTGAGGTTTTGGTT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCAGGCTTGTCCTCTCCTGGGTGTGCACATAGTGAGGTTTTGGTT  1136

seq1  GTCGGTGCACTGTGTGCCTTATGGAGGGGAAGGAAGAATTC  1177
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTGCACTGTGTGCCTTATGGAGGGGAAGGAAGAATTC  1177